mRNA_E_fasciculatus_S2_contig9717.17720.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9717.17720.1
Unique NamemRNA_E_fasciculatus_S2_contig9717.17720.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: EDR2_C (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTZ3_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 5.810e-46
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 1
Query:   67 QVGLPSIARRFSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 312
            +VGLPSIARRFSGKPIL+YGKESS+VKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC
Sbjct: 1113 EVGLPSIARRFSGKPILLYGKESSMVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 1194          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: PH (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV68_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.650e-12
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   13 PIRNVLVPVRLFVRPMSCQVGLPS--IARRFSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 312
            PIR+ L  + + V P    +G     +   ++G+PIL    +    +G GY E+D++AH F++V RKGL    + +   V   GF+LEG+ D+E PE ILGC
Sbjct:  442 PIRDRLKAIGVVVNPTEQNLGRMEKHLLETYNGQPILTR-PQHRFYRGDGYFEVDIDAHIFNFVARKGLCGVADHFGNMVVDFGFVLEGQEDDELPEQILGC 542          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: PH (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C4M5_SAPPC)

HSP 1 Score: 69.3 bits (168), Expect = 1.420e-11
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   16 IRNVLVPVRLFVRPMSCQVGLPS--IARRFSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 312
            IR+ L  + + V P    +G     +   ++G+PIL    +    +G GY E+D++AH F+YV RKGL    + +   V   GF+LEG+ D+E PE ILGC
Sbjct:  410 IRDRLKAIGIVVNPAEQALGRTERHLLETYNGQPILTR-PQHRFYRGDGYFEVDIDAHLFNYVARKGLCGVTDHFGNMVVDFGFVLEGQEDDELPEQILGC 509          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: PH (domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA90_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.660e-11
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   16 IRNVLVPVRLFVRPMSCQVGLPS--IARRFSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 312
            +R+ L  + + V P    +G     +   ++G+PIL    +    +G GY E+D++AH F++V RKGL    E +   V   GF+LEG+ D+E PE ILGC
Sbjct:  446 VRDRLKAIGVVVNPSEQALGRTERHLLETYNGQPILTR-PQHRFYRGDGYFEIDIDAHLFNFVARKGLCGVTEHFGNMVVDFGFVLEGQEDDELPEQILGC 545          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: Aste57867_21993 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LL25_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.660e-11
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   13 PIRNVLVPVRLFVRPMSCQVGLPS--IARRFSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 312
            P+R+ L  + + V P    +G     +   ++G+PIL    +    +G GY E+D++AH F++V RKGL    + +   V   GF+LEG+ D+E PE ILGC
Sbjct:  499 PMRDRLKAIGVVVNPAEQTLGRMEKHLLETYNGQPILTR-PQHRFYRGDGYYEVDVDAHIFNFVARKGLSGVADHFGNMVVDFGFVLEGQEDDELPEQILGC 599          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: EDR2_C (domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D3G4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.670e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   97 FSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 312
            ++G+PIL    +    +G GY E+D++AH F++V RKGL    + +   +   GF+LEG+ D+E PE ILGC
Sbjct:   40 YNGQPILTR-PQHRFYRGDGYFEVDIDAHLFNFVARKGLSGVADHFGHMIVDFGFVLEGQEDDEVPEQILGC 110          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: PH (domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4Q6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.670e-11
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   13 PIRNVLVPVRLFVRPMSCQVGLPS--IARRFSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 312
            PI + L  + + V P    +G     +   ++G+PIL    +    +G GY E+D++AH F++V RKGL    + +   V   GF+LEG+ D+E PE ILGC
Sbjct:  509 PITDRLKAIGIVVNPEEQNLGRMEKHLLETYNGQPILTR-PQHRFYRGDGYFEVDIDAHTFNFVARKGLSGVADHFGNMVVDFGFVLEGQDDDEVPEQILGC 609          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: PH (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6M4_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-10
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 EGVLPIRNVLVPVRLFVRPMSCQVGLPS--IARRFSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILG 309
            +G   +R+    + + V P   ++G     +   ++G+PIL    +    +G GY E+D++AH F++V RKGL    E ++  V   GF+LEG+ D E PE ILG
Sbjct:  548 QGASGVRDRFKAIGIVVNPQEQKLGRTERHLLETYNGQPILTR-PQHRFYEGEGYFEVDVDAHEFNFVARKGLVGVSEHFRNMVVDFGFVLEGQEDSELPEQILG 651          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: PH (domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZMV0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.400e-10
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   97 FSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGC 312
            ++G+PIL    +    +G GY E+D++AH F++V RKGL    + +   V   GF+LEG+ D+E PE ILGC
Sbjct:  160 YNGQPILTR-PQHRFYRGDGYFEVDIDAHTFNFVARKGLSGVADHFGNMVVDFGFVLEGQDDDEVPEQILGC 230          
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX10_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.690e-10
Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   67 QVGLPSIARRFSGKPILIYGKESSVVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILG 309
            ++G+P    +++GKP LI  K  +  +   Y+E+ +N H ++YV RKG+   L  + + +  +GF +EGR+D E PE +LG
Sbjct:  178 KMGIPGFITQYNGKPTLIT-KSGNFTRHEKYIEMAINVHLWAYVARKGMLTLLPSFAKLLINVGFTIEGRSDMELPEVLLG 257          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9717.17720.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
EDR2_C5.810e-4696.34domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
PH7.650e-1237.25domain-containing protein n=1 Tax=Aphanomyces eute... [more]
PH1.420e-1137.62domain-containing protein n=2 Tax=Saprolegnia TaxI... [more]
PH2.660e-1136.63domain-containing protein n=1 Tax=Achlya hypogyna ... [more]
Aste57867_219933.660e-1136.27protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
EDR2_C3.670e-1141.67domain-containing protein n=1 Tax=Aphanomyces inva... [more]
PH3.670e-1136.27domain-containing protein n=4 Tax=Aphanomyces asta... [more]
PH1.280e-1034.29domain-containing protein n=1 Tax=Globisporangium ... [more]
PH1.400e-1043.06domain-containing protein n=6 Tax=Aphanomyces asta... [more]
Hypothetical1.690e-1035.80protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9717contigE_fasciculatus_S2_contig9717:84..1218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score168.7
Seed ortholog evalue1.4e-39
Seed eggNOG ortholog2880.D7FTZ3
Model size312
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28UHR@1,2R18H@2759
Cds size312
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842616.7968307-CDS-E_fasciculatus_S2_contig9717:83..2901696842616.7968307-CDS-E_fasciculatus_S2_contig9717:83..290Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9717 84..290 +
1696842616.812008-CDS-E_fasciculatus_S2_contig9717:1113..12181696842616.812008-CDS-E_fasciculatus_S2_contig9717:1113..1218Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9717 1114..1218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9717.17720.1prot_E_fasciculatus_S2_contig9717.17720.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9717 84..1218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9717.17720.1

>prot_E_fasciculatus_S2_contig9717.17720.1 ID=prot_E_fasciculatus_S2_contig9717.17720.1|Name=mRNA_E_fasciculatus_S2_contig9717.17720.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
EGVLPIRNVLVPVRLFVRPMSCQVGLPSIARRFSGKPILIYGKESSVVKG
PGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEH
ILGC
back to top

mRNA from alignment at E_fasciculatus_S2_contig9717:84..1218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9717.17720.1 ID=mRNA_E_fasciculatus_S2_contig9717.17720.1|Name=mRNA_E_fasciculatus_S2_contig9717.17720.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1135bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9717:84..1218+ (Ectocarpus fasciculatus EfasUO2)
GAAGGAGTGTTACCTATTCGCAACGTTCTCGTGCCTGTTCGTTTGTTCGT CCGGCCGATGTCATGTCAGGTCGGCCTGCCGAGCATCGCGAGGCGATTCA GCGGGAAGCCAATCCTTATCTACGGCAAAGAATCGAGCGTGGTCAAGGGC CCGGGCTACGTAGAGCTCGACCTCAACGCTCACGCCTTCTCCTACGTCGG CCGCAAGGTAAACCTCAACCTTCGCCTTGACCTTTTCCGAAACAACATTT CGGGTTGTTCAGCGCGCGCCAAGGTTTTTGAACCGGGGGGTTTTCTAACG TGGTTGGCTGTTTTGAAGGAGGCGTGTCTTGGTCTTGCCTCGGCGCAACC GACGGTCGTAGAGAGAGAGAGAGTTGTGTCCGGTCGTCGGCATTGTGGAC CTGTGTTGGCCTATCCCACGTTGACGTGTTTTCCCACTCAAACATGGCTC GCAGCAGTCGCCACCAATCGCATGACCTTGCTTTTCCAACTGCGAAGGGT CATTGTGGCCAAAGCGTATTCCGCCCAATCAAGCAATGCTTGTCCTGTTG GTGCACGTGCCCCCAAAGGCCTTGGACGTTTCGGGGCTATTTCGGTTTCG TTGCAACAACTGCTCCCGCTTTTCGATCTGTTTGACGCTTGAAGATCGAG GATTTCTTCGTGCAATGCAGTCGGGAACCTAGCGTACTCTAATTTTGCTG GATGCCCGATGTGGAATGCGATTTCGTCAAATTTTTGAGCGATTGAACCA CGCTGGTTGTGACCTAGCCTGTTCTTGCCCTTGCGTGTTTTGGCGCGTAT CTCAAAGCCACGCGATTGCTCCGCGTTTTAACTTGGACATCGTACGTCTT CGGGCCTGAACAACATATCTCATCAATGGTGTCGTGACATATTTAGGGTC TGAGCAACCTACGTTACCAATCATGTCGTGGCGCATTTAGGGCCTAAAGT ACTTCTGTTTCCAATCATAACGTGGCGCATTTGAAGGCCTGAGATACGTA TGTTTCCATTCACATCGTGGCGCATTTTAGGGTCTGTACGTGACTCTGGA GAAGTGGAAGAGGGCAGTATTCCGCATCGGATTCCTCCTGGAAGGGAGGA CGGATGAGGAGCAGCCGGAGCACATTTTGGGCTGT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9717:84..1218+

>mRNA_E_fasciculatus_S2_contig9717.17720.1 ID=mRNA_E_fasciculatus_S2_contig9717.17720.1|Name=mRNA_E_fasciculatus_S2_contig9717.17720.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9717:84..1218+ (Ectocarpus fasciculatus EfasUO2)
GAAGGAGTGTTACCTATTCGCAACGTTCTCGTGCCTGTTCGTTTGTTCGT
CCGGCCGATGTCATGTCAGGTCGGCCTGCCGAGCATCGCGAGGCGATTCA
GCGGGAAGCCAATCCTTATCTACGGCAAAGAATCGAGCGTGGTCAAGGGC
CCGGGCTACGTAGAGCTCGACCTCAACGCTCACGCCTTCTCCTACGTCGG
CCGCAAGGGTCTGTACGTGACTCTGGAGAAGTGGAAGAGGGCAGTATTCC
GCATCGGATTCCTCCTGGAAGGGAGGACGGATGAGGAGCAGCCGGAGCAC
ATTTTGGGCTGT
back to top