mRNA_E_fasciculatus_S2_contig9654.17665.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9654.17665.1
Unique NamemRNA_E_fasciculatus_S2_contig9654.17665.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17665.1 vs.
Match: CRAL-TRIO (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.390e-28
Identity = 76/116 (65.52%), Postives = 79/116 (68.10%), Query Frame = -1 
Query:    1 SGAGNRTAAAAADGSGKHHITFRSLFERLQSRDDPRELAXXXXXXXXXXXXXXXXXXXXXLGSSPSISRAASFHSHASSFYSPPLSRHGSNASXXXXXXXXXXXSRRQDPRLSPGR 348
            SGAG+RTAAA   GSGK+HITFRSLFERLQ+RDDPREL                      LGSSPSISRA SFHSHASSFYSPPLSRHGSNAS           SRRQDPRLSPGR
Sbjct:  517 SGAGDRTAAA---GSGKNHITFRSLFERLQARDDPRELTAAAATAGGPQRRR--------LGSSPSISRATSFHSHASSFYSPPLSRHGSNASASGHGDGGG--SRRQDPRLSPGR 619
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17665.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.040e-26
Identity = 101/126 (80.16%), Postives = 105/126 (83.33%), Query Frame = -1 
Query:    1 RGSSRRNSGSSGAGNRTAAAAADGSGKHHITFRSLFERLQSRDDPRELAXXXXXXXXXXXXXXXXXXXXXLGSSPSISRAASFHSHASSFYSPPLSRHGSNASXXXXXXXXXXXSRRQDPRLSPGR 378
            RGSSR+NSGSSGAG+RTA     GSGK HITFRSLFERLQ+RDDPREL  XXXXXXXXXXXXXXX        SPSI RAASFH+HASSFYSPPLSRHGSN   XXXXXXXXXX RRQDPRLSPGR
Sbjct:  581 RGSSRQNSGSSGAGDRTAGG---GSGKSHITFRSLFERLQARDDPRELTAXXXXXXXXXXXXXXX--------SPSIPRAASFHNHASSFYSPPLSRHGSNX--XXXXXXXXXXXRRQDPRLSPGR 693
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9654.17665.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
CRAL-TRIO2.390e-2865.52domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.040e-2680.16protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9654contigE_fasciculatus_S2_contig9654:4118..4495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size379
Hectar predicted targeting categorymitochondrion
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842611.2907517-CDS-E_fasciculatus_S2_contig9654:4117..44951696842611.2907517-CDS-E_fasciculatus_S2_contig9654:4117..4495Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9654 4118..4495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9654.17665.1prot_E_fasciculatus_S2_contig9654.17665.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9654 4118..4495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9654.17665.1

>prot_E_fasciculatus_S2_contig9654.17665.1 ID=prot_E_fasciculatus_S2_contig9654.17665.1|Name=mRNA_E_fasciculatus_S2_contig9654.17665.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp
PARRQPRILTPAAPAPAAAVARGAGVAAVPRQRRGIKRRRVAVERRGSRD
RRRGPQSPPPRGTTAGSSGGGSDGGGGGELAGIVPRLQPLEQAPEGDVVL
AATVGGGGGGAVPGAAATAVPPAAPT
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mRNA from alignment at E_fasciculatus_S2_contig9654:4118..4495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9654.17665.1 ID=mRNA_E_fasciculatus_S2_contig9654.17665.1|Name=mRNA_E_fasciculatus_S2_contig9654.17665.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9654:4118..4495+ (Ectocarpus fasciculatus EfasUO2)
CCTGCCCGGCGACAGCCGCGGATCTTGACGCCGGCTGCCCCCGCCCCCGC
CGCCGCCGTGGCCCGAGGCGCTGGCGTTGCTGCCGTGCCTCGACAGCGGC
GGGGAATAAAACGACGACGCGTGGCTGTGGAACGACGCGGCTCGAGAGAT
CGACGGCGAGGACCCCAGTCGCCGCCGCCCCGGGGGACCACCGCCGGTAG
CAGCGGTGGCGGCAGCGACGGCGGCGGCGGCGGCGAGCTCGCGGGGATCG
TCCCTAGACTGCAGCCGCTCGAACAGGCTCCTGAAGGTGATGTGGTGCTT
GCCGCTACCGTCGGCGGCGGCGGCGGCGGTGCGGTTCCCGGCGCCGCTGC
TACCGCTGTTCCGCCGGCTGCTCCCACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9654:4118..4495+

>mRNA_E_fasciculatus_S2_contig9654.17665.1 ID=mRNA_E_fasciculatus_S2_contig9654.17665.1|Name=mRNA_E_fasciculatus_S2_contig9654.17665.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9654:4118..4495+ (Ectocarpus fasciculatus EfasUO2)
CCTGCCCGGCGACAGCCGCGGATCTTGACGCCGGCTGCCCCCGCCCCCGC
CGCCGCCGTGGCCCGAGGCGCTGGCGTTGCTGCCGTGCCTCGACAGCGGC
GGGGAATAAAACGACGACGCGTGGCTGTGGAACGACGCGGCTCGAGAGAT
CGACGGCGAGGACCCCAGTCGCCGCCGCCCCGGGGGACCACCGCCGGTAG
CAGCGGTGGCGGCAGCGACGGCGGCGGCGGCGGCGAGCTCGCGGGGATCG
TCCCTAGACTGCAGCCGCTCGAACAGGCTCCTGAAGGTGATGTGGTGCTT
GCCGCTACCGTCGGCGGCGGCGGCGGCGGTGCGGTTCCCGGCGCCGCTGC
TACCGCTGTTCCGCCGGCTGCTCCCACG
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