mRNA_E_fasciculatus_S2_contig971.17716.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig971.17716.1
Unique NamemRNA_E_fasciculatus_S2_contig971.17716.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig971.17716.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA4_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 3.130e-124
Identity = 185/195 (94.87%), Postives = 190/195 (97.44%), Query Frame = 3 
Query:    3 VIADSLASQMFAEDDDEGPGLAVDREHFPLLRDRAALAAVGDSMLSALSSDRFSAEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGMSQGRPDVRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWETHALSAKGGFARVGFLSMKSFNSKGVSAPTWGLEKGSAAAGNATA 587
            VIADSLASQ+FAEDDDEGPGL VDREHFPLLRDRA LAAVGDSMLSALSSDRFS EVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGMS+GRPD+RLELASGEGLLFNGYELFHEVHGVKPGTAPAFWETHALSAKGGFARVGFLSMKSFNSKGVSAPTWG+EKGS+A GNA A
Sbjct:  293 VIADSLASQIFAEDDDEGPGLDVDREHFPLLRDRAGLAAVGDSMLSALSSDRFSGEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGMSKGRPDIRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWETHALSAKGGFARVGFLSMKSFNSKGVSAPTWGVEKGSSA-GNAKA 486
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BLAST of mRNA_E_fasciculatus_S2_contig971.17716.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS11_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 1.090e-122
Identity = 179/186 (96.24%), Postives = 183/186 (98.39%), Query Frame = 3 
Query:    3 VIADSLASQMFAEDDDEGPGLAVDREHFPLLRDRAALAAVGDSMLSALSSDRFSAEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGMSQGRPDVRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWETHALSAKGGFARVGFLSMKSFNSKGVSAPTWGLEKG 560
            VIADSLASQMFAEDDDEGPGL VDREHFPLLRDRAALAAVGDSMLSALSSDRFS EVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLG+SQGRPD+RLELASGEGLLFNGYELFHEVHGVKPGTAPAFWE HAL+AKGGFARVGFLSMKSFNSKGVSAPTWG+EKG
Sbjct:  302 VIADSLASQMFAEDDDEGPGLDVDREHFPLLRDRAALAAVGDSMLSALSSDRFSGEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGVSQGRPDIRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWENHALNAKGGFARVGFLSMKSFNSKGVSAPTWGVEKG 487
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig971.17716.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.130e-12494.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.090e-12296.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig971contigE_fasciculatus_S2_contig971:21682..24984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size788
Hectar predicted targeting categoryother localisation
Exons4
Cds size561
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig971.17716.1prot_E_fasciculatus_S2_contig971.17716.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig971 21880..24955 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842616.4776027-UTR-E_fasciculatus_S2_contig971:21681..218791696842616.4776027-UTR-E_fasciculatus_S2_contig971:21681..21879Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig971 21682..21879 -
1696842616.522349-UTR-E_fasciculatus_S2_contig971:24955..249841696842616.522349-UTR-E_fasciculatus_S2_contig971:24955..24984Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig971 24956..24984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842616.4868946-CDS-E_fasciculatus_S2_contig971:21879..220781696842616.4868946-CDS-E_fasciculatus_S2_contig971:21879..22078Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig971 21880..22078 -
1696842616.4958608-CDS-E_fasciculatus_S2_contig971:22865..229801696842616.4958608-CDS-E_fasciculatus_S2_contig971:22865..22980Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig971 22866..22980 -
1696842616.5047548-CDS-E_fasciculatus_S2_contig971:23865..239501696842616.5047548-CDS-E_fasciculatus_S2_contig971:23865..23950Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig971 23866..23950 -
1696842616.513661-CDS-E_fasciculatus_S2_contig971:24793..249551696842616.513661-CDS-E_fasciculatus_S2_contig971:24793..24955Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig971 24794..24955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig971.17716.1

>prot_E_fasciculatus_S2_contig971.17716.1 ID=prot_E_fasciculatus_S2_contig971.17716.1|Name=mRNA_E_fasciculatus_S2_contig971.17716.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=187bp
MFAEDDDEGPGLAVDREHFPLLRDRAALAAVGDSMLSALSSDRFSAEVGG
RDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGM
SQGRPDVRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWETHALSAKGG
FARVGFLSMKSFNSKGVSAPTWGLEKGSAAAGNATA*
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mRNA from alignment at E_fasciculatus_S2_contig971:21682..24984-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig971.17716.1 ID=mRNA_E_fasciculatus_S2_contig971.17716.1|Name=mRNA_E_fasciculatus_S2_contig971.17716.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig971:21682..24984- (Ectocarpus fasciculatus EfasUO2)
AGGTCATCGCCGATTCTCTCGCGAGCCAGATGTTCGCAGAGGACGATGAC
GAGGGTCCCGGCTTAGCCGTAGATCGGGAACACTTCCCCCTCCTCCGAGA
CAGAGCGGCGCTGGCGGCGGTGGGGGACAGCATGCTTTCCGCCCTTTCTT
CGGACCGGTTCTCGGCAGAGGTCGGGGGCCGTGATCCTCCCGTGAGTCTC
TCATTCTTCTTTCTTTTATTCTCAGCAAGATTTTGATTTGTGTTTGTGTT
TCTTCCCTTCCCGGGAACGAAGAAACATCAGCATGCAACGTCAATGTTCG
CCCACCTATTCTTTTTCTTAAGTGTTTTTTTGGGGGGAGGGGGCTAGTGA
ACAGCAGTGTTTGTGTATACAGCAGGAGGCTAAGTCTTGTCTAGCGTGAG
CCTATGACTGAAGTTATCCCCTGTCATTTTTTGTTTTTTACTTGGTAGCA
TAGGCTAGTAGTAAGCAGTTTTACGTTTCGTCTATACGAAGGGAGGCTGA
GTATTCTTAGCGAAAGCTTGAGTCTGCGGCTGGAGTTGTAACCGAAAAGG
AGGCGAAAAACTAGCGAGACAGCGAGAGCTTCCATGGGCCACCTCCAGGG
CAGCCATGCAAGAGAGGAGGGGATGTACGGTGTGTTCTGATCGATGTACC
ATGTAATTGCCTGTGTGGTCTCTTTCTCCTGTCCTCACGGATGGTGTGCT
TGCTGCCCCACCGCTTGTTCTGTGGGAGATATGATATTGCTTGTCGCCCA
TGCCTTACGCTCCCACTGCCGTGCCATCCCAAAACCCGAAGAAAGCAACC
AACGCATCAGGCCGTTGGTACAGTACACCAGAGTTAATCAGGCGGCTTGT
ACCGCGTCTCTCAAAACAGCCCTAGAATAAGCAAACAAGGCGTTCGGTTG
TTGGCACCAAGAACGTCAGAATAGTTGTCGGACTTGCTGCATATGCCGCG
TCTCTTACCAAAGTTCGAGGTTATTGTCTCCCGACATGACACGCGTTTAC
GTGGAGTGGTGTGCGGCACTGCTCGCTTGATTAGGTGCCTACAAGAGCGA
ACAGAGAGTTCAACGCAGTGTGCTACGGTGCTCAGGCCAAGATGCAGGAG
CACAGGGACACTTGGAAAGGTGAGGAGGGCGAGCGGCAACCGTTCTTTGT
TCTTCGTATACAATGTATAAGTAGTGCTTTAGTACGAAAGAGGTCTGAGA
GCGTGTCTGAGAAATGTTTGGAAGCGCTGGGAACATGATGACCTTTCGAG
GCAAAGAGAGGGGCTCCTCCGTGCATGGCGTGAAAGAGGCGCGTTCGTCG
TCATGTCTAACGTGTGTGTCGTTGCTGTCCCTGTTGCTTTCTGTTGTTGT
TGTTGTTGGTTTTGCTTTGTGCTCCTGCTGGCGGCGTGGCTGCAAAACTT
CACGATCATCACACACCCATTTCGCTAGTGTCGGCACATAGCTCGCTTCG
TGCCCTCTGGCACACCACATCGCTGTCTCTGTTGGCATACCGTACAGTGC
CTTGAAGTCCCAGCCCACTGCTCTGTTGTACGCCTTTTTGTTTTTGGAAT
GCGCCTTTTTTGACAATTGAACAAACGCAACGAAGGAGGAAAGGTGGAAA
AGAAATGAAATGATGCGCTTATTTATACTTTGCTCCAGCACAAAACCTCT
TGTGGGAAGTCAAACATGTATTGTACGAAAGGTTTCGGCCGTCGCCCAAC
ACAAACAATGTTAATACAATGTCTGATTGATTTTTGTATCATGTTTTTAT
TCGGAAAGAGGTAGAGTATCACTAAATAGGCGTTAGCACGCCAAGTTTGT
AGAGTTGCTTCTCCGTCTCTGTGACCACCATAGTTTTCTGCAGATTTCTC
TCTTAACAATCGCTTTCGTTTCTTCTCGCTGAGTGATCGACCCCCCCCCC
CCCCGCTGTCTCTGCTTCTGGTCTTGGTCTGCCTGTTTCCCATGGCCACG
TGCGTGCGACAAATCGAACACACGAACAAACAACTGGGCGATGAAACAAA
AAAGAGTGGACGCTGATCGTCTCCATCGGCAACACGATCCCCTTCGACCT
CGGCATGTCTCAGGGCCGCCCGGACGTCAGGCTGGAGCTAGCCTCGGGGG
AAGGACTCCTTTTCAACGGGTGGGTGGGTGGGTGGGTGGCGAAGGGAGTA
CAAATACCGGGGAGTAGGCTTGAAGAGTGTTTCTAGACCAAGCGTGTGCT
TGTTCGAGGGTGTTTGTTCCGGGGTGCTATACTCTGCCGACGGAGATTGT
TTTGTCTACATCTACATCTTGACGAGGTGTCCTCGTGGGTAGACAGAGGT
CAGCGCGTATGTTTTATTGTTTGAAGCCAACGAACGCAAGAAATAGCTGT
AAGGAGAACGCGTCGGCAGCGTCGGCAGGGTGCGACGCGGTTGTTTGGTA
GAGATGTTAGATTTTGTCGAGGATGTAGATACTTGGGTTTGTTTGCCAAG
GGACAGACGCGTATGGAAGAAATACATCGCCCCCAAAAGCACAAGTCGAG
GACCGAACGCACACTTTTTCCTACTGAGGGCAGATCTAGGTCACCTCTTT
TGAAGGAGCACACGCGGTAGAGATATACGCCTTGCTTGTGTTCATTCTGC
TGCAAGGCCACAGGGGAATGTTGGTTCGGTTTGTTAAACGTTAACATCCC
TCAACAGGTGGTGTCGGATGCCCGTGGGTTTGAAGATATGGCTACCTTGG
TGACCCCCCCAACCCCGACCCACGAAACGCCATCATAACCAGAATCTGGT
TCATCCTTGTGAACCGTAGCCTGGGCCGGCGAAAACCCGGCTCCTCTTGG
TCCCGGCATTATAGGCATGCGAGGTCTATGGTCTGACGACTGTGGTATGC
GTTTACATGAGTGCCCCCCCGACACCCCGACCCGTCCCCGTCGTTTATGA
GACCAGGTACGAGCTCTTTCACGAGGTGCACGGGGTCAAACCAGGGACCG
CCCCCGCCTTTTGGGAAACCCACGCGCTCAGCGCCAAGGGCGGCTTCGCC
AGGGTGGGCTTTCTGTCCATGAAGAGCTTCAACAGCAAGGGGGTGTCCGC
GCCCACGTGGGGTCTCGAAAAGGGCAGTGCAGCAGCAGGCAACGCTACCG
CTTGACAAAGCAGCAGATGCGGCATTGTCTGGGGGGCTGACTCGACGAGG
GCGGAGTTTTGACGTCTAGTGTATCCATGTTTTATCACCCGGTTGGGCAC
ACGCGTGCGTCATGGCGGCGGTGGTATCCGTTGCGATTGGCGTTGGGGTG
TTTTAGCTGTAAATGCCTGTTTCGTGGAGCTCGAGAAGGCGCAGGAGAGA
GAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig971:21682..24984-

>mRNA_E_fasciculatus_S2_contig971.17716.1 ID=mRNA_E_fasciculatus_S2_contig971.17716.1|Name=mRNA_E_fasciculatus_S2_contig971.17716.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=561bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig971:21682..24984- (Ectocarpus fasciculatus EfasUO2)
ATGTTCGCAGAGGACGATGACGAGGGTCCCGGCTTAGCCGTAGATCGGGA
ACACTTCCCCCTCCTCCGAGACAGAGCGGCGCTGGCGGCGGTGGGGGACA
GCATGCTTTCCGCCCTTTCTTCGGACCGGTTCTCGGCAGAGGTCGGGGGC
CGTGATCCTCCCGTGCCTACAAGAGCGAACAGAGAGTTCAACGCAGTGTG
CTACGGTGCTCAGGCCAAGATGCAGGAGCACAGGGACACTTGGAAAGAGT
GGACGCTGATCGTCTCCATCGGCAACACGATCCCCTTCGACCTCGGCATG
TCTCAGGGCCGCCCGGACGTCAGGCTGGAGCTAGCCTCGGGGGAAGGACT
CCTTTTCAACGGGTACGAGCTCTTTCACGAGGTGCACGGGGTCAAACCAG
GGACCGCCCCCGCCTTTTGGGAAACCCACGCGCTCAGCGCCAAGGGCGGC
TTCGCCAGGGTGGGCTTTCTGTCCATGAAGAGCTTCAACAGCAAGGGGGT
GTCCGCGCCCACGTGGGGTCTCGAAAAGGGCAGTGCAGCAGCAGGCAACG
CTACCGCTTGA
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