mRNA_E_fasciculatus_S2_contig970.17705.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig970.17705.1
Unique NamemRNA_E_fasciculatus_S2_contig970.17705.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig970.17705.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 4.190e-22
Identity = 62/85 (72.94%), Postives = 66/85 (77.65%), Query Frame = 2 
Query: 1322 GAQAETRRTYLQGQVTDDSMGPPISPFLEPSRAKKEAEKPAEEDSGIISGLESKESAIAGGEWEPLAETLQAGENYLSRDGGIRL 1576
            G  A   RT LQGQVTD  MGPPI+PF EPSRA++ A K AEED+ IISG ESKESAI  GEWE L ETLQAGENY SRDGGIRL
Sbjct: 1915 GTSAFDTRTDLQGQVTDP-MGPPINPFSEPSRAQQGARKSAEEDADIISGFESKESAIDWGEWELLTETLQAGENYRSRDGGIRL 1998
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig970.17705.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
NB-ARC4.190e-2272.94and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig970contigE_fasciculatus_S2_contig970:2..2618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score112.8
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D8LGG5
Model size1578
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size468
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842615.5080876-UTR-E_fasciculatus_S2_contig970:1..11091696842615.5080876-UTR-E_fasciculatus_S2_contig970:1..1109Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig970 2..1109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842615.5233788-CDS-E_fasciculatus_S2_contig970:1109..13311696842615.5233788-CDS-E_fasciculatus_S2_contig970:1109..1331Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 1110..1331 +
1696842615.5403988-CDS-E_fasciculatus_S2_contig970:2176..23451696842615.5403988-CDS-E_fasciculatus_S2_contig970:2176..2345Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 2177..2345 +
1696842615.5531032-CDS-E_fasciculatus_S2_contig970:2541..26181696842615.5531032-CDS-E_fasciculatus_S2_contig970:2541..2618Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 2542..2618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig970.17705.1prot_E_fasciculatus_S2_contig970.17705.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig970 1110..2618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig970.17705.1

>prot_E_fasciculatus_S2_contig970.17705.1 ID=prot_E_fasciculatus_S2_contig970.17705.1|Name=mRNA_E_fasciculatus_S2_contig970.17705.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp
MRLCVEFQSKWKRLVYGHPRHPFQCSVNRPYQVATRLEAVYIRRLEELRK
ELLGPEHPDVAQSLMMRAGLLGAQAETRRTYLQGQVTDDSMGPPISPFLE
PSRAKKEAEKPAEEDSGIISGLESKESAIAGGEWEPLAETLQAGENYLSR
DGGIRL
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mRNA from alignment at E_fasciculatus_S2_contig970:2..2618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig970.17705.1 ID=mRNA_E_fasciculatus_S2_contig970.17705.1|Name=mRNA_E_fasciculatus_S2_contig970.17705.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2617bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig970:2..2618+ (Ectocarpus fasciculatus EfasUO2)
AATCAGCCGGTCTCTCTGTCATTTAGTCTATAGACAAAAGGGCTAGAATC
CTGATGGTATGTTGAGTTATGTGGTGGAATGTGTCGGCACGAGACTCTGA
ACGCGTGCCGACGTGGATTCGAGCTACGCCTAGCCCGCGTTTTTTCTCCC
AAGGGAAGTTAAGTAAGGCCCTGCGGCACACCCGCCGCTGCCAGTGGGAT
TAATTTGGGATAGCTCTATATTTGCAACATAATGTATATTTCCAATTCTT
CTCTTCGAATAGTGCGTTTTTTGTTTTGCGCTGCCCTTCCCGTTTCATGG
CGGGCACTTTGCTTTGAAGATGATACTACATAGCTTTGCCCTCAACACGT
TGCAATGACGAGTGCATTCTTCCGAGAGGGACTTGGGGCGACGTCCGGTG
TTCTTTTCGCGTAGCTCCATTTTGGCCCAGTTTCCTCTCTTTATCAAGTA
CTCTCCGCTGACCGTCTTGCTTCTTGCGAAGATCGTGTCGCTCCGGCCCC
TCGTCCTCCCTTCGTCATTTTTCTTAACTTCCTCCCAAACCTTCGCCGTC
ATCCATCTCGGTGTGGCCGCCCGCCCCATTGGGGGGCGGGGGGCCAATAC
TTAACCCTAGTAGTGGTTGATTGTGCATGCTCCATTGGCAGCAGGCGATG
GCATGCAACACGCAACAGGAGGTGGCAATACCTAACCCAACTTGTAGCCA
TGTGTGCTGTGTGTGGATGACGTGTGAGATCGTACGTCTGCAGTATAAAG
GTCAAGCAGGGATGATACACACAACAGGGAATACGGAAGAAGTTGGAACT
GTCAAGTTTTTGCATGTTTCCGGATGTGCCCCGCCGTCATCTCGCCAATA
AGCCCGACGGAAGCACACGCTCTATGCTGTACGGGTAATGGTTTCAGCAT
GTTTGTATTTTTCATCCGCCAAAAGCCGTAACGGATTATCTAGGGCGAAC
AAACACCAAGAAAGTCACATTTGGGCCAAAAAAGAAGTCATTGCATTCTA
AAATCAACATGTGCGCGTTGTACGATAAAGACTTCTGCCTTGAAAGAAGC
GTATGTAGAATCAAAATTTCTTGAGCAGATTCTAAGCTTGTTGACACCTA
ACATTCCTATGCGCCTTTGTGTCGAATTCCAGAGCAAGTGGAAGAGACTT
GTGTATGGTCATCCGCGACATCCGTTTCAGTGCTCGGTGAACCGTCCCTA
CCAAGTCGCCACCCGCTTGGAGGCAGTCTATATTCGGCGGTTAGAGGAAC
TCCGCAAGGAGTTGCTGGGTCCGGAACACCCTGATGTGGCCCAGTCGCTG
ATGATGCGGGCAGGCTTACTGGGGGCGCAGGTGAGGGCAGTCCGGTTTTC
CTGGGACAATTTGTGTGGTGTTTATGTTTGCGAGTAGTTGATCGTAGTCC
TCGGGCGACCGGGCAGTAGGCAGGAAGGTAATGAATCCTTAAAACCCACA
TGGGGCTGCAGCGCTCAACAACCGGGTTTGGTTTTTCAAAACTCGTTTTT
TTCAGTTCGCACTACCGGTCGCCCGGGTAACCTCGAAACCGCTAGAGTTC
GAATCCCCATAGGGTGAAAAAATGTGAATTTGCGGGTGAAAGCTAAGAAA
AGCTGAAAGCACATGAGTACTGAACGTTGGCACCGTTGACGAGGAAAAGG
GATGGAACCTTCTCGTGTTGAAAGCAAAAATCAGCACGCACCGCAAGGGG
AAGGTGGGGCACGCTATTCAATAAATATAGTATAAGAAGCCTCGGTGTAT
CCCCCCCTCCTGTGTGACCCTGAATGGTTTGTAGTTGTACGAGAAATACA
CTGAAAAGCGTAGTACTCTACGTACACCCAAACACGTTTATGTAGTACAC
ATCTCGCCAAGGAAATGGGCGGACTGTCGCCATAATATAGTAGGACGAAA
ACTCCTACACATGGCCACGTTCCTTTCGCGCTTATGCGTCGACTTCCAGG
GATCATCCCAGGCAAACCCACTCTACGGCTTGAGAAGGGCTGAGCGCGGC
TTACCCAGATGTGGCCTGGGGGTTGAAAAGTCGGATGAGAATCAAATGCC
TTTGTCGGGAGTATCAAAGGGGCTGCACCTGTGGGTGGCAAGGCATGCCC
AGGTCTTGTAAGGAGTTGCTGAAGTCGTAATTGTTTTGCACGTGCAATCG
GTCGGTCCGAATCTCGCTCCTCCAGGCGGAAACTCGGCGAACGTACTTAC
AAGGGCAGGTCACTGATGATTCGATGGGCCCCCCGATCAGTCCGTTCTTG
GAACCCTCGCGGGCAAAGAAGGAAGCTGAGAAGCCCGCCGAAGAGGATTC
CGGCATCATCAGCGGGTTGGAGTCGAAAGAATCGGCGATCGCTGGTGAGT
GCGCCATGTTTGTTGGCTCCTCAAAGTAACTAAATACAAGATGCCCTCGA
CTGGTCCGTCAGCTTTTCCACCTTGGCGCCGACGGCTGAGTCGTTTTAGG
ACAAGCTGTACACATCAGCCGTTGCCGTCAACATAACTCAACGTGCGAGA
TCTGTACCTCTCAATCGCGATTCTTCCGGTTTTGAAATAGGGGGCGAGTG
GGAACCACTGGCGGAAACGTTGCAGGCTGGTGAGAACTACCTGTCAAGGG
ATGGCGGTATCCGCCTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig970:2..2618+

>mRNA_E_fasciculatus_S2_contig970.17705.1 ID=mRNA_E_fasciculatus_S2_contig970.17705.1|Name=mRNA_E_fasciculatus_S2_contig970.17705.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig970:2..2618+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCCTTTGTGTCGAATTCCAGAGCAAGTGGAAGAGACTTGTGTATGG
TCATCCGCGACATCCGTTTCAGTGCTCGGTGAACCGTCCCTACCAAGTCG
CCACCCGCTTGGAGGCAGTCTATATTCGGCGGTTAGAGGAACTCCGCAAG
GAGTTGCTGGGTCCGGAACACCCTGATGTGGCCCAGTCGCTGATGATGCG
GGCAGGCTTACTGGGGGCGCAGGCGGAAACTCGGCGAACGTACTTACAAG
GGCAGGTCACTGATGATTCGATGGGCCCCCCGATCAGTCCGTTCTTGGAA
CCCTCGCGGGCAAAGAAGGAAGCTGAGAAGCCCGCCGAAGAGGATTCCGG
CATCATCAGCGGGTTGGAGTCGAAAGAATCGGCGATCGCTGGGGGCGAGT
GGGAACCACTGGCGGAAACGTTGCAGGCTGGTGAGAACTACCTGTCAAGG
GATGGCGGTATCCGCCTC
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