mRNA_E_fasciculatus_S2_contig9693.17694.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9693.17694.1
Unique NamemRNA_E_fasciculatus_S2_contig9693.17694.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: UBX (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J6_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.720e-43
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 1
Query:    7 PN-QKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            PN  KVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYS+EDGDDALSVEEA LHPTGMLFVHDLDA
Sbjct:  220 PNGSKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSQEDGDDALSVEEAGLHPTGMLFVHDLDA 296          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: UBX (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL2_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.670e-40
Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 TKPNQKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            +K   K ++ FDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYS+EDGDDALSVEEA LHPTGMLFVHDLDA
Sbjct:  218 SKVVSKDEQEFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSQEDGDDALSVEEAGLHPTGMLFVHDLDA 295          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C630_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.470e-18
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    7 PN-QKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            PN  K+DR+F A GT+  +R F+ +HL DN IPI+ +S+STN+P+RT+     +D++++ +A LHP  +L+V DLDA
Sbjct:   48 PNGSKIDRKFLASGTIEAVRDFIDVHLGDNGIPIETYSLSTNYPKRTFE----NDSITLTDAGLHPQSVLYVQDLDA 120          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXF1_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 9.720e-17
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   16 KVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            KVDRRFDAD  +  +  F+ +H  DN+I I+N+S+STNFP+RT++E     A ++  A LHP  +LFV DLDA
Sbjct:   51 KVDRRFDADAPLRVVGDFIDVHFADNEIEIENYSVSTNFPKRTFAELG---AETLRAAGLHPQAVLFVQDLDA 120          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A330_TRICV)

HSP 1 Score: 82.4 bits (202), Expect = 1.290e-16
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   13 QKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            +++DRRF +   VG IR F+ +H  +N IPI+NFS+STN+PR+TY     DD ++++EA L P  +L VHDLDA
Sbjct:  412 KRLDRRFQSGDFVGAIRAFLVVHFHENGIPIENFSLSTNYPRKTYE----DDGITLQEAGLCPQAVLMVHDLDA 481          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: UBX (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3E2_FISSO)

HSP 1 Score: 77.8 bits (190), Expect = 5.120e-15
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   13 QKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            QK++RRF AD T+G +R F+ ++  +N+IPI+N  +STNFP++ Y     DDA+S++E  L P  +L V DLDA
Sbjct:  353 QKINRRFHADDTIGTVRSFLMVYFHENEIPIQNVRLSTNFPKQHYD----DDAVSLQEGGLVPQAVLMVQDLDA 422          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: UBX (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCI6_FISSO)

HSP 1 Score: 75.9 bits (185), Expect = 2.180e-14
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   13 QKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            QK++RRF AD T+G +R F+ ++  +N+IPI+N  +STNFP++ Y     DDA+ ++E  L P  +L V DLDA
Sbjct:  308 QKINRRFHADDTIGTVRSFLMVYFHENEIPIQNVRLSTNFPKQHYD----DDAVCLQEGGLVPQAVLMVQDLDA 377          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: UBX (domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T821_THAOC)

HSP 1 Score: 72.4 bits (176), Expect = 4.360e-13
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 TKPN-QKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            T PN +KVDRRF +  T+  IR F+ ++  +  I IKNF +STN+P++T+SE+D    L++EE+ L P  ++ V DLD+
Sbjct:  365 TLPNGKKVDRRFHSTSTIEVIRAFLVIYFNEQGIEIKNFGLSTNYPKKTFSEDDI--KLTLEESGLAPQSVIMVQDLDS 441          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: Hypothetical (protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZS27_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.360e-13
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 TKPNQK-VDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            T PN K +DRRF A  TV  IR F+ +   + +IPI+NFS+STNFP++T+  +DG  +L+++EA L P  ++ + DLDA
Sbjct:  367 TLPNGKRIDRRFYASDTVDVIRAFLIVRFHEQEIPIENFSLSTNFPKKTF--DDG--SLTLKEAGLCPQAVMMIQDLDA 441          
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Match: UBX (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C524_THAPS)

HSP 1 Score: 71.6 bits (174), Expect = 7.170e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 TKPN-QKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYSEEDGDDALSVEEAELHPTGMLFVHDLDA 234
            T PN +KVDRRF +  T+  ++ F+ +H  + ++ +KNF +STNFP++T+ EED  D  ++EE  L P  ++ V DLDA
Sbjct:  296 TLPNGKKVDRRFQSLDTMEVVKAFLIVHFNEQEVEMKNFGLSTNFPKKTFGEED--DNKTLEELGLAPQAVVMVQDLDA 372          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9693.17694.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
UBX2.720e-4394.81domain-containing protein n=1 Tax=Ectocarpus silic... [more]
UBX2.670e-4087.18domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical8.470e-1846.75protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical9.720e-1750.68protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.290e-1650.00protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
UBX5.120e-1547.30domain-containing protein n=1 Tax=Fistulifera sola... [more]
UBX2.180e-1445.95domain-containing protein n=1 Tax=Fistulifera sola... [more]
UBX4.360e-1344.30domain-containing protein n=2 Tax=Thalassiosira oc... [more]
Hypothetical4.360e-1346.84protein n=4 Tax=Ditylum brightwellii TaxID=49249 R... [more]
UBX7.170e-1343.04domain-containing protein n=1 Tax=Thalassiosira ps... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9693contigE_fasciculatus_S2_contig9693:5427..5663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score149.4
Seed ortholog evalue6.8e-34
Seed eggNOG ortholog2880.D7G9J6
Model size237
KEGG koko:K18726
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1363@1,KOG1363@2759
Cds size237
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842614.2944489-CDS-E_fasciculatus_S2_contig9693:5426..56631696842614.2944489-CDS-E_fasciculatus_S2_contig9693:5426..5663Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9693 5427..5663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9693.17694.1prot_E_fasciculatus_S2_contig9693.17694.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9693 5427..5663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9693.17694.1

>prot_E_fasciculatus_S2_contig9693.17694.1 ID=prot_E_fasciculatus_S2_contig9693.17694.1|Name=mRNA_E_fasciculatus_S2_contig9693.17694.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=79bp
TKPNQKVDRRFDADGTVGEIRGFVTLHLEDNDIPIKNFSMSTNFPRRTYS
EEDGDDALSVEEAELHPTGMLFVHDLDA*
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mRNA from alignment at E_fasciculatus_S2_contig9693:5427..5663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9693.17694.1 ID=mRNA_E_fasciculatus_S2_contig9693.17694.1|Name=mRNA_E_fasciculatus_S2_contig9693.17694.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=237bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9693:5427..5663- (Ectocarpus fasciculatus EfasUO2)
ACCAAACCAAACCAAAAGGTGGACCGTAGGTTCGATGCAGACGGCACCGT GGGAGAGATCCGAGGGTTCGTCACCCTCCACCTCGAGGACAACGACATCC CCATCAAGAACTTCAGCATGAGCACCAACTTCCCCCGAAGGACGTACAGC GAGGAGGACGGCGACGACGCCCTCTCCGTCGAGGAGGCGGAGCTGCACCC CACCGGCATGCTCTTCGTCCACGACCTTGACGCCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9693:5427..5663-

>mRNA_E_fasciculatus_S2_contig9693.17694.1 ID=mRNA_E_fasciculatus_S2_contig9693.17694.1|Name=mRNA_E_fasciculatus_S2_contig9693.17694.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=237bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9693:5427..5663- (Ectocarpus fasciculatus EfasUO2)
ACCAAACCAAACCAAAAGGTGGACCGTAGGTTCGATGCAGACGGCACCGT
GGGAGAGATCCGAGGGTTCGTCACCCTCCACCTCGAGGACAACGACATCC
CCATCAAGAACTTCAGCATGAGCACCAACTTCCCCCGAAGGACGTACAGC
GAGGAGGACGGCGACGACGCCCTCTCCGTCGAGGAGGCGGAGCTGCACCC
CACCGGCATGCTCTTCGTCCACGACCTTGACGCCTAG
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