mRNA_E_fasciculatus_S2_contig9714.17719.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9714.17719.1
Unique NamemRNA_E_fasciculatus_S2_contig9714.17719.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9714.17719.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU20_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 2.580e-151
Identity = 212/249 (85.14%), Postives = 216/249 (86.75%), Query Frame = 1 
Query:    1 ARKEVWGGPGWSVDDVGG-DXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPAAVDDEAAGISLVGRVEVYLCLLDGSSKRRLRVTCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTNDKDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNTNLPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLMDIRKMPTPRARWAIPADVTFPDDTDHNLVGTAMIVRPPTPSTPPHSSRTACDGR 744
            ARKEVWGGPGWSVDDVGG D                         XX DAPA  DDEA GISLVGRVEVYLCLLDGSSKRRLRVTCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTN KDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNT+LPPELHWALMNGGTGLNPPPTLMMHSHRRAKERL+DIR+MPTPRARWAIPADVTFPDDTDHNLVG+AMIVRPPTPSTPPH  RTACDGR
Sbjct:  225 ARKEVWGGPGWSVDDVGGGDGGDGGVSCSGGTKTPRNSPNNGGAAXXADAPAPADDEAGGISLVGRVEVYLCLLDGSSKRRLRVTCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTNGKDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNTDLPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLVDIRQMPTPRARWAIPADVTFPDDTDHNLVGSAMIVRPPTPSTPPHGGRTACDGR 473
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9714.17719.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 434 bits (1115), Expect = 3.190e-138
Identity = 237/250 (94.80%), Postives = 240/250 (96.00%), Query Frame = 1 
Query:    1 ARKEVWGGPGWSVDDVGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DAPAAVDDEAAGISLVGRVEVYLCLLDGSSKRRLRVTCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTNDKDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNTNLPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLMDIRKMPTPRARWAIPADVTFPDDTDHNLVGTAMIVRPPTPSTPPHSSRTACDGR 744
            ARKEVWGGPGWSVDDVG  XXXXXXXXXXXXXXXXXXXXXXXXXXXX  DAPAA DDEA GISLVGRVEVYLCLLDGSSKRRLRV CPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTNDKDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNT+LPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLMDIR+MPTPRARWAIPADVTFPDDTDHNLVG+AMIVRPPTPSTPPH   TACDGR
Sbjct: 1369 ARKEVWGGPGWSVDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADAPAAADDEADGISLVGRVEVYLCLLDGSSKRRLRVNCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTNDKDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNTDLPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLMDIRQMPTPRARWAIPADVTFPDDTDHNLVGSAMIVRPPTPSTPPHGGGTACDGR 1618
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9714.17719.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH6_9STRA)

HSP 1 Score: 164 bits (415), Expect = 7.900e-45
Identity = 83/168 (49.40%), Postives = 107/168 (63.69%), Query Frame = 1 
Query:  157 VDDEAAGISLVGRVEVYLCLLDGSSKRRLRVTCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTNDKDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNTNLPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLMDIRKMPTPR----ARWAIPADVTFPD 648
            VD+      L GR+EVYL L DG+ KRRL +T P +E  PP+CI LGAG+  ANGT++L G+R+GAPFYTN    VTI +  L GR GW++ + P+ V Y     +  PP+LHW L++ G G  PPPTLM    +R KER +DIR++PTPR    A    PAD   PD
Sbjct:  196 VDEMGESCVLNGRMEVYLSLPDGACKRRLAITSPLVETAPPQCIALGAGSAAANGTFDLTGWRHGAPFYTNTASGVTIGRVELEGRAGWVMRKEPHKVYYCCTEASAHPPDLHWTLVSMGDGNEPPPTLMTSYQKRVKERPVDIRELPTPRWHPDASHFSPADAMLPD 363
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9714.17719.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.580e-15185.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.190e-13894.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.900e-4549.40protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9714contigE_fasciculatus_S2_contig9714:1460..5405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size747
Hectar predicted targeting categoryother localisation
Exons5
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842616.7121162-CDS-E_fasciculatus_S2_contig9714:1459..16331696842616.7121162-CDS-E_fasciculatus_S2_contig9714:1459..1633Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9714 1460..1633 -
1696842616.7248478-CDS-E_fasciculatus_S2_contig9714:2010..22021696842616.7248478-CDS-E_fasciculatus_S2_contig9714:2010..2202Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9714 2011..2202 -
1696842616.7382116-CDS-E_fasciculatus_S2_contig9714:2675..27441696842616.7382116-CDS-E_fasciculatus_S2_contig9714:2675..2744Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9714 2676..2744 -
1696842616.7501001-CDS-E_fasciculatus_S2_contig9714:4106..42501696842616.7501001-CDS-E_fasciculatus_S2_contig9714:4106..4250Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9714 4107..4250 -
1696842616.761514-CDS-E_fasciculatus_S2_contig9714:5237..54051696842616.761514-CDS-E_fasciculatus_S2_contig9714:5237..5405Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9714 5238..5405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9714.17719.1prot_E_fasciculatus_S2_contig9714.17719.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9714 1460..5405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9714.17719.1

>prot_E_fasciculatus_S2_contig9714.17719.1 ID=prot_E_fasciculatus_S2_contig9714.17719.1|Name=mRNA_E_fasciculatus_S2_contig9714.17719.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=249bp
ARKEVWGGPGWSVDDVGGDGGGGGSSGSSCAKTPRNSPNNGKAAAAADAP
AAVDDEAAGISLVGRVEVYLCLLDGSSKRRLRVTCPDIERCPPECILLGA
GANEANGTYELAGFRNGAPFYTNDKDDVTIAKECLGGREGWIIGRPPNYV
LYGQPVNTNLPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLMDIRKMP
TPRARWAIPADVTFPDDTDHNLVGTAMIVRPPTPSTPPHSSRTACDGR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9714:1460..5405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9714.17719.1 ID=mRNA_E_fasciculatus_S2_contig9714.17719.1|Name=mRNA_E_fasciculatus_S2_contig9714.17719.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3946bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9714:1460..5405- (Ectocarpus fasciculatus EfasUO2)
GCGCGAAAGGAGGTGTGGGGCGGTCCGGGGTGGTCTGTCGATGACGTCGG
CGGCGACGGCGGTGGCGGCGGTTCCAGTGGCTCCAGTTGTGCGAAGACCC
CCCGGAATTCGCCGAACAACGGCAAGGCAGCGGCGGCTGCCGATGCCCCT
GCTGCTGTCGATGACGAGGTGGGTACCTGAAGACTTGTGGCAAGAATCCG
CTCCGGGTATCAGACCAGGCTTGCCATGACACCTTATGTAATCGTCAAGC
AATAAATGTAGTGCTGCTTCAAAAGTCGTGCTGCTGGCGTAAGTGCCTCC
TCGAATCAGAGGCAGTCTTGGGACCCTATATATATTCGGCAATGCCCCTG
CTGCTGCCGCCGCCGACGACCGGTGGTGTTGTCTGTACCTGGACAAAAAA
AACACTTCCAGCAAGAAGCTGCTCCTGCTGTCAAACCAGTCTTGCCATAC
ACCGGTATACAATCGTCGAAACCGTATGTAGTCGTCAAACACGAAAGCCT
GGCCTCAATAACGATGCGGCCGACCTAAGTGCCTCCTCGAAACCAATATT
TTAGCTGTCTTGGGACCCTAAAAGTTCCGTGACGCCCAGGTATTCGGATT
GTTGGCAGGGCCCGAGGCCATTATTGCTGAATTCATTCCAAGGTTGTGGT
GAGCGGGGTCCGAGCACGTGAGACGTACCCGACCGTACTCTGCCTGCGCA
TCCGGGTAATATATATATGTCGTTTCGCGGCGCCGAAGGTGTCCTATGCC
TAACTTGTGTTTTTTTTTTTTTTTTTTTTTGGATGACGTTGGTTTTGGCT
AAACCTTTTTTGTTGGTTTGCTCTCGCGTTTGGTGTGTCAAAATGTGTTT
CTNNNNNNNNNNCCCAGCACTATTATTGCGCATTCAATTAAAAGTTTTTG
GGGGGCGGGCCCCGCCGAAGGGGTCCTATCCCTACCTTGTGTTTTTTTTT
TTTCTCCTGTTGGATGACGTTGGTCTTGGCTAAACCTTCTCTGTTGGTTG
GCTCACGCGCTAGGTGTGTCAAAATGTGTTTCTACAGACTGTGTCCTGTT
TGGATTTGCCGCCACTTGCCCAATTTGGTTGTGAACTTGCTTTCTCGCCT
TGTATCCCCGCCTCCCCGCCCCCTCATTCGTGTCCATTTTGTTTTGTTTT
GTCAGGCGGCGGGCATCTCTCTAGTGGGAAGGGTTGAGGTGTACCTCTGC
CTGTTGGACGGGTCGAGCAAACGTCGCCTGAGAGTAACCTGCCCCGACAT
CGAGCGCTGCCCCCCCGAGTGCATCCTGCTTGGAGCGGGGGCGAACGAGG
TGTGTGTTTATGTGTGTTTTGCCTGCCTGTGGACGCTTTTTTTTTTTTTT
TTTTTTTTTTTTTTGCTTAGATGGTGCAAATGGGTTGGCCAACGAAAGAC
TGACTTATTCCGTGTGTGTGTTTGTCTTGTTGAGTGGATTACTGCTGATG
GATGTTCGAATAGGTTTGTGCTGGAATTTAGCCGGAGCAAATCGACAAAT
TAGCAGCACTCACTAGGGGCGATCGACTCTTGTGCGATCTCTTTGGAGTA
TGTTGTTGGCATGGACAACAGCCGCCCGCAATAGCACGCGTACCAGCACT
CGCCATCACCGCTGTCTGTTGGTCTCTAGCGTTTCCCCTTGTTGTCGTGA
GGACCATAGCGCTTTGAACACCGTCGGACGACGTTACGTGTACATGTCCA
CCTATATCTCGGACGGCTAGTTGTGCTCTATCATGGTCTTATTTCGGACG
GCACACGGGGGGCAGGGTACTGTAGAGTGACAATTCGTGTATCAGAGTGT
CGCAGTGCAATGCTATCGTTGTTTTTTTCGCTGTTGCCTGTTTCGGCGTG
TGTGTGTGTGTGTGTGATAAAACAACGGGGTTGGTGGTCATGTCTTCTGC
TTTGGTATCGCGCCAAGTTTGAGTACAAGGGGAGGGTCGGCGGATTGTTG
GAAAATTGATCGTTCGTGTTTTCGTTTTCGGTGGATCTCTCTCCAGCTTG
TCCACCCCTCCGCTGCTGCTGCCGGAGGATATTTCATCTGTCCATTTCTT
TTGGGGAATGTCGTAAACGCGATTTTCTATCCTGTTCGGCGTGAACTCGT
ACACTTGCATCCCAGAATCGAAGCGCATCTACCCGCTTCCGCCCGAGTGC
GTGCTGAAAATTTTGCGCCCCGCATTCCCATCTCCCGCTGTAGGAAGAGA
CGATCTAGGCGTGGGTGGGACGAACTATTTTTTTGTTTGTCCCCCTGTTT
ATTAGACTAAAAGGCCGTTCTACTTTATTACCGCATCTCGCATTTTCTTG
ATTACGCTAACGTATTTGCCTCTCTCAACTCCGAGCCACGCAACAGAAAA
AAGAACACCGCTGCGCATGCCTCCAATTTTGATGCGAGCTTTGACAGCAG
AATAGAGCTAAGTTTTTGTTGGTGTCTATGTATGGTGAGAAAGATGGGAA
TAACTATGGCACTTCTCTGTCTCGAAAAGGGATACATACATGCCAATGGC
CAAATTACGCTCACGTGACGTGACGGATTATTTCGGTGATGAAGGCGATC
CCTCCCACCGTTCCCCTATTTCTGCTTCCCCCCCCCCTGCCGTGTGTTGC
CGTGCCCCTGTTTCTGCTTTGTCCCTCCTACCGTGCGATGCTGCCCCGGG
TGATACGGTAGGCGAATGGCACGTACGAGTTGGCGGGCTTTCGGAACGGC
GCACCGTTCTACACCAACGACAAGGACGATGTGAGCATTCATTCACCCAA
CCGTAGCTAGTATGGGTGGGGACGGACGGCAGTGGTGTCGATAAAATGTC
TTGCAATCACCGTCGTGTGTGTGTGTTGTTTTCGTAGGCGTCGTGAGGTA
AGAAAAAGACAAAAAGTGTGGTAGATTCCGTAGAAGGAGCATGTGGCGGC
ACGTGGCGGCACGGTGGTAGATGGGGCCAACCGGGGCGGTGGGCAACTGC
GGTAGTTCCAGGCACGCCTGAGGCGAGATAGCAGCGATGCCCCTTGGTGT
TGACAAGTTTCTTCTCGGAGTTTTATACGTCTGCCTCGTTTTTTTTCATT
TTTTTCACAACGGAAACACAACAACAATCTCATGTCTTTCTTCCTACAGG
CGAACAGTTTTTTTTCGCAACGAGAAGGGCGAAAAAACTGAAGTCGCCTC
CGACACGCGCTTTTCCCGTTTCTCGTTGCAAAAAACGACAATGAACAAAA
CAGGTTACCATCGCGAAGGAATGCCTGGGCGGCAGGGAGGGCTGGATAAT
CGGGCGACCGCCAAACTACGTGCTCTACGGCCAGCCGGTCAACACAAACC
TTCCTCCGGAACTGCACTGGGCTCTCATGAACGGCGGCACCGGGCTCAAC
CCGCCACCCACGCTGATGATGCACAGCCATAGACGGGCGAAGGAGGTGAG
CTACAGTAGCGAGTACAGGGGCTCGTTGAGGCGGGCTGTGAGTTGTTGGC
CCCTCTCTCTGTCTGTTTGGTTCTCTCTCTCCCTCTCTCTCTCTCCCTCT
CTGTGTGTGTGGTTGGTTGCTAGCAGCCACCGCGTATACTGGTTGATCAA
ATGGAAAAAAAAACGCCAGCCAGGCTTCGCCGAACAACAAAGCTCTGGCG
GTTACGCGGTATAGACAGCAGGGGTGGGCTCATCTTTCGAGAGATGCATG
CAAGCGAGCAGGATACGTTCGCACTCCCTTCGTGACTGCGCCTCCCCCCC
ACGCGCGCTCTACCGACCCCCCTCCCTCTGCTGCTACGTGGCGTCCAACA
ACAACGGTTACGGCGACAACAGAGGCTCATGGACATCCGAAAGATGCCGA
CCCCTCGGGCGCGCTGGGCGATCCCTGCCGACGTGACCTTCCCAGACGAC
ACGGACCACAACCTCGTCGGCACTGCGATGATCGTACGGCCCCCGACGCC
ATCGACGCCCCCGCACAGCAGCCGCACCGCATGTGACGGAAGATAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9714:1460..5405-

>mRNA_E_fasciculatus_S2_contig9714.17719.1 ID=mRNA_E_fasciculatus_S2_contig9714.17719.1|Name=mRNA_E_fasciculatus_S2_contig9714.17719.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=747bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9714:1460..5405- (Ectocarpus fasciculatus EfasUO2)
GCGCGAAAGGAGGTGTGGGGCGGTCCGGGGTGGTCTGTCGATGACGTCGG
CGGCGACGGCGGTGGCGGCGGTTCCAGTGGCTCCAGTTGTGCGAAGACCC
CCCGGAATTCGCCGAACAACGGCAAGGCAGCGGCGGCTGCCGATGCCCCT
GCTGCTGTCGATGACGAGGCGGCGGGCATCTCTCTAGTGGGAAGGGTTGA
GGTGTACCTCTGCCTGTTGGACGGGTCGAGCAAACGTCGCCTGAGAGTAA
CCTGCCCCGACATCGAGCGCTGCCCCCCCGAGTGCATCCTGCTTGGAGCG
GGGGCGAACGAGGCGAATGGCACGTACGAGTTGGCGGGCTTTCGGAACGG
CGCACCGTTCTACACCAACGACAAGGACGATGTTACCATCGCGAAGGAAT
GCCTGGGCGGCAGGGAGGGCTGGATAATCGGGCGACCGCCAAACTACGTG
CTCTACGGCCAGCCGGTCAACACAAACCTTCCTCCGGAACTGCACTGGGC
TCTCATGAACGGCGGCACCGGGCTCAACCCGCCACCCACGCTGATGATGC
ACAGCCATAGACGGGCGAAGGAGAGGCTCATGGACATCCGAAAGATGCCG
ACCCCTCGGGCGCGCTGGGCGATCCCTGCCGACGTGACCTTCCCAGACGA
CACGGACCACAACCTCGTCGGCACTGCGATGATCGTACGGCCCCCGACGC
CATCGACGCCCCCGCACAGCAGCCGCACCGCATGTGACGGAAGATAG
back to top