mRNA_E_fasciculatus_S2_contig969.17689.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig969.17689.1
Unique NamemRNA_E_fasciculatus_S2_contig969.17689.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig969.17689.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB4_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 4.620e-111
Identity = 159/180 (88.33%), Postives = 167/180 (92.78%), Query Frame = 1 
Query:    1 MAYGCDLTRVFTYEGSETDIYINYVTLVLTLITLILCTRRAGERASRYPRYAAWFWVPFTSVLFAMQVFADCSTNNVGISAVWSAYAGFVFLAWWRIQHVRRPEDQGCVAEVTAVSTLTYATPASLAVWTGVCMYYAIVEEAITTVAHLVAFGVGAGALLIFEALHKISSQDSYEMMDDK 540
            MAYGCDLTRVFTYEGSETDIYINYVTLVLTLITLILCTR+AGERASRYPRYAAWFWVPFTSVLFAMQ+FADCSTNNVGISAVWSAYAGFVFLAWWRIQH+R        AE  AVS L YATP SLA+WTGVC+YYAIVEEA+TTVAHLVAFGVGAGALL+FEALHKISSQDSYEMM+DK
Sbjct:    1 MAYGCDLTRVFTYEGSETDIYINYVTLVLTLITLILCTRKAGERASRYPRYAAWFWVPFTSVLFAMQLFADCSTNNVGISAVWSAYAGFVFLAWWRIQHIR--------AENAAVSALAYATPVSLAMWTGVCVYYAIVEEAMTTVAHLVAFGVGAGALLLFEALHKISSQDSYEMMEDK 172
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BLAST of mRNA_E_fasciculatus_S2_contig969.17689.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC08_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.100e-28
Identity = 60/151 (39.74%), Postives = 86/151 (56.95%), Query Frame = 1 
Query:   13 CDLTRVFTYEGSETDIYINYVTLVLTLITLILCTRRAGERASRYPRYAAWFWVPFTSVLFAMQVFADCSTNNVGISAVWSAYAGFVFLAWWRIQHVRRPEDQGCVAEVTAVSTLTYATPASLAVWTGVCMYYAIVEEAITTVAHLVAFGVG 465
            C ++   TY GS+ D+ +NY  LV+    + +  R A +   RY  YA   W+P T+ LF +Q+ ADC  +  GISAVW+A AGF+ + W  +  + RP                 AT A+L+   G+ +YYA+VE+AIT+VAH VAFGVG
Sbjct:    3 CKISSALTYSGSQLDVGLNYFGLVVCTTAVAVVLRPASKHCRRYRNYAQSSWIPLTAGLFVLQIGADCGADAEGISAVWAAQAGFLAVGWRLMPAMYRPRPA------------RLATAAALSTALGLTVYYAMVEDAITSVAHAVAFGVG 141
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig969.17689.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.960e-20
Identity = 67/179 (37.43%), Postives = 85/179 (47.49%), Query Frame = 1 
Query:   13 CDLTRVFTYE-GSETDIYINYVTLVLTLITLILCTRRAGERASRYPRYAAWFWVPFTSVLFAMQVFADCSTNN-------VGISAVWSAYAGFVFLAWWRIQHVRRPEDQGCVAEVTAVSTLTYATPASLAVWTGVCMYYAIVEEAITTVAHLVAFGVGAGALLIFEALHKISSQDSYE 525
            CD+     Y  GS  DIY NY  LVLT   L L  R AG+ A+R PR A   W+P T++L A+QVFADC+ +         GISA+W+A+AG++  A      +  P   G  A                        YYA+ E  +TTVAH+VA GVGA  LL     H       YE
Sbjct:    3 CDVPAALVYSRGSRVDIYFNYGALVLTTAALQLSLRGAGDVAARAPRCARAAWLPVTALLLALQVFADCAADEQASRRAMCGISAIWAAHAGWLATALV----ILHPLFDGAPAARAXXXXXXXXXX-------XXXXYYAVAEPPLTTVAHIVAAGVGA--LLAVAHKHIFGVAQPYE 168
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig969.17689.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized4.620e-11188.33protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB4... [more]
Uncharacterized2.100e-2839.74protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Uncharacterized5.960e-2037.43protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig969contigE_fasciculatus_S2_contig969:12620..14296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size543
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002520.1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842613.859606-CDS-E_fasciculatus_S2_contig969:12619..129611696842613.859606-CDS-E_fasciculatus_S2_contig969:12619..12961Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig969 12620..12961 -
1696842613.869774-CDS-E_fasciculatus_S2_contig969:13318..134491696842613.869774-CDS-E_fasciculatus_S2_contig969:13318..13449Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig969 13319..13449 -
1696842613.8797383-CDS-E_fasciculatus_S2_contig969:14226..142961696842613.8797383-CDS-E_fasciculatus_S2_contig969:14226..14296Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig969 14227..14296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig969.17689.1prot_E_fasciculatus_S2_contig969.17689.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig969 12620..14296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig969.17689.1

>prot_E_fasciculatus_S2_contig969.17689.1 ID=prot_E_fasciculatus_S2_contig969.17689.1|Name=mRNA_E_fasciculatus_S2_contig969.17689.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=181bp
MAYGCDLTRVFTYEGSETDIYINYVTLVLTLITLILCTRRAGERASRYPR
YAAWFWVPFTSVLFAMQVFADCSTNNVGISAVWSAYAGFVFLAWWRIQHV
RRPEDQGCVAEVTAVSTLTYATPASLAVWTGVCMYYAIVEEAITTVAHLV
AFGVGAGALLIFEALHKISSQDSYEMMDDK*
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mRNA from alignment at E_fasciculatus_S2_contig969:12620..14296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig969.17689.1 ID=mRNA_E_fasciculatus_S2_contig969.17689.1|Name=mRNA_E_fasciculatus_S2_contig969.17689.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1677bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig969:12620..14296- (Ectocarpus fasciculatus EfasUO2)
ATGGCGTACGGGTGCGACTTGACACGAGTGTTTACTTACGAAGGGAGCGA
AACGGATATCTACATCAACTGTGAGCTTTGCGTGATCTTGCATAATACAT
TGTCCCGCAATCCACAACAATGAAGGGTAATGCTCCAACTGGTTACCGTG
GGCGACACAAGATACATACCACATTCCCTGCACCGATTTTCTACGCTCCA
TTATTCCGCGACGATCAGGATGCATGAGCGAAACAGTACCTTTTCGGAAC
GCTCTCGACGAGACAGCTTCAACGCCGCCGTTTCGGCGCTGCCAGTCATT
CTGTTGTGGAGAAATCGAGCTTTGGAAACAGCTTCAGGGGGGTGTGGTAT
GTTGTGTCACCTACGGTAGTTGTGCTGATGTGCCCGTGGAATCTGTCTCT
ACCGGCAGCTCTTTTCCGTGTGTCGCTGACCGTATCTCAACTTGATGTTT
TCCCTTTCAATGCGCTCAACAAAAGTGATCACTCGTGAACCTACCTCCGA
CGCGACGATCCCGCCCAGTGGTGGCGGGCTGCTGTGCTTTCGCTGCGAGA
CAACACCGGCAGCAGTTCCATACAAAAGACATCACGCCCCGGTGGCAACA
ACTGGGCTAAAAATCGAAATATGAACGGGCGGAATTTCTACTGCCTGCGG
CATCTTCGGTGACGTTATGGCTTGATCTGAGAGTATTTTACACGTCGGAC
TTACGTCGAGCCGCAGACATCACGGGTGGTGGGGTTGATGGTTGTACGTG
GTGGGGGGATGGTATCTACGGCACAGTTAAAAATCGACACATCCATCTTA
CACACTAGCCAAAACCCCTTTTCTTGCCCCATTCTTTAACATTGCAGACG
TCACGTTGGTGCTAACGCTCATCACTCTAATACTGTGCACGCGGAGAGCG
GGGGAGCGAGCTTCAAGGTATCCCCGCTACGCGGCATGGTTCTGGGTGCC
GTTCACCTCGGTCCTGTTCGCCATGCAGGTCAGGACACGCGTTACGCAGG
AGTACATTTTTCTGTTCGGTGTCTCGCCGATGTAGACTGATGTAGACGGT
GCCACACGGCTCGACCGACTACTAGTTAGCGGTCCGCGTTTAGGACGGTA
GAAAAAAACGTTGTTGTGTCGTTGTCGTTGCCTCGCCGTGTCTTATCTAC
GTGTATGTTCGACCTCGGCACGTAGTAGCGGCACGACGATCAGCAGTAGA
CAGCACACAGCAAGTGCTCGAAGAGAATAGCTAAACGACCGAATGCTCAC
CTTTCCATCGCTTTCATCATGGAGAGACCACACCGTTGTCTGGTAGAGTT
ATAATACTGTCCCTCATCCGCCGTCCGACCGACAGGTCTTCGCCGACTGT
AGCACGAACAACGTCGGGATTAGCGCCGTGTGGAGCGCGTACGCGGGGTT
CGTCTTTCTAGCCTGGTGGCGCATCCAGCACGTCCGCCGTCCGGAGGACC
AAGGGTGTGTCGCAGAGGTTACAGCGGTGTCAACATTGACGTATGCCACC
CCAGCCTCGCTGGCGGTGTGGACCGGCGTCTGCATGTACTACGCTATCGT
CGAGGAGGCCATAACCACCGTGGCGCATCTGGTAGCGTTCGGTGTGGGCG
CTGGAGCGCTCTTGATATTTGAGGCCCTCCATAAAATCTCATCGCAAGAC
TCGTACGAGATGATGGACGACAAATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig969:12620..14296-

>mRNA_E_fasciculatus_S2_contig969.17689.1 ID=mRNA_E_fasciculatus_S2_contig969.17689.1|Name=mRNA_E_fasciculatus_S2_contig969.17689.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=543bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig969:12620..14296- (Ectocarpus fasciculatus EfasUO2)
ATGGCGTACGGGTGCGACTTGACACGAGTGTTTACTTACGAAGGGAGCGA
AACGGATATCTACATCAACTACGTCACGTTGGTGCTAACGCTCATCACTC
TAATACTGTGCACGCGGAGAGCGGGGGAGCGAGCTTCAAGGTATCCCCGC
TACGCGGCATGGTTCTGGGTGCCGTTCACCTCGGTCCTGTTCGCCATGCA
GGTCTTCGCCGACTGTAGCACGAACAACGTCGGGATTAGCGCCGTGTGGA
GCGCGTACGCGGGGTTCGTCTTTCTAGCCTGGTGGCGCATCCAGCACGTC
CGCCGTCCGGAGGACCAAGGGTGTGTCGCAGAGGTTACAGCGGTGTCAAC
ATTGACGTATGCCACCCCAGCCTCGCTGGCGGTGTGGACCGGCGTCTGCA
TGTACTACGCTATCGTCGAGGAGGCCATAACCACCGTGGCGCATCTGGTA
GCGTTCGGTGTGGGCGCTGGAGCGCTCTTGATATTTGAGGCCCTCCATAA
AATCTCATCGCAAGACTCGTACGAGATGATGGACGACAAATGA
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