mRNA_E_fasciculatus_S2_contig9696.17697.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: EsV-1-21 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K) HSP 1 Score: 317 bits (811), Expect = 1.150e-98 Identity = 187/317 (58.99%), Postives = 211/317 (66.56%), Query Frame = 1
Query: 604 IVHPYTIGRLRCGLKEEFRAAFNILLDGNHIDVYESPGEFLENLQCALVYAAEFGNGPVVNALSNKWVNLDGTAPIWNPGNRGNFVESATALHAAAFGGHIDMVNFLLENGVRIDPVDTVATTPLMWSVMENHLRVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGGIFGLSALHQAMTNRDNIEAMTDLLLRRGADETMVDRKGRTPMSFFPSG--MYCTAETKERVCKLLVNAPADRTWRRRGWLVMLRERERRKTEKEGCKVARMEKEGDIVLGGVASWLLLVTDEGVLRTVVAFL 1548
IV+P TIGRLR G +EEFRAAFN + DGN ++S G+FL Q AL+YAAE+GN PVV ALS K V+LDGTA + P + ATALHAAA GGH D+VN+LL+N VRIDP D TPLMWS M+NHL VS ASGG+FG SALH A+ NRDN EAM DLLLR GADET+VD +GRTP+ F SG TAETKERV KLLVNAPADRTWRRRGWLVML ERERRKT KEGCK+AR E+ DIV+GGVA+WL VTDEGVLRTVVAFL
Sbjct: 213 IVYPDTIGRLRFGTEEEFRAAFNKVFDGNIESGHKSHGDFL---QSALLYAAEYGNLPVVKALSTKGVDLDGTAEYY-PSHSDIVPGQATALHAAASGGHNDVVNYLLDNSVRIDPDDKNMMTPLMWSAMKNHLCVSATLLEAGANASAEDQMGESSLSSDSWSCSVDMALLLLRYGADVNASGGLFGSSALHNAIKNRDNTEAMVDLLLRWGADETVVDDRGRTPLDVFTSGTRFQRTAETKERVRKLLVNAPADRTWRRRGWLVMLWERERRKTVKEGCKLARTEE--DIVVGGVATWLFAVTDEGVLRTVVAFL 523
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: EsV-1-21 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 310 bits (793), Expect = 1.030e-96 Identity = 197/344 (57.27%), Postives = 221/344 (64.24%), Query Frame = 1
Query: 538 ALELAAKGGHLRVVNTLVLNGAIVHPYTIGRLRCGLKEEFRAAFNILLDGNHIDV----YESPGEFLENLQCALVYAAEFGNGPVVNALSNKWVNLDGTAPIWNPGNRGNFVESATALHAAAFGGHIDMVNFLLENGVRIDPVDTVATTPLMWSVMENHLRVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGG-IFGLSALHQAMTNRDNIEAMTDLLLRRGADETMVDRKGRTPMSFFPSGMYC--TAETKERVCKLLVNAPADRTWRRRGWLVMLRERERRKTEKEGCKVARMEKEGDIVLGGVASWLLLVTDEGVLRTVVAFL 1548
AL L+AKGGHLRVVNTLVL GA V T+G LRCG++E F AFN +LDGN D YES G FL Q AL+ AAE GN PVV ALS K V+LDGTA ++P + ATALHAAAFGGH D+VNFLLEN VRID VD TPL+ SV ENHL VS + +FG S LH A TNRDN EA+ DLLLR GADET+VD GRTPM+ + +AETK++V KLLVNAPADRTWRRRGWLVML ERERRKTEK+GCKVAR E EG IVLGG+A+WLL VTDEGVLRTVV FL
Sbjct: 128 ALLLSAKGGHLRVVNTLVLRGASVCCDTVGLLRCGVEEGFHEAFNNVLDGNLQDGLPDGYESRGHFL---QTALLKAAESGNLPVVKALSTKGVDLDGTAE-YHPSHSDIIPGQATALHAAAFGGHNDVVNFLLENSVRIDAVDGNMMTPLICSVSENHLCVSATLLEAGAAASAEDQTGTSSLSYAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNACTNRDNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTRHSAETKDKVRKLLVNAPADRTWRRRGWLVMLCERERRKTEKKGCKVARTE-EG-IVLGGMAAWLLAVTDEGVLRTVVGFL 465
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: EsV-1-21 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E2_ECTSI) HSP 1 Score: 202 bits (513), Expect = 1.880e-58 Identity = 107/183 (58.47%), Postives = 130/183 (71.04%), Query Frame = 1
Query: 460 CGQNEVVDVLVERGADLEPHH----YNQTGALELAAKGGHLRVVNTLVLNGAIVHPYTIGRLRCGLKEEFRAAFNILLDGNHIDVYESPGEFLENLQCALVYAAEFGNGPVVNALSNKWVNLDGTAPIWNPGNRGNFVESATALHAAAFGGHIDMVNFLLENGVRIDPVDTVATTPLMWSVME 996
CG N+VV +LV R D+E + AL+L+A+GGHLRVVNTLV+ GA+ P T GRLR ++E FRAAF+ L +GN YE PG FL QCAL+ AAE+G+ PVV ALS K VNLDGTA W+PGN G F E ATALHAAA+GGH D+VN+LLEN VRI+ VD +TPL +SVME
Sbjct: 2 CGHNKVVVILVLREVDIEARDGDIFFGSKTALQLSAEGGHLRVVNTLVIRGALAEPETFGRLRFSVEEGFRAAFDTLFEGNREGKYELPGGFL---QCALILAAEYGDLPVVEALSIKGVNLDGTAEFWDPGNNGWFCEPATALHAAAYGGHYDVVNYLLENRVRIETVDGELSTPLSYSVME 181
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG3_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 7.780e-17 Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query: 251 EDGLTEDVVKLLESSERKGTDDFQGWGQTALMLAAREGHHHVARALLDHGADINQEGEKC 430
EDG EDVV+LL S+E KGTDDFQG G+TALML AREGH V LL+HGA+IN+ GEKC
Sbjct: 10 EDGRAEDVVELLVSNEGKGTDDFQGGGKTALMLTAREGHKSVVCELLNHGAEINKNGEKC 69
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: EsV-1-8 (n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 4.340e-13 Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 1165 GLSALHQAMTNRDNIEAMTDLLLRRGADETMVDRKGRTPMSFFPSGMYCTAETKERVCKLLVNAPADRTWRRRGWLVMLRERERRKTEKEGCKVARMEKEGDIVLGGVA--SWLLLVTDEGVLRTVVAFL 1548
G + LH M + ++ DLLLR GADETM D +G+TP + ERV LLVNAP DR WRRRGWLVMLR E + +K G GGV ++L + ++ V R VVAFL
Sbjct: 345 GQTPLHHIMNRGSCVPSVVDLLLRWGADETMKDERGKTPADYLGRIRNLDPAVAERVRHLLVNAPKDRAWRRRGWLVMLRAHTL--AAGEPVDIPEPKKRGGG--GGVCPLKFVLSLNEDAVFREVVAFL 470
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 1.880e-11 Identity = 115/389 (29.56%), Postives = 154/389 (39.59%), Query Frame = 1
Query: 448 FAAGCGQNEVVDVLVERGADLEPHHYNQTGALELAAKGGHLRVVNTLVLNGAIVHPYTIGRLRCGLKEEFRAAFN------ILLDGNHIDVYESPGEFLENLQCALVYAAEFGNGPVVNALSNKWVNLDGTAPIWNPGNRGNFV-ESATALHAAAFGGHIDMVNFLL-ENGVRIDPVDTVATTPLMWSVMENH-------LRVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGGIFGLSALHQAMTNRDNIEAMTDLLLRRGADETMVDRKGRTPMSFFPSGMYCTAETKERVCKLLVNAPADRTWRRRGWLVMLRERERRKTEKEGCKVARMEKEGDIVLGGVASWLLL-------VTDEGVLRTVVAFL 1548
FAA G N +V L+ E + T ++ AA+ GH+ V+ TL+ GA T L G AA I L D +SP N + L+ A+ G+ PVV L N + D T + + ++ TALH A GGH+ +VN LL + G+ ID VDT TT L +V+ L V+ S FG + LH A + +A+ LLL+ GADE ++ G TP V +LL ADR WRRRGWLVMLR R + G AR K+ GG S+ L V +EGV R VV+FL
Sbjct: 60 FAASEGNNHMVRCLLRWKDKDEQDQFGYTPLMK-AAENGHMPVMETLLDQGADA---TFRHLDDGSTSIIAAALGGYNEIVIALLNKGADK-DSPAA---NGRTPLMEASRKGHLPVVKTLLNA--DADVTLAAHGLTDEDYCLGDNCTALHFATAGGHLGVVNALLSKGGLEIDAVDTDGTTALHLAVIMGRSLPIMETLLVAGADPDIRINTGGVQDCPLETACHSKDNIGTYHVCKTLIDHGADVNSRCPFGSTPLHHACDYSQS-DAVLRLLLQAGADENALNDDGDTP----------------GVRELL----ADRAWRRRGWLVMLRLRTLKAGGDGGAAGARSAKQRGGSGGGEESFNLSEAVEWLGVVEEGVFRNVVSFL 417
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 7.480e-10 Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 1165 GLSALHQA-MTNRDNIEAMTDLLLRRGADETMVDRKGRTPMSFFPS----GMYCTAETKERVCKLLVNAPADRTWRRRGWLVMLRER 1410
G + LH+A + R+ + A DLLLR GADET +++GRTP+ + +C+ + +R LLV AP DR WRRRGWLV+LR R
Sbjct: 342 GDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSR 428
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 4.970e-9 Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 1165 GLSALHQAMTNRDNIEAMTDLLLRRGADETMVDRKGRTPMSF-FPSGM------YCTAETKERVCKLLVNAPADRTWRRRGWLVMLR 1404
G ++LH A + + EA+ DLLLR GADET+VD +G TP S+ FP+G T +R+ KLL +AP DR+WRRRG+LVM R
Sbjct: 18 GATSLHMACYDVEP-EAV-DLLLRWGADETVVDDEGHTPYSYHFPAGADEAEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCR 102
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.410e-8 Identity = 96/361 (26.59%), Postives = 132/361 (36.57%), Query Frame = 1
Query: 451 AAGCGQNEVVDVLVERGADLEPHHYNQTG-ALELAAKGGHLRVVNTLVLNGAIVHPYTI-GR--LRCGLKEEFRAAFNILLDGN---HIDVYESPGEFLENLQCALVYAAEFGNGPVVNALSNKWVNLDGTAPIWNPGNRGNFVESATALHAAAFGGHIDMVNFLLENGVRIDPVDTVATTPLMWSVMENHLRVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGGIF-----GLSALHQAMTNRDN-IEAMTDLLLRRGADETMVDRKGRTPMSFFP---------------SGMYCTAE--------TKE--RVCKLLVNAPADRTWRRRGWLVMLRERERR 1419
A+ CG L+ GAD+ +L +A +G H +V+ L++ GA + T+ GR L + LL GN +D +S G L+ A+E G+ V AL ++ N + G TA+ A GH+ ++ ++ENG + DT T L +H R + G + GLSALH + ++ M DLLLR GA ET V++ G TP S C TKE R LL APADRTWRRR WLVMLR R R
Sbjct: 112 ASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLL-GNAMTDVDALDSRGV------SPLMVASEGGHCSTVEALLRAGADM-------NLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTAL------HHARGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAER 452
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Match: EsV-1-8 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 1.510e-8 Identity = 48/128 (37.50%), Postives = 64/128 (50.00%), Query Frame = 1
Query: 1165 GLSALHQAMTNR-DNIEAMTDLLLRRGADETMVDRKGRTPMSFFPSGMY--------CTAETKERVCKLLVNAPADRTWRRRGWLVMLRERERRKTEKEGCKVARMEKEGDIVLGGVASWLLLVTDEG 1521
G + LH+ R + +EA D+LLR GADET ++ G +P F G Y + +R LL APADR WRRRGWLVMLR R+ K ++ C+ + GD GG + EG
Sbjct: 18 GYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFL-GGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDS-KAQEGKCRSSGGYDHGD---GGEVGGSEMARSEG 140 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9696.17697.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9696.17697.1 >prot_E_fasciculatus_S2_contig9696.17697.1 ID=prot_E_fasciculatus_S2_contig9696.17697.1|Name=mRNA_E_fasciculatus_S2_contig9696.17697.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=214bp MVNFLLENGVRIDPVDTVATTPLMWSVMENHLRVSATLLEAGADVSKEDDback to top mRNA from alignment at E_fasciculatus_S2_contig9696:2006..3556+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9696.17697.1 ID=mRNA_E_fasciculatus_S2_contig9696.17697.1|Name=mRNA_E_fasciculatus_S2_contig9696.17697.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1551bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9696:2006..3556+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9696:2006..3556+ >mRNA_E_fasciculatus_S2_contig9696.17697.1 ID=mRNA_E_fasciculatus_S2_contig9696.17697.1|Name=mRNA_E_fasciculatus_S2_contig9696.17697.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=642bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9696:2006..3556+ (Ectocarpus fasciculatus EfasUO2)back to top |