mRNA_E_fasciculatus_S2_contig9669.17674.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9669.17674.1
Unique NamemRNA_E_fasciculatus_S2_contig9669.17674.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9669.17674.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B5_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.350e-43
Identity = 76/121 (62.81%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:    1 MHRLHRGVEESSEIDGRVEEETWTGDIRGAQEREGESAMGDSHLGETCTLDGCASGPTHGVKGKKAEFCVTHAVAGSVNVTKXXXXXXXXXXXXXXXXGSKKGIFCSKHAPSGMVNLALRS 363
            MHRL RG EESSE+DG V+EE WT  IRGA+ R+GE A+G S LGE+C LDGC   PTHGVKGKKA FCV+H +AGSVNVTK                GSKK  FCSKHAPSG+VNLA+ S
Sbjct:    1 MHRLFRGAEESSEVDGNVKEEMWTDGIRGAETRKGEQALGGSPLGESCPLDGCTRKPTHGVKGKKAVFCVSHIIAGSVNVTKECTADGCFTGAKFGVAGSKKEKFCSKHAPSGVVNLAVTS 121
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9669.17674.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.170e-27
Identity = 68/122 (55.74%), Postives = 79/122 (64.75%), Query Frame = 1 
Query:    1 MHRLHRGVEESSEIDGRVEEETWTGDIRGAQ-EREGESAMGDSHLG-ETCTLDGCASGPTHGVKGKKAEFCVTHAVAGSVNVTKXXXXXXXXXXXXXXXXGSKKGIFCSKHAPSGMVNLALR 360
            MHRL+RG  ESSE  G V+EE W+ DIR A+ EREGE AM DSH+G  +CTL GC   PTHGV GKKAEFC  H++A SVNV++                GSKK  F SKHA  GMVNL+ R
Sbjct:    1 MHRLYRGGGESSEFGGVVKEEMWSDDIREAEDEREGELAMSDSHVGGSSCTLYGCTRKPTHGVAGKKAEFCARHSLATSVNVSQECSIDGCSTRAHYGVAGSKKREFXSKHALEGMVNLSNR 122
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9669.17674.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
EsV-1-72.350e-4362.81n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-71.170e-2755.74n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9669contigE_fasciculatus_S2_contig9669:3259..3714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score119.4
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D7G4X8
Model size457
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-02_002070.1
Cds size456
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842612.244688-CDS-E_fasciculatus_S2_contig9669:3258..37141696842612.244688-CDS-E_fasciculatus_S2_contig9669:3258..3714Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9669 3259..3714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9669.17674.1prot_E_fasciculatus_S2_contig9669.17674.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9669 3259..3714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9669.17674.1

>prot_E_fasciculatus_S2_contig9669.17674.1 ID=prot_E_fasciculatus_S2_contig9669.17674.1|Name=mRNA_E_fasciculatus_S2_contig9669.17674.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=152bp
MHRLHRGVEESSEIDGRVEEETWTGDIRGAQEREGESAMGDSHLGETCTL
DGCASGPTHGVKGKKAEFCVTHAVAGSVNVTKECAADGCSTGARFGVAGS
KKGIFCSKHAPSGMVNLALRSCATEGCFTEATYGVAGSKKSESCAMHAKE
GM
back to top

mRNA from alignment at E_fasciculatus_S2_contig9669:3259..3714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9669.17674.1 ID=mRNA_E_fasciculatus_S2_contig9669.17674.1|Name=mRNA_E_fasciculatus_S2_contig9669.17674.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=456bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9669:3259..3714+ (Ectocarpus fasciculatus EfasUO2)
ATGCATCGACTCCACCGGGGAGTGGAGGAATCCAGCGAGATTGATGGCAG
AGTCGAGGAAGAGACGTGGACGGGTGACATTCGAGGTGCTCAAGAAAGGG
AGGGAGAGTCAGCAATGGGCGATTCACATCTAGGTGAGACCTGCACCTTA
GACGGATGCGCGAGTGGACCTACCCACGGTGTGAAGGGCAAGAAGGCAGA
GTTCTGCGTGACACATGCTGTTGCGGGCTCGGTCAATGTGACCAAGGAGT
GTGCCGCTGACGGTTGTTCCACTGGTGCGAGGTTCGGCGTGGCTGGCAGC
AAGAAGGGGATATTTTGCTCGAAACATGCGCCAAGCGGCATGGTGAACTT
AGCCCTCAGGAGTTGCGCTACCGAGGGTTGCTTCACGGAAGCAACCTATG
GCGTGGCAGGCAGCAAGAAGAGTGAATCCTGCGCGATGCATGCAAAGGAG
GGGATG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9669:3259..3714+

>mRNA_E_fasciculatus_S2_contig9669.17674.1 ID=mRNA_E_fasciculatus_S2_contig9669.17674.1|Name=mRNA_E_fasciculatus_S2_contig9669.17674.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=456bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9669:3259..3714+ (Ectocarpus fasciculatus EfasUO2)
ATGCATCGACTCCACCGGGGAGTGGAGGAATCCAGCGAGATTGATGGCAG
AGTCGAGGAAGAGACGTGGACGGGTGACATTCGAGGTGCTCAAGAAAGGG
AGGGAGAGTCAGCAATGGGCGATTCACATCTAGGTGAGACCTGCACCTTA
GACGGATGCGCGAGTGGACCTACCCACGGTGTGAAGGGCAAGAAGGCAGA
GTTCTGCGTGACACATGCTGTTGCGGGCTCGGTCAATGTGACCAAGGAGT
GTGCCGCTGACGGTTGTTCCACTGGTGCGAGGTTCGGCGTGGCTGGCAGC
AAGAAGGGGATATTTTGCTCGAAACATGCGCCAAGCGGCATGGTGAACTT
AGCCCTCAGGAGTTGCGCTACCGAGGGTTGCTTCACGGAAGCAACCTATG
GCGTGGCAGGCAGCAAGAAGAGTGAATCCTGCGCGATGCATGCAAAGGAG
GGGATG
back to top