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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9671.17678.1 vs.
Match: Clathrin (light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ2_ECTSI) HSP 1 Score: 407 bits (1045), Expect = 8.110e-135 Identity = 255/280 (91.07%), Postives = 257/280 (91.79%), Query Frame = 3
Query: 162 MSGEDPFFPDATGGSSGEAADPAAAASAGFVDAGSPPPVAYGMQEPAAYDLGGAAGGGGDQFGVVGDGEQFGXXXXXXXXXXXXXXXXXXXXXXXDQFEGMPLQASSTPYQPKPTDPYSLEETAGVMEAAQIQFDAGVKERAEKEAAKAAEVKRLAEEELDGFYDERTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAGAXXXXXXXXSRKGSATAQSGMEEEDVFRATEKMRSLIIQMKADTAEGNAGGDTG 1001
MSGEDPFFPDATGGSSGEAADP AAASAGFVDAGSPPPVAYGMQE AAYDLGG GGGGDQFGVVGDGEQFG XXXX XXXXXXXXXX D FEG+PLQASSTPYQPKPTDP SLEE AGVME AQ QFDA VKERAEKEAAKAAEVKRLAEEELDGFYD RTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAG XXXXXXXX RKGSATAQSGMEEE+VFRATEKMRSLIIQMKADTAE NAGGDTG
Sbjct: 1 MSGEDPFFPDATGGSSGEAADPGAAASAGFVDAGSPPPVAYGMQETAAYDLGG--GGGGDQFGVVGDGEQFGGGXXXXEGLXXXXXXXXXXG---DHFEGVPLQASSTPYQPKPTDPCSLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAGXXXXXXXXXXRKGSATAQSGMEEEEVFRATEKMRSLIIQMKADTAESNAGGDTG 275
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 62.0 |
| Seed ortholog evalue | 5.1e-07 |
| Seed eggNOG ortholog | 112098.XP_008607785.1 |
| Model size | 2116 |
| KEGG ko | ko:K18272 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| EggNOG free text desc. | post-chaperonin tubulin folding pathway |
| EggNOG OGs | KOG2512@1,KOG2512@2759 |
| Ec32 ortholog description | Clathrin light chain |
| Ec32 ortholog | Ec-01_005240.1 |
| Cds size | 843 |
| COG Functional cat. | Q |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04147 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842612.8175743-UTR-E_fasciculatus_S2_contig9671:137..205 | 1696842612.8175743-UTR-E_fasciculatus_S2_contig9671:137..205 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9671 138..205 + |
| 1696842612.8309484-UTR-E_fasciculatus_S2_contig9671:1240..1333 | 1696842612.8309484-UTR-E_fasciculatus_S2_contig9671:1240..1333 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9671 1241..1333 + |
| 1696842612.8970914-UTR-E_fasciculatus_S2_contig9671:4725..5837 | 1696842612.8970914-UTR-E_fasciculatus_S2_contig9671:4725..5837 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9671 4726..5837 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842612.841753-CDS-E_fasciculatus_S2_contig9671:1333..1346 | 1696842612.841753-CDS-E_fasciculatus_S2_contig9671:1333..1346 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9671 1334..1346 + |
| 1696842612.8534489-CDS-E_fasciculatus_S2_contig9671:1766..2065 | 1696842612.8534489-CDS-E_fasciculatus_S2_contig9671:1766..2065 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9671 1767..2065 + |
| 1696842612.8636944-CDS-E_fasciculatus_S2_contig9671:3215..3413 | 1696842612.8636944-CDS-E_fasciculatus_S2_contig9671:3215..3413 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9671 3216..3413 + |
| 1696842612.872966-CDS-E_fasciculatus_S2_contig9671:3664..3949 | 1696842612.872966-CDS-E_fasciculatus_S2_contig9671:3664..3949 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9671 3665..3949 + |
| 1696842612.8840592-CDS-E_fasciculatus_S2_contig9671:4677..4725 | 1696842612.8840592-CDS-E_fasciculatus_S2_contig9671:4677..4725 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9671 4678..4725 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9671.17678.1 >prot_E_fasciculatus_S2_contig9671.17678.1 ID=prot_E_fasciculatus_S2_contig9671.17678.1|Name=mRNA_E_fasciculatus_S2_contig9671.17678.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=281bp
MSGEDPFFPDATGGSSGEAADPAAAASAGFVDAGSPPPVAYGMQEPAAYD
LGGAAGGGGDQFGVVGDGEQFGGDGEQFGGGGGGGEGGGLGGGGGDQFEG
MPLQASSTPYQPKPTDPYSLEETAGVMEAAQIQFDAGVKERAEKEAAKAA
EVKRLAEEELDGFYDERTDEVARRQARSREQEETFLKGVSASIEESTSNP
WARICDLVDLKKPVISAKSSFSAGAGASGGGGSGGSRKGSATAQSGMEEE
DVFRATEKMRSLIIQMKADTAEGNAGGDTG* back to topmRNA from alignment at E_fasciculatus_S2_contig9671:138..5837+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9671.17678.1 ID=mRNA_E_fasciculatus_S2_contig9671.17678.1|Name=mRNA_E_fasciculatus_S2_contig9671.17678.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5700bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9671:138..5837+ (Ectocarpus fasciculatus EfasUO2)
AGTGACAAAGGGCAAGAACAGGGAAGGCAAGGAGAGCGGCACGTGTTTGG
TTCCCAGGCCATAACAAGGTGAGCTGCGACACGCTGGTGATCAACACAGT
GATGCTTACAGCAGACTTGATTGGTCTAAAGTTTGCTGTGCCTGTTCCCC
AAAACGAGCGATGCTACTCCCCACAAGACGCGGAGAAGAGAAGGTCTAAG
AACACAAGAACACAGCAGACAGACGCCCTATTTTATAGACACACCCGGAG
GGACTCTCTTCTCCTGTCTTCCAGCAACAACCCTGCAGTGCATCGAGTTT
CTTGTCGTTGTTTCCCGGTGAAAAAACCGCTGGCTCCTGTGTTGAAAGAT
CCCCACCCTTGCCCACCGAACAAGAGAGAGCAGCTCTCGGCATTGTATCC
TCCCTGAAGTCGCCGTACGGGCACAAGCGCCCGCAGCGGTGTCAACAACA
CTCAACCCCGATACACTACATACAGCATGCTCCGGTGGCACGTGCCAACA
CATTTTGCCCACAGAGAACAGGAAACGTCTGGAAGTGAATCTCCCGTACA
AGTAGTAGTCATTCCCGGTTGTCGCGCACACGCGAGGAAAAACAACACGC
GCGCGGGTAAAGGCACCCGCCACACGCGCAAGACTCTGGACGCAACTGGA
CGGTATCTACTGGTGACAACTATTGTACAGCACACAGCACAGCTGGTCGA
CTCGTGTTAACGGTACAGACGCTTTTTGGGCGCAGATACAGCAGTTGGGA
AGATATCCTGCGATTCCTCTGTTTGCAAAAAGTAAGCCTCGGGCAGTTCT
AAGCTCTTTACCCGAGAGGTTCGGTCATGAAATTTGCCGCGGTCTATCGT
GGTTTTCCCGCGTTGCACACGCGCACCAGCGTTGCGGACTTTCATTGCGG
TTCGCTTTTCGTTCCAAAAGGCTGCAATGCACAACAACTGCTGCTGTACC
TGCTCCATTCCTTTGTTTGTTGTGCATATGCATGCAAGTTTTTTGCTGCT
TTTTTGTTCCGTTTGTTCGCTTACGTGTGCTCGCTTCCAGTGCCCGCAGA
GACGGCTGTTGGTAACCTGTAACCTGCGTGCGACGTTTCTCTACTTGAGC
CAGGGGGGCACCGCCGACATCCACGGCGCCGTAAATCGTGAGGCGTGTGG
AGGGCAGGCTTTCGGAGACAGGAGAGGCAGGGCTTCTTTGTTTGCCATGT
CGGGGGAAGGTGCGCGCAACCATGGCCGCTCTTATCGGCGTAACTTTTGA
AGTGTTCAGGATTGGACCTCTCAAGCCATTTCAGCACTAGTGGCGTTGAC
ACGCAGCCGGAACCTACAGCAGCACTGCTGTGTATTTTATCCTCTCGACG
TGTCTTGTCTGTCGCTGTAATCAATTCCTAATCTCCGGCCCTAGTGAAAC
ACGTTTTATTGTACAGTAAAAGGGGGGCGATCCCACGGATCCAGCAGTGT
TCAATTAGATTGCCATGGGCGCGTTGAAACCGGGCTTTCGCTGGAAAAAG
CACCTCTCGACGATAACCGACTGCCGCACGCGGTGCAACCAAGTACAACC
TCACTGCCAACTGCTGTCTATCCACCTTACGCGTTGCTGATCTATCGCGT
GCGGATGCATTGTCTATATGCATACGCAGACCCGTTTTTCCCGGATGCCA
CCGGGGGCAGCAGCGGCGAGGCCGCAGACCCCGCGGCGGCAGCGTCTGCC
GGTTTTGTTGACGCGGGATCACCGCCGCCGGTAGCGTACGGCATGCAGGA
ACCCGCAGCGTACGACCTCGGTGGGGCCGCCGGCGGCGGCGGGGACCAGT
TTGGAGTAGTCGGTGACGGCGAGCAATTCGGAGGTGACGGCGAGCAATTC
GGAGGTGGCGGCGGAGGAGGAGAAGGAGGAGGACTCGGAGGAGGCGGGGG
CGACCAGTTCGAGGGGATGCCGCTGCAGGTGGGTGTATGCATGCGGACGG
GGACAAGGGTCGAGGAGTGCCCGCTGCTGCTGTGTGAGCGTTGCGGTAGT
GACTACGATACGGGCTGTGTGAGCGTTGCGGAAGTGACTACGGTACGCCG
TGGTATGCATGGGAGCGAACGAGACATGAAAACGATGTTACCCCGAGGTT
GTGGTGGTACGCAACGATTCGCGTCCATGGTTGGAGGCGACGTCCGTGGC
GTCGGGCTGCGAGAAGACCGCGGAAAAAAGAAAGAGTGGAGACATGTAGA
GGGGGGAGAATTGGAGGCGGAAAGGGATCGGCGGAGACAACGTCACTCTG
TACAGCGTACTCTGCTCAAGATTGGCAGAGGCGTTATTCGCCGAGCGCGA
TGTACAATGACGCCCCGGAGCTAACTCTAGCAAGGAGGCGGGGGGTTCGG
GTCATCGAAGAAAAGAGTGCCCCGAGACAAACAGAGTCTCCGGGGGGATG
TTAGAAAATGTGTACCCTTACACATCTCCTACTGATCTCCATCCTTTCCT
CTCCTACCTCAATCGCGATGTTGGGCCGAGCCAACCTAGCCAGCATGTAC
AAGCAGCAATTTCTCAGCGAACGCATGAAACAGCAGTCGGGGAAGCTTGT
GCGCTCCGATCGAGAGGGCCGCACGGGTAGTTTTTTTCTGTTGAGACTGA
CGTCAGCGATGATTGATAACATAACATCTTTGATGGTTTGATCCTCACGT
TGTTTTGATGCCCCACCATTTTTTTGTATCAGTCTTAGACCACGCGCTGT
GGATCCTTGAGTTCGATAGCTCTCCTGACGCCACGCACAACATCAACATC
GTAGACCCTGCTAAACGCGGGGTGGTTCAAAGTGCCGTCCGGTGCCTTGC
AGCATTCATCTGCAACATAAAAACGAAAGCACGCCCACCCGGCGCCAACT
CTGATAGCAGGGCGGGGGGAAGGACAGGACCATGTCACGCCCAAATATAT
TAGCCCTGAGACCAACTCAAAACGTGTCTGTCACGCCGCGAGCCATATTA
TGGTGAGTGAGGCTACTCTCCGCCCCCCAACTCTAGGCTGAGCACGGACG
GTGTTTTGGGGTTGGCTAGAAAACTCAGGCAACTCGCGACCTCGCATGCC
CCGCGGTCTCTCTCTCTCTCTCTCTTAGGCGTCGTCGACGCCGTACCAGC
CAAAACCTACGGACCCCTACAGCCTCGAGGAGACCGCCGGAGTAATGGAG
GCGGCGCAGATTCAGTTTGACGCCGGTGTGAAGGAGAGGGCCGAAAAGGA
GGCCGCCAAGGCGGCCGAGGTGAAACGCCTGGCGGAGGAGGAGCTCGACG
GCTTTTACGACGAGCGCACGGACGAGGTGATGATGCTAGTGCGGGTACAT
GGATGGGGGGTGAAAGGAGCTCGCCTGGTGTGTCATTCGTCCCCTTTTTC
TTTCGTCTCTCACGTGTGTTGTAGGACGTCTGCCGCTGCTGATCCCTGCC
GCGAAAACTGCTGTGACCGAGGACAATATGAACCCGCTCACGACTGAATC
GAAGCGCCGCGCCCAACTTGACGAGTGATACAAATGCTTGCGCTCTCGTG
GACCTCTTCCCGTGCTCTACCTCGAAGGTTGCGCGGAGGCAGGCCCGCAG
CCGCGAACAGGAGGAGACGTTCCTCAAGGGGGTGTCCGCCTCGATCGAGG
AGTCCACTTCCAACCCTTGGGCCAGGATATGCGACCTCGTAGATTTGAAG
AAGCCGGTCATATCTGCGAAATCCTCTTTCTCTGCTGGCGCTGGCGCTTC
CGGAGGCGGAGGCAGCGGTGGCAGCCGCAAGGGCTCTGCCACGGCGCAGA
GTGGGATGGAGGAGGAGGACGTTTTCAGGGCAACCGAAAAGATGCGATCG
CTCATCATTCAGGTGGGGTGGCGTGTTAAGATGGATGGGTGTAGGAAATA
ACAACAGTTTCGGTCGTCGTCGTCGCTGTTGTTACTGTCGTCGCCGATTT
GTCCGATTTTTGGAGGAGACAGTTCCGTACGGTATCGCGTGGTCGCGTCT
CGCGCTCTAGACGGGTTTCGTCCCCCCAGGTTGCCCTTTTTGATCTAATC
TCTTCGGCTGTCGTTACGATACCGCAACCGTAGGGTGGGAAAGTCGTGTT
CGCGGTAGTGCGCGGGGTGTGTGTGGTGTACTGTACTCAAGCTAGCAACC
CCTTTCGGTTTCGGCGCTGCTTGGTAGCTGGCGGTATGCACACTCACACC
CCGCTCGCCAGAGAGGGTAGTCGAAACGCTTGAGAAACGCGTGCTGGAGG
GTCCCCCATGCCATCTTGTGGTAGCATTTTTTCGGAGGTTCGTTTACCTT
GTGCACTGGGACGTCCGCCACTGAAAACTTCTTTTGGCTTACAAGTGGTT
TCTGGTGTTTTGTGCGTAGTATCCCGACGTTACGTCGTGTTGTCCTCAGC
TAATGCAGTTGCCACCCCATGTTAGTATGGTATGACCCTGTTTTCTACCC
GGGGTATCGTATCCATACGCAGTAGTTTCAGTGCTCACTCGGGAAGCCCA
TTGATCCTAGAATGTAAGGTGTGTTGCTCACGCGGGGGTGCCTCCGTACC
CACACCCCTCCCCTCTCTCTCCCTGTTTCACCTTGGCCAGATGAAAGCGG
ACACAGCCGAGGGTAACGCGGGCGGCGACACTGGATAAAGAGGAGTGTGA
CAAGGAAAATAGAAACAATAAAAAACAGCATTAGCCCGGGTTTGTAAGCA
CCGAGGCTTGCCGCCCCGAAGGCTGTTGTGTTTAGCGTGCGCCGCCCAGG
TGGGGATGCGGCAACGTTCGGACGAAGATGAACAACAGCAGTAGTATACT
CCCATATCTATTTTTTGTTGTGATGGTTTTGCTATGTGTTGTGAATTTGC
CTTGGTAGGTCTGCGCTGGTTGCGGGCCCGCCCAGCCTTTCTGTTTGGTT
TCGCGAGTTCCTTTTTGTGGGAATAAATGCGGTAGACCTGCGCCTGTATG
CAGAAGGGTGGTGAGATTGCGTGTGGAGGGGAGAAAAAGTGCCCCAGTAA
CCCCCTGTCATTCTTGTGTTGGGTTGCTGCCGTGCTTTTCGTTTCCAAAG
GCTCGACGAAGCTCGTCCGATCATGCTGATCATGCGCTGGGGTCATGCTT
GTACAGCGTGGAGGGTGTAGCTCAGGTGACACTCGAAGCTAAGCACGACC
ATCCACGGCGAGAGCATAGCGCGATACAAGCGTCATGCAATTAAAGCTGG
TACATAGTAAGACGAGGTACCGCGGCGGGGTGGCATTTTTTTTCCTGTAT
CTGAGCCGGTTGGCTAGTCTGTGTCGTGCCGCACAACACATCGTGTCTGC
TGTCTTCCTGTTGATTAACATATGGCATCGCCACGTCGTGGCGGATTTTT
CACAAAAACACATGCACAAAAACTTATCCGAACCCGACGATTGCTGTGGG
ATAGTGAGATGCCGAAGTCGCCAGAGCCTTGACAACTGCGCGGTCAATAC
GCGTCCGATCCGGAAAGAAAACAAATCACGTGCTACACGTAAAAACGCCG
GTACCGACAAGTCAGAGGAAGGGGGGGTAAACTACATGTAAACAAATATT
CTTCTGGTTGCTGTGATCAAAGAATTGAAATAATGACAAGATAGGACTCA
CAGCCTTTTGGGAGCCGATGCATTGTTTGTTTTTTAGTGTGTTTTCGTTT
CGTCCCATCAGAAGGGAAGCTTGCAACAGGCCCTTGCCCCCTCGTCTCTC
ACTGGCAGTGTGCTGTTTTGGGGACCGCGCGACCTCTCTGCCTCTCCTCC
back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9671:138..5837+ >mRNA_E_fasciculatus_S2_contig9671.17678.1 ID=mRNA_E_fasciculatus_S2_contig9671.17678.1|Name=mRNA_E_fasciculatus_S2_contig9671.17678.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=843bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9671:138..5837+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGGGGAAGACCCGTTTTTCCCGGATGCCACCGGGGGCAGCAGCGG
CGAGGCCGCAGACCCCGCGGCGGCAGCGTCTGCCGGTTTTGTTGACGCGG
GATCACCGCCGCCGGTAGCGTACGGCATGCAGGAACCCGCAGCGTACGAC
CTCGGTGGGGCCGCCGGCGGCGGCGGGGACCAGTTTGGAGTAGTCGGTGA
CGGCGAGCAATTCGGAGGTGACGGCGAGCAATTCGGAGGTGGCGGCGGAG
GAGGAGAAGGAGGAGGACTCGGAGGAGGCGGGGGCGACCAGTTCGAGGGG
ATGCCGCTGCAGGCGTCGTCGACGCCGTACCAGCCAAAACCTACGGACCC
CTACAGCCTCGAGGAGACCGCCGGAGTAATGGAGGCGGCGCAGATTCAGT
TTGACGCCGGTGTGAAGGAGAGGGCCGAAAAGGAGGCCGCCAAGGCGGCC
GAGGTGAAACGCCTGGCGGAGGAGGAGCTCGACGGCTTTTACGACGAGCG
CACGGACGAGGTTGCGCGGAGGCAGGCCCGCAGCCGCGAACAGGAGGAGA
CGTTCCTCAAGGGGGTGTCCGCCTCGATCGAGGAGTCCACTTCCAACCCT
TGGGCCAGGATATGCGACCTCGTAGATTTGAAGAAGCCGGTCATATCTGC
GAAATCCTCTTTCTCTGCTGGCGCTGGCGCTTCCGGAGGCGGAGGCAGCG
GTGGCAGCCGCAAGGGCTCTGCCACGGCGCAGAGTGGGATGGAGGAGGAG
GACGTTTTCAGGGCAACCGAAAAGATGCGATCGCTCATCATTCAGATGAA
AGCGGACACAGCCGAGGGTAACGCGGGCGGCGACACTGGATAA back to top
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