mRNA_E_fasciculatus_S2_contig9708.17714.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9708.17714.1
Unique NamemRNA_E_fasciculatus_S2_contig9708.17714.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9708.17714.1 vs.
Match: DUF4485 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX91_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.510e-29
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   10 QIRVECWIAKLNGPYPLPNVAWRKNRNAFAALLARAVEEVDFREPFDRRPPGGSSALL 183
            +IRVECWIAKLNGPYPLPNVAWRKNRNAFAALLARAVEEVDFREPFDRRPP GS   L
Sbjct:   57 KIRVECWIAKLNGPYPLPNVAWRKNRNAFAALLARAVEEVDFREPFDRRPPEGSLPTL 114
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9708.17714.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
DUF44853.510e-2991.38domain-containing protein n=1 Tax=Ectocarpus silic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9708contigE_fasciculatus_S2_contig9708:5435..5617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842616.3372414-CDS-E_fasciculatus_S2_contig9708:5434..56171696842616.3372414-CDS-E_fasciculatus_S2_contig9708:5434..5617Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9708 5435..5617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9708.17714.1prot_E_fasciculatus_S2_contig9708.17714.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9708 5435..5617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9708.17714.1

>prot_E_fasciculatus_S2_contig9708.17714.1 ID=prot_E_fasciculatus_S2_contig9708.17714.1|Name=mRNA_E_fasciculatus_S2_contig9708.17714.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=61bp
RTHQIRVECWIAKLNGPYPLPNVAWRKNRNAFAALLARAVEEVDFREPFD
RRPPGGSSALL
back to top

mRNA from alignment at E_fasciculatus_S2_contig9708:5435..5617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9708.17714.1 ID=mRNA_E_fasciculatus_S2_contig9708.17714.1|Name=mRNA_E_fasciculatus_S2_contig9708.17714.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=183bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9708:5435..5617+ (Ectocarpus fasciculatus EfasUO2)
CGAACACACCAGATAAGGGTAGAGTGCTGGATCGCTAAGCTCAACGGCCC
GTACCCGCTGCCCAACGTCGCGTGGCGAAAGAACCGTAACGCCTTCGCCG
CTCTCCTCGCCCGTGCTGTGGAAGAGGTCGACTTCCGAGAGCCGTTCGAT
AGGCGCCCCCCAGGTGGGTCGAGTGCTCTTCTT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9708:5435..5617+

>mRNA_E_fasciculatus_S2_contig9708.17714.1 ID=mRNA_E_fasciculatus_S2_contig9708.17714.1|Name=mRNA_E_fasciculatus_S2_contig9708.17714.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=183bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9708:5435..5617+ (Ectocarpus fasciculatus EfasUO2)
CGAACACACCAGATAAGGGTAGAGTGCTGGATCGCTAAGCTCAACGGCCC
GTACCCGCTGCCCAACGTCGCGTGGCGAAAGAACCGTAACGCCTTCGCCG
CTCTCCTCGCCCGTGCTGTGGAAGAGGTCGACTTCCGAGAGCCGTTCGAT
AGGCGCCCCCCAGGTGGGTCGAGTGCTCTTCTT
back to top