mRNA_E_fasciculatus_S2_contig9713.17718.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9713.17718.1
Unique NamemRNA_E_fasciculatus_S2_contig9713.17718.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9713.17718.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 5.460e-36
Identity = 71/90 (78.89%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 AVGGHVQVLEYFNTIGLSWGDESSLLPAVRRAQVELGCTAAKRSRLERVVSWILANRVPAGGDDVSVEERRADCLLLDS-TGDAGVGADD 267
            AVGGHV V EYFNTIGLSWG+ESSL PAVRRAQ ELGCTAAKRSRLE V SWILANR PA GDDVSVEERRA CLLL + +G+ G G D+
Sbjct:  240 AVGGHVHVKEYFNTIGLSWGEESSLFPAVRRAQTELGCTAAKRSRLECVASWILANRAPARGDDVSVEERRAACLLLKNPSGEVGDGEDN 329
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BLAST of mRNA_E_fasciculatus_S2_contig9713.17718.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 5.490e-36
Identity = 72/90 (80.00%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 AVGGHVQVLEYFNTIGLSWGDESSLLPAVRRAQVELGCTAAKRSRLERVVSWILANRVPAGGDDVSVEERRADCLLLDS-TGDAGVGADD 267
            AVGGHV VLEYFNTI LSWG+ESSLLPAVRRAQ ELGCTAAKRSRLE V SWI+ANRVPA GDDVSVEERRA C LL + +G+ G GAD+
Sbjct:  309 AVGGHVHVLEYFNTIWLSWGEESSLLPAVRRAQTELGCTAAKRSRLECVASWIVANRVPARGDDVSVEERRAACFLLKNPSGEVGDGADN 398
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9713.17718.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.460e-3678.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.490e-3680.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9713contigE_fasciculatus_S2_contig9713:133..716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size584
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842616.6490877-CDS-E_fasciculatus_S2_contig9713:132..4021696842616.6490877-CDS-E_fasciculatus_S2_contig9713:132..402Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9713 133..402 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842616.6628299-UTR-E_fasciculatus_S2_contig9713:402..7161696842616.6628299-UTR-E_fasciculatus_S2_contig9713:402..716Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9713 403..716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9713.17718.1prot_E_fasciculatus_S2_contig9713.17718.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9713 133..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9713.17718.1

>prot_E_fasciculatus_S2_contig9713.17718.1 ID=prot_E_fasciculatus_S2_contig9713.17718.1|Name=mRNA_E_fasciculatus_S2_contig9713.17718.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=90bp
AVGGHVQVLEYFNTIGLSWGDESSLLPAVRRAQVELGCTAAKRSRLERVV
SWILANRVPAGGDDVSVEERRADCLLLDSTGDAGVGADD*
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mRNA from alignment at E_fasciculatus_S2_contig9713:133..716+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9713.17718.1 ID=mRNA_E_fasciculatus_S2_contig9713.17718.1|Name=mRNA_E_fasciculatus_S2_contig9713.17718.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=584bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9713:133..716+ (Ectocarpus fasciculatus EfasUO2)
GCCGTCGGGGGTCACGTCCAAGTGTTGGAGTATTTTAACACGATTGGTCT
TTCATGGGGGGACGAGTCTTCGTTGCTTCCAGCGGTGAGACGGGCGCAGG
TGGAGCTTGGTTGCACGGCTGCCAAGAGAAGCCGACTGGAACGCGTAGTC
TCGTGGATTTTGGCCAACAGAGTACCCGCCGGTGGCGATGATGTCTCTGT
GGAAGAACGCAGAGCGGACTGTCTTCTCCTGGATTCGACCGGAGACGCCG
GAGTTGGAGCAGATGACTGAAAGGCGAGGGGGGGGTTCTTTTCCAGTACC
CTTGACAGCGCGTTCATACGGCCGAGTTGTAGCGTCGTGAGGCTCGTATG
CGTTGTACTGCTGTCGAGAAGGTTGAGCAGTTATGCTTTCTTGGGACGAC
TAATTTTACTAGCTTTTAATGGGGAATTTTCAAGCTCTTCATCGGGAATT
TCAGATGGAGAGGGAGGTTTCCTCTGTTTGCTGTGCAATCTCCGTGCGGC
GGAGTCTTTGCACAAAGTCGTGCTCGAAGACCACCAAAGACATAAGGCAC
AAAAGCAGAGCATAGCAGTGATATTGGAGCAGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9713:133..716+

>mRNA_E_fasciculatus_S2_contig9713.17718.1 ID=mRNA_E_fasciculatus_S2_contig9713.17718.1|Name=mRNA_E_fasciculatus_S2_contig9713.17718.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9713:133..716+ (Ectocarpus fasciculatus EfasUO2)
GCCGTCGGGGGTCACGTCCAAGTGTTGGAGTATTTTAACACGATTGGTCT
TTCATGGGGGGACGAGTCTTCGTTGCTTCCAGCGGTGAGACGGGCGCAGG
TGGAGCTTGGTTGCACGGCTGCCAAGAGAAGCCGACTGGAACGCGTAGTC
TCGTGGATTTTGGCCAACAGAGTACCCGCCGGTGGCGATGATGTCTCTGT
GGAAGAACGCAGAGCGGACTGTCTTCTCCTGGATTCGACCGGAGACGCCG
GAGTTGGAGCAGATGACTGA
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