mRNA_E_fasciculatus_S2_contig9665.17672.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9665.17672.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN9_ECTSI) HSP 1 Score: 901 bits (2329), Expect = 0.000e+0 Identity = 431/522 (82.57%), Postives = 456/522 (87.36%), Query Frame = 1
Query: 1 MTGITAPCTCSVDGRSGLADTRYKGYSFTGCGAHVDYTLSTFEGGGYESTWCYVTSPPDCPGYSPYIPEGLKTDNTLPEWEADGAAWKECYDGYRCEAWWGGLEGSPDGEPVVLDAPLDWPDCCALCSGGGNDDGNGSGTNSTCVAWSFDPSTGSCQRMSTVEETSYDYSWGAWNYNSTVNGYPGYFEAPITDCWGRTQYDLCVNTNAALIIPGMIVAFISLCCMCLEGFCAPSKRAGLLWELAIEQPQSSRLVKAACVEVTCNRTVKSTGKGSTTIIYTYKGTFVTRDGALFVLPHPNPKLSGPKPSCRIEKRMLRVLHNTNRNPRADPSVTRRCETPDGLRAEFSKMVRAVPAKPAAGTNGEPFYRSHVQGRPDMPIARDAAADQRFDCILLVGMDQTA--PTKVLLVGILGEDRITCVDEEVLGASCADLCCASFCFVLGTIVLFIMCITLLTNEAAQNMAAWTFEGDHRVGAIVGLVLCTCVPLSLFVWKCRKSGKLLRSIRDCPLVAESDRVIDSRT 1560
MTGITAPCTCSVDG SGLADTRY+GYSFTGCGAHVDYTL+TFEGGGYE TWCYVTSPPDCPG SPYIPEG KTDNTLPEWEA GAAWKECYDGYRCEAWWGGLEGSPDGEPVVLDAPLDWPDCCALCSG G+ T STCVAWSFDPSTGSCQRMSTV E SYDYSWGAWN N+T++GYPGYFEAP+TDCWGR+QYDLCVNTNAA IIPG+IVAFISLCCM GFCAPS RAGLL ELAIEQPQSSRLVK AC EV C +TVKSTGKG T I YTY GTFVTRDGA+F LP P + + S RIEKRML VLHNT RNPRADPS+ RRCETPDGLRAEFSKMVRAVP KP A +G FYRSHV G P++P+ RDAA D RFDCILLVG ++ PTKVLLVGILGEDRITCV E+VLGAS AD CCASFCFVL +LFIMCITLLTNEAAQNMAAWTFEGDHRVGAI+GLVLCTCVPLSLFVWKCRKSGKLLRSIR+CPLVAESDRVI+SRT
Sbjct: 1 MTGITAPCTCSVDGVSGLADTRYQGYSFTGCGAHVDYTLNTFEGGGYERTWCYVTSPPDCPGESPYIPEGFKTDNTLPEWEALGAAWKECYDGYRCEAWWGGLEGSPDGEPVVLDAPLDWPDCCALCSGSGSXXXXXXXTTSTCVAWSFDPSTGSCQRMSTVAEPSYDYSWGAWNSNNTISGYPGYFEAPLTDCWGRSQYDLCVNTNAAFIIPGVIVAFISLCCMWASGFCAPSARAGLLRELAIEQPQSSRLVKVACAEVACTKTVKSTGKGGTKITYTYNGTFVTRDGAVFNLPPPTRRPKMHEASRRIEKRMLSVLHNTKRNPRADPSLARRCETPDGLRAEFSKMVRAVPRKPEASRSGGSFYRSHVLGHPNVPVERDAAVDHRFDCILLVGTEEPGRTPTKVLLVGILGEDRITCVGEDVLGASVADFCCASFCFVLAAALLFIMCITLLTNEAAQNMAAWTFEGDHRVGAIIGLVLCTCVPLSLFVWKCRKSGKLLRSIRECPLVAESDRVINSRT 522
BLAST of mRNA_E_fasciculatus_S2_contig9665.17672.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC3_9PHAE) HSP 1 Score: 474 bits (1220), Expect = 1.030e-161 Identity = 253/468 (54.06%), Postives = 295/468 (63.03%), Query Frame = 1
Query: 160 VTSPPDCPGYSPYIPEGLKTDNTLPEWEADGAAWKECYDGYRCEAWWGGLEGSPDGEPVVLDAPLDWPDCCALCSGGGNDDGNGSGTNSTCVAWSFDPSTGSCQRMSTVEETSYDYSWGAWNYNSTVNGYPGYFEAPITDCWGRTQYDLCVNTNAALIIPGMIVAFISLCCMCLEGFCAPSKRAGLLWELAIEQPQSSRLVKAACVEVTCNRTVKSTGKGSTTIIYTYKGTFVTRDGALFVLPHPNPKLSGPKPSCRIEKRMLRVLHNTNRNPRADPSVTRRC-ETPDGLRAEFSKMVRAVPAKPAAGTNGEPFYRSHVQGRPDMPIARDAAADQRFDCILLVGMDQTAPTKVLLVGILGEDRITCVDEEVLGASCADLCCASFCFVLGTIVLFIMCITLLTNEAAQNMAAWTFEGDHRVGAIVGLVLCTCVPLSLFVWKCRKSGKLLRSIRDCPLVAESDRVIDSRT 1560
VTSPPDCPG S YIPEG KTDNTLPEWE +GAAWKE +D RC+AWWGGL GSP+GEPVVLDAPLDWPDCCALCSGGG+DDG + T +TC AWSFDPSTGSCQRMS VE TS + +WGAW Y TV GYPGYFEAPI DCW R +YDLCVN + LI+PGM VAF S+ CM V C + + +GKG YTYKGTF DGALFVLP P + P+ S +IEKRMLRVL+NTN NPRADP V R ++ D + + S + + DA +VLLVGILGEDRITC+D E+LG+S CASFC VL ++L MC+ LLTNEAAQ+MA WTFEGD+R+GA+VGL+L +CVPLS F W R S KL R ++DCP VAESDRV+ SRT
Sbjct: 33 VTSPPDCPGDSLYIPEGFKTDNTLPEWEDEGAAWKE-WD--RCDAWWGGLGGSPNGEPVVLDAPLDWPDCCALCSGGGDDDG--ANTETTCAAWSFDPSTGSCQRMSAVESTSQNNTWGAWQYKGTVKGYPGYFEAPINDCWSRMKYDLCVNPSMGLIVPGMFVAFWSILCMYFP--------------------------------VGCQKLAQKSGKGGIKYFYTYKGTFAACDGALFVLPPPTRLSNAPRSSHKIEKRMLRVLYNTNLNPRADPGVASRAGDSCDKRKRQISNPI----------------------------VPHDA--------------------RVLLVGILGEDRITCIDHELLGSSSCCRSCASFCLVLAAVMLVTMCVALLTNEAAQHMAEWTFEGDYRIGAVVGLMLRSCVPLS-FAWNYRNSNKLFRLVKDCP-VAESDRVVHSRT 413
BLAST of mRNA_E_fasciculatus_S2_contig9665.17672.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X7_9PHAE) HSP 1 Score: 270 bits (689), Expect = 7.970e-85 Identity = 141/221 (63.80%), Postives = 152/221 (68.78%), Query Frame = 1
Query: 160 VTSPPDCPGYSPYIPEGLKTDNTLPEWEADGAAWKECYDGYRCEAWWGGLEGSPDGEPVVLDAPLDWPDCCALCSGGGNDDGNGSGTNSTCVAWSFDPSTGSCQRMSTVEETSYDYSWGAWNYNSTVNGYPGYFEAPITDCWGRTQYDLCVNTNAALIIPGMIVAFISLCCMCLEGFCAPSKRAGLLWELA--------IEQPQSSRLVKAACVEVTCNRT 798
VTSPPD PG SPYIPEG KTDNTLP EA+GAAWKECYDG RC+AWWGGLEGSPDGEPVVLDAPLDWPDCCALC+GGG++DG+GSGTNSTCVAWSFDPSTG CQRM TVEETSYDYSW W ++T+NG L CM GFCA S RAGLL ELA IEQPQSSRLVKAACV+V + T
Sbjct: 13 VTSPPDFPGESPYIPEGFKTDNTLPLREANGAAWKECYDGNRCDAWWGGLEGSPDGEPVVLDAPLDWPDCCALCNGGGDNDGDGSGTNSTCVAWSFDPSTGWCQRMPTVEETSYDYSWTTWQNSNTING---------------------------------------LMCMHCLGFCARSTRAGLLRELAVEQQQSSPIEQPQSSRLVKAACVKVRVHET 194 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9665.17672.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9665.17672.1 >prot_E_fasciculatus_S2_contig9665.17672.1 ID=prot_E_fasciculatus_S2_contig9665.17672.1|Name=mRNA_E_fasciculatus_S2_contig9665.17672.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=521bp MTGITAPCTCSVDGRSGLADTRYKGYSFTGCGAHVDYTLSTFEGGGYESTback to top mRNA from alignment at E_fasciculatus_S2_contig9665:45..3817- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9665.17672.1 ID=mRNA_E_fasciculatus_S2_contig9665.17672.1|Name=mRNA_E_fasciculatus_S2_contig9665.17672.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3773bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9665:45..3817- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9665:45..3817- >mRNA_E_fasciculatus_S2_contig9665.17672.1 ID=mRNA_E_fasciculatus_S2_contig9665.17672.1|Name=mRNA_E_fasciculatus_S2_contig9665.17672.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1563bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9665:45..3817- (Ectocarpus fasciculatus EfasUO2)back to top |