mRNA_E_fasciculatus_S2_contig9635.17645.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9635.17645.1
Unique NamemRNA_E_fasciculatus_S2_contig9635.17645.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9635.17645.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL3_9PHAE)

HSP 1 Score: 845 bits (2182), Expect = 1.070e-286
Identity = 740/1137 (65.08%), Postives = 779/1137 (68.51%), Query Frame = 1 
Query:  151 TTADFAPGESMRSLGGAGEKPDADQVVASDCDSEGSGGGGVPCGASSVVGESTIALP---AGLESVAVA--QDRDVSPAAAALADGSEAATA---VSQDDLDSSMVDEMDAWIADDQDIGVLRAEGSGPLDPPEGKEEQDDAVARAGGGHMAPEPREGPGAADSTPXXXXXXXXXXALVDGSEEGMGETLPNPT-AVVREEPRVVEVAASSGGGAEIPPRVEVPPAMETAREMAGEERVRQEEEREERPGTACSVTDAPPP-FEAPPEYDPSAIEEVRLVAGAGGVSADEGSAGGLPLMTTPVLEAGLGGNAEEGAVLAAVGKTVSEDPTPVVERVDEAVTETLVAAPTMSAAAAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAATDGSAALRAAEPGSLEGSSESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQDAEVLVRESALAAMADRAASQTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------LLASAEAASXXXXXXXXXXEAEXALEAVAGPDATGGVETTAAESAAPLSEAVAGADDDLVITDTTQAGTEKAGVPR---GDAVSTVGAAPGSAEPPAMPDPVVATAATPVEVVDEPSGIGAGAGXXXXXIAEAXXXXXXXXXXXXXESSSLDGAAQASGERGEWEASATRDTVDGADADPPVAVLLPPVFSDGSXXXXXXXXXXXXXXXXXAVEPAGATILSGSVTAEVFASRSGTGAVPWPGSSEDDESDGGXXXXXXXXXXXXCRSSSRNQMSVEEAAAFMNPGGAGTGRMXXXXXXXXSSWGGASAIGHLDRILGLPTAVPAEISPGATVAAAXXXXXXXXXXXXXXXXXXXXXXXGAPSLGAPFVGPDDFLSPSSVGMSGLAARRFSSSSAVMQSFPSSGGVAEEDAGGGLGVRRSTVNEITSSRGAELGGDEAKASQAAGVGIKEVVIAEGDGASDGDDSSGAXXXXXGVGPTGRAAEEKPAAAPTEAQEEAPTLLLRRGEEGRGGKEAAVQAVSTVVTGQGGTGTGSGGSGLRNSRGEGGIVGEXXXXXXXXXXXXXLGASESAATSFAGAEGEAGWPPDGVEGRAAVLGTRAAAGGGCCVVS 3504
            TTAD A GE  RSLG AGE  DA  +VAS CDS+ SGGG VPCGASSV  ES I  P   AG E VAVA  QDRD SP AAALA  SEAATA   VSQ DLDSSMVDEMDAWIAD+ D   LRAE SGPLDPPEG  E+D AVA  GGG MAP  R+GPG  DSTP          AL DG+E+G GE  PNPT AV+ EE RVV VAASSG G E PPRV V PAMET+REMAGE R RQ++E  ERP TA S T APPP F+  PE+DPSA+EEVR  A A GV  +  +A  +PL TT V+EAGLGGNAEE A LAAVGK VS   TP VER+D+A TETL A PT      P   XXXXXXXXXXXXXXXXXXXXXX             GVAA D             +      XXXXXXXXXXXXXXXX                              PEQ  EVL R+ ALAA+A+ AAS TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LLASA    XXXXXXXXXX   X                          EA   ADDDLV+T   QAG +K G+     GDAVSTVG APGS EPPAMPD VVA AATPVEVVDEPS I AG       ++      XXXXXXXXX  SS D AAQA GE GE  ASATR  VDGADADPPVA  LPPVFSDGS                 AVEP GATILSGSVTAEVFASRSGTGA+PWP SSEDDES+ G             RSSSRN MSVEEAAAFMNPGGAGTGRMXXXXXXXXSSWGGASAIGHLDRILGLPTAVP E SPGAT    XXXXXXXXXXXXXXXXXXXXX   AP LG PFVGPDDFLSPSSVGMSGLAARRFS S+AVMQ F SSGGVAE DA GGLGVRRSTVNEI SSRGAEL  DEA+ASQAAGVGIKEVV+AEGDGASD DDS  A     GV PT RAAEEKPA A T+ QEE PTLLLRRGEEG+GGK AAVQAVSTVV GQ GT   SGGSGLR+S GE  I GE             L ASESAATSFAGAEGEAGWPP GVEGR+AV GTRAAAGGGCCV+S
Sbjct:   51 TTADLASGEVTRSLGDAGENTDAALLVASACDSKVSGGGAVPCGASSVAVESVIPFPGLVAGSEDVAVAVVQDRDGSPPAAALAGDSEAATATADVSQQDLDSSMVDEMDAWIADEHDSSALRAERSGPLDPPEG--EEDGAVAHGGGGRMAPGARDGPGVVDSTPPSSPTASA--ALADGNEDGGGEA-PNPTTAVLPEEARVVGVAASSGEGVETPPRVAVLPAMETSREMAGEARERQQKETVERPETARSATQAPPPPFDTGPEHDPSAMEEVRSGAAADGVPTEGETARAVPLTTTLVVEAGLGGNAEENAALAAVGKPVSGGITPAVERIDKAATETLAATPT------PAXXXXXXXXXXXXXXXXXXXXXXXXASPMPPESPSEPFGVAAKD-------------DXXXXXXXXXXXXXXXXXXXXXXASLSNEEATFTLPASPTTSADINDNNTAACPEQGVEVLARDVALAAVAEEAASLTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAALLASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEA-GSADDDLVMTKANQAGADKVGMRTVFGGDAVSTVGPAPGSVEPPAMPDSVVAAAATPVEVVDEPSEIQAGV------VSPIAGAAXXXXXXXXXXXSSHDVAAQALGEGGEGGASATRAAVDGADADPPVAAPLPPVFSDGSGGSESDAAAAVA-----AVEPTGATILSGSVTAEVFASRSGTGAIPWPDSSEDDESNHGDEYDGGDKNGR--RSSSRNHMSVEEAAAFMNPGGAGTGRMXXXXXXXXSSWGGASAIGHLDRILGLPTAVPPESSPGATXXXXXXXXXXXXXXXXXXXXXXXXX---APPLGEPFVGPDDFLSPSSVGMSGLAARRFSFSAAVMQGFASSGGVAE-DAVGGLGVRRSTVNEIRSSRGAELCSDEAEASQAAGVGIKEVVVAEGDGASDDDDSIDAGEEG-GVRPTERAAEEKPAPAATQVQEETPTLLLRRGEEGQGGKAAAVQAVSTVVAGQEGTSNRSGGSGLRDSSGEAVIAGEGVGGVKNSDGNEGLDASESAATSFAGAEGEAGWPPGGVEGRSAVSGTRAAAGGGCCVMS 1144
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9635.17645.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY0_ECTSI)

HSP 1 Score: 764 bits (1972), Expect = 3.440e-257
Identity = 690/1188 (58.08%), Postives = 721/1188 (60.69%), Query Frame = 1 
Query:    1 MAKRSKKKGRSKXXXXXXXXXXXXXXXXXXXNPTLPAAGSXXXXXXXXXATTADFAPGESMRSLGGAGEKPDADQVVASDCDSEGSGGGGVPCGASSVVGESTIALP---AGLESVAVAQDRDVSPAAAALADGSEAATA---VSQDDLDSSMVDEMDAWIADDQDIGVLRAEGSGPLDPPEGKEEQDDAVARAGGGHMAPEPREGPGAADSTPXXXXXXXXXXALVDGSEEGMGETLPNPT-AVVREEPRVVEVAASSGGGAEIPPRVEVPPAMETAREMAGEERVRQEEEREERPGTACSVTDAPPPFEAPPEYDPSAIEEVRLVAGAGGVSADEGSAGGLPLMTTPVLEAGLGGNAEEGAVLAAVGKTVSEDPTPVVERVDEAVTETLVAAPTMSAAAAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAATDGSAALRAAEPGSLEGSSESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQDAEVLVRESALAAMADRAASQTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------LLASAEAASXXXXXXXXXXEAEXALEAVAGPDATGGVETTAAESAAPLSEAVAGADDDLVITDTTQAGTEKAGVPR---GDAVSTVGAAPGSAEPPAMPDPVVATAATPVEVVDEPSGIGAGAGXXXXXIAEAXXXXXXXXXXXXXESSSLDGAAQASGERGEWEASATRDTVDGADADPPVAVLLPPVFSDGSXXXXXXXXXXXXXXXXXAVEPAGATILSGSVTAEVFASRSGTGAVPWPGSSEDDESDGGXXXXXXXXXXXXCRSSSRNQMSVEEAAAFMNPGGAGTGRMXXXXXXXXSSWGGASAIGHLDRILGLPTAVPAEISPGATVAAAXXXXXXXXXXXXXXXXXXXXXXXG---APSLGAPFVGPDDFLSPSSVGMSGLAARRFSSSSAVMQSFPSSGGVAEEDAGGGLGVRRSTVNEITSSRGAELGGDEAKASQAAGVGIKEVVIAEGDGASDGDDSSGAXXXXXGVGPTGRAAEEKPAAAPTEAQEEAPTLLLRRGEEGRGGKEAAVQAVSTVVTGQGGTGTGSGGSGLRNSRGEGGIVGEXXXXXXXXXXXXXLGASESAATSFAGAEGEAGWPPDGVEGRAAVLGTRAAAGGGCCVVS 3504
            MAKRSKKKGRSK        XXXXXXXXXX +PTLPAAGS  XXXXXXX TTADFA GE MRSLGGAGE  DADQ+VA DCDSEGS  G VPCGA  VV ES I+LP   AG E+VA+AQDRD SP AAALA GSEAATA   VSQ DLDS MVDEMDAWIADD D  V+RAEGSGPL PPEG EE+D AV   GGG MA E R+GPGAADSTP          AL D +E+GMGET PNPT AV+ EE +VV VAASSG G E PPRVE  PAMETAREMAGE RVRQEEE  ERPGTACSVTDAPPPF+  PE+DPSAIEE  L                                                               TL A+PT SA                                               + +AA                                                              PEQ  EV+VR+SALAA+A+ AASQTP  XXXXXXXXXXXXXX           XXX       LLASA+   XXXXXXXXXX   X                                +D LV+T   Q G +K GV     GDAVSTVG APGS EPPAMPD V+A AATPV+VVDEPSGI AG       IAEA  XXXXXXXXXXX                               ADPPVA  LPPVFSDGS                 A EP GATILSGSVTAEVFASRSGTGA+PWP SSEDDE    XXXXXXXXXXXX        MSVEEAAAFMNPGGAGT   XXXXXXXXSSWGGASAIGHLDRILGLPTAVPAE SPGA     XXXXXXXXXXXXXXXXXXXXXXX    AP LG PFVGPDDFLSPSSVGM GLAARRFSSS+AVMQ F SSGG AE  AGGGLGVRRSTVNEI SSRGAEL G+EAKASQAAGVG+KEVVIAEGDGASD DDS GA     GV  T RAAEEKPA A TE QEE PTLLLRRGEEGRGGK AAVQAVS VV GQGGT   SGGSGLRNSRGE  I GE             L ASESAATSFAG EGEAGWPP GVEGRAAV GTRAAAGGGCCVVS
Sbjct:    1 MAKRSKKKGRSKRGRGGEKGXXXXXXXXXXGDPTLPAAGSTEXXXXXXXXTTADFASGEGMRSLGGAGENTDADQLVAPDCDSEGSDSGAVPCGAPPVVVESAISLPGLAAGSEAVAMAQDRDGSPPAAALAGGSEAATAAAGVSQQDLDSPMVDEMDAWIADDHDSSVVRAEGSGPLGPPEG-EEEDGAVVYEGGGRMASEARDGPGAADSTPPSSPTASA--ALADDNEDGMGET-PNPTKAVLPEEAKVVGVAASSGAGVETPPRVEALPAMETAREMAGEARVRQEEESVERPGTACSVTDAPPPFDTGPEHDPSAIEEATL---------------------------------------------------------------TLPASPTTSA--------------------------------------------DINNNTAAC-------------------------------------------------------------PEQGVEVVVRDSALAAVAEGAASQTPLLXXXXXXXXXXXXXXDTGREKATAAKXXXASARAAALLASAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXED-LVMTKAAQVGADKVGVQAVFGGDAVSTVGPAPGSVEPPAMPDSVLAAAATPVKVVDEPSGIEAGV---VSPIAEAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPPVAAPLPPVFSDGSGGSESDVAAA-------AAEPTGATILSGSVTAEVFASRSGTGAIPWPDSSEDDEXX--XXXXXXXXXXXXXXXXXXXHMSVEEAAAFMNPGGAGTXXXXXXXXXXXSSWGGASAIGHLDRILGLPTAVPAESSPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPLGEPFVGPDDFLSPSSVGMRGLAARRFSSSAAVMQGFASSGGAAEV-AGGGLGVRRSTVNEIASSRGAELCGEEAKASQAAGVGMKEVVIAEGDGASDDDDSIGAGEGG-GVRLTDRAAEEKPAPAETEVQEETPTLLLRRGEEGRGGKAAAVQAVSAVVPGQGGTSNRSGGSGLRNSRGEAVIAGEGVGGVKNSDGNDGLDASESAATSFAGPEGEAGWPPGGVEGRAAVSGTRAAAGGGCCVVS 1001
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9635.17645.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.070e-28665.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.440e-25758.08protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9635contigE_fasciculatus_S2_contig9635:1242..5742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size3507
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002010.1
Cds size3507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842609.3428786-CDS-E_fasciculatus_S2_contig9635:1241..29581696842609.3428786-CDS-E_fasciculatus_S2_contig9635:1241..2958Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9635 1242..2958 +
1696842609.3579264-CDS-E_fasciculatus_S2_contig9635:3772..41011696842609.3579264-CDS-E_fasciculatus_S2_contig9635:3772..4101Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9635 3773..4101 +
1696842609.3681903-CDS-E_fasciculatus_S2_contig9635:4176..43931696842609.3681903-CDS-E_fasciculatus_S2_contig9635:4176..4393Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9635 4177..4393 +
1696842609.3777559-CDS-E_fasciculatus_S2_contig9635:4498..57421696842609.3777559-CDS-E_fasciculatus_S2_contig9635:4498..5742Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9635 4499..5742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9635.17645.1prot_E_fasciculatus_S2_contig9635.17645.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9635 1242..5742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9635.17645.1

>prot_E_fasciculatus_S2_contig9635.17645.1 ID=prot_E_fasciculatus_S2_contig9635.17645.1|Name=mRNA_E_fasciculatus_S2_contig9635.17645.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1169bp
MAKRSKKKGRSKGGGGGQKNAASSGGGSGGGNPTLPAAGSAESGGDSGGA
TTADFAPGESMRSLGGAGEKPDADQVVASDCDSEGSGGGGVPCGASSVVG
ESTIALPAGLESVAVAQDRDVSPAAAALADGSEAATAVSQDDLDSSMVDE
MDAWIADDQDIGVLRAEGSGPLDPPEGKEEQDDAVARAGGGHMAPEPREG
PGAADSTPPSSPTAAAAAALVDGSEEGMGETLPNPTAVVREEPRVVEVAA
SSGGGAEIPPRVEVPPAMETAREMAGEERVRQEEEREERPGTACSVTDAP
PPFEAPPEYDPSAIEEVRLVAGAGGVSADEGSAGGLPLMTTPVLEAGLGG
NAEEGAVLAAVGKTVSEDPTPVVERVDEAVTETLVAAPTMSAAAAPPAAT
AALAASPAAPAAAAAAAAAAAASPTPPASPSEPSGVAATDGSAALRAAEP
GSLEGSSESPPPPAFASVRREETTLTLPASPTTSTDNNNNNNNNNNNNNN
NNTAACPEQDAEVLVRESALAAMADRAASQTPPQPSATGGGGSGREKATA
AKAAAASARAAALLASAEAASAAQVAAAAVAEAEAALEAVAGPDATGGVE
TTAAESAAPLSEAVAGADDDLVITDTTQAGTEKAGVPRGDAVSTVGAAPG
SAEPPAMPDPVVATAATPVEVVDEPSGIGAGAGAASPPIAEAATAAAAAV
TAAASESSSLDGAAQASGERGEWEASATRDTVDGADADPPVAVLLPPVFS
DGSGGGSESDAAAAAAVSAAAVEPAGATILSGSVTAEVFASRSGTGAVPW
PGSSEDDESDGGDEYDGGDNNNSGCRSSSRNQMSVEEAAAFMNPGGAGTG
RMGSGRFASGSSWGGASAIGHLDRILGLPTAVPAEISPGATVAAADGGSG
GAPGGGFSSSSGWLLLGGGAPSLGAPFVGPDDFLSPSSVGMSGLAARRFS
SSSAVMQSFPSSGGVAEEDAGGGLGVRRSTVNEITSSRGAELGGDEAKAS
QAAGVGIKEVVIAEGDGASDGDDSSGAGGEGGGVGPTGRAAEEKPAAAPT
EAQEEAPTLLLRRGEEGRGGKEAAVQAVSTVVTGQGGTGTGSGGSGLRNS
RGEGGIVGEGVGGVKNSDGDGGLGASESAATSFAGAEGEAGWPPDGVEGR
AAVLGTRAAAGGGCCVVS*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9635:1242..5742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9635.17645.1 ID=mRNA_E_fasciculatus_S2_contig9635.17645.1|Name=mRNA_E_fasciculatus_S2_contig9635.17645.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4501bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9635:1242..5742+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCAAGCGCTCGAAGAAAAAGGGAAGATCTAAAGGCGGCGGGGGCGG
GCAAAAGAACGCGGCGAGCAGTGGCGGCGGTAGCGGGGGCGGCAACCCGA
CACTACCGGCTGCGGGGTCCGCGGAGAGCGGGGGCGATAGCGGCGGCGCA
ACGACGGCCGACTTCGCACCAGGAGAGAGCATGCGAAGCCTAGGGGGCGC
GGGCGAAAAACCTGACGCGGACCAGGTAGTTGCGTCTGACTGTGATAGTG
AAGGTAGTGGTGGTGGTGGTGTGCCCTGTGGTGCTTCGTCTGTTGTCGGG
GAGAGCACGATTGCTCTCCCCGCTGGCTTGGAGAGCGTGGCTGTGGCCCA
AGACCGGGACGTTTCTCCTGCCGCGGCGGCTCTTGCTGACGGCTCAGAGG
CGGCCACCGCGGTTTCGCAGGACGACCTGGATAGCTCCATGGTCGACGAG
ATGGACGCGTGGATTGCCGACGACCAAGACATCGGTGTGCTGCGGGCAGA
GGGAAGCGGTCCTCTTGACCCTCCGGAAGGAAAGGAAGAACAAGATGATG
CCGTCGCGCGTGCGGGTGGCGGGCACATGGCTCCCGAACCAAGAGAAGGG
CCGGGCGCGGCAGATTCGACCCCGCCATCGTCTCCGACTGCGGCGGCGGC
GGCGGCACTCGTCGACGGCAGCGAGGAGGGGATGGGGGAGACGTTGCCGA
ATCCAACCGCAGTCGTGCGAGAAGAACCGAGGGTTGTGGAGGTGGCCGCC
AGCTCCGGAGGGGGAGCAGAAATCCCGCCGCGAGTTGAGGTACCACCAGC
CATGGAAACAGCGCGGGAAATGGCCGGGGAGGAGAGAGTACGGCAGGAAG
AGGAGCGCGAAGAGCGACCGGGGACGGCATGCAGCGTGACGGACGCACCC
CCGCCCTTCGAGGCGCCCCCCGAGTATGATCCAAGTGCTATCGAGGAGGT
GCGGTTAGTAGCGGGTGCCGGTGGCGTTTCTGCCGACGAGGGATCGGCGG
GGGGGTTGCCTTTGATGACGACGCCGGTGTTGGAAGCAGGATTGGGCGGA
AACGCTGAGGAGGGCGCCGTTTTGGCGGCGGTAGGAAAGACCGTGTCGGA
AGACCCCACCCCGGTTGTAGAGAGGGTAGACGAAGCGGTCACGGAGACGT
TGGTAGCAGCACCGACAATGTCTGCAGCAGCAGCTCCACCTGCAGCAACA
GCAGCATTAGCAGCATCGCCAGCGGCACCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATCACCTACGCCGCCGGCATCACCTTCAGAACCCT
CCGGCGTGGCCGCCACGGACGGTAGCGCAGCGCTCCGCGCCGCAGAGCCG
GGCAGCCTGGAGGGTAGCTCCGAGTCCCCCCCGCCACCGGCCTTCGCATC
GGTGAGGCGTGAGGAGACCACGTTGACTCTTCCGGCGAGCCCCACCACGT
CGACGGACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACACAGCAGCATGCCCAGAGCAAGACGCAGAGGTTTTGGTACGAGA
GTCGGCGTTAGCGGCAATGGCCGACCGGGCGGCATCGCAAACACCGCCGC
AGCCTAGCGCAACCGGCGGTGGCGGCTCCGGCAGAGAGAAAGCTACAGCG
GCGAAGGCGGCGGCGGCATCGGCGAGGGCGGCGGCTCTCTTGGCGTCCGC
AGAGGCGGCATCGGCAGGTAGGTGCTGGTTTTTGAAACGCTTGGTGGTGG
CGTGTCGCTCTTGTGTCGGCTGCCGCTGCTGCTGTTGTTGTGGAGTCTGT
TGTTGTTCCTCGCTGAAATTGTTTGCGTTGGCGGTGCGCTAGTGTGCGGC
TTGTGTTGGGGGAGGATTTTGCGTGCCCGCGACAAGGTTCGGGTGCTTTT
TCGAACCGTCCTAAACGCGAAAAATGGCCCCGATCCGTTGGCTGCGAGCC
CGTTGTATCGTCCGGAAGGAAGGCATTGCAAGAACACTTGGAGCACTGCC
AAGGGCCCTCAAGCCGTTTCAAAGCGCTATTTGTTCAAGCGTTGTGTGTT
TTCTGTGTTTTTTCTGTGGCACACACAACACAAACATGCACGAGAGGAGT
TACGATGGGCACGTGGCGAGAACATCTCGAATAGCCCGGCGTCGGTACAC
TGGCAGTATCCCAAATATTCCTCTCTATATTTTTTCCTGTTGACCTTCTT
CGAATTCTTCGACACCAGCACCGTTGCCCGCTCTCATTCGTCTCGCTGCC
TCGACCTTGGGATCGTTTACGCACCAGTTCAGAAAGAATCGCAGACGTTT
TTTTTTGTTGCCCCGGGACATGCGTTTTCTATGTTTCAGGGACGCGTTTT
CCGTGGGATTTCGCCACACCTCACCATCACCTTTCGTCCCGAGTAGTGTT
CATAGACTTGCATTGATCGTAAGCTGTTCTTCTGGGACCTGGTGACCAGG
TAGAGGCTGCATCCCCTCAACAACAATAACCCTACCCCATCTCTTGCCTC
CCCCCGCCCCGCCTCGGCGCGTTTTTTTCAGCGCAAGTAGCAGCGGCTGC
CGTGGCGGAAGCGGAGGCAGCGCTGGAAGCCGTCGCAGGGCCAGATGCGA
CGGGGGGGGTAGAAACAACCGCGGCTGAATCAGCGGCGCCCCTTTCGGAG
GCAGTCGCCGGGGCCGACGACGACCTGGTCATCACCGACACAACCCAGGC
CGGTACCGAGAAGGCTGGAGTGCCGAGGGGCGACGCAGTATCGACGGTGG
GGGCGGCACCGGGTTCAGCGGAGCCGCCGGCCATGCCCGACCCCGTCGTT
GCGACGGCGGCGACACCTGTTGAAGTAGTGGATGAACCAAGCGGGATTGG
GGCGGGTGCGGTCTCGACAATCACGGAGGCAGCAACGCCGGCGACGGCTG
TTAAAGTTGTGGACGAACCAAGCGGAGCTGAGGAGGGTGCGGCCTCGCCG
CCGATCGCGGAAGCAGCTACGGCGGCGGCGGCGGCAGTGACGGCAGCAGC
ATCGGAGAGTAGCTCTCTTGACGGGGCAGCGCAAGCGTCAGGAGAACGAG
GAGAATGGGAGGCTTCGGCGACACGCGATACGGTGGACGGCGCTGACGCC
GATCCTCCGGTGGCCGTACTCCTGCCCCCCGTGTTTTCGGATGGTTCAGG
AGGTTCAGAGTCGGACGCGGCGGCGGCGACACGCGTTGCGGTGGACGGCG
CTGATGCTGACCCTCCGGTGGTCGCACTCTTGCCCCCCATGTTCTCGGAT
GGTTCAGGAGGTTCAGAGTCGGACGCGGCGGCGGCGGCGGCGGTGTCAGC
GGCGGCGGTAGAACCGGCCGGCGCGACGATCTTGAGCGGCAGCGTGACCG
CGGAGGTGTTCGCTTCGCGCAGCGGAACGGGGGCCGTTCCGTGGCCCGGC
TCAAGCGAGGACGATGAAAGCGACGGTGGCGACGAGTACGACGGCGGCGA
CAACAACAACAGCGGGTGCCGGAGCTCCTCCCGAAACCAGATGTCGGTCG
AAGAGGCGGCGGCCTTCATGAACCCGGGCGGCGCCGGTACCGGCCGCATG
GGCAGCGGCCGATTCGCGTCGGGGTCCTCGTGGGGAGGGGCGTCAGCCAT
CGGTCATCTGGATCGGATCCTTGGGTTGCCTACCGCGGTACCGGCGGAGA
TTTCCCCCGGCGCAACGGTAGCAGCAGCCGACGGCGGCAGCGGCGGCGCG
CCTGGAGGAGGCTTTAGCAGCAGCAGCGGGTGGCTATTGCTCGGTGGCGG
CGCTCCCTCGCTCGGGGCGCCCTTCGTCGGCCCGGACGATTTCCTTTCGC
CTTCGTCTGTCGGCATGAGCGGCCTGGCTGCCCGAAGGTTCAGCTCTAGC
TCCGCCGTGATGCAGAGCTTCCCGTCCAGCGGCGGTGTCGCCGAGGAGGA
CGCGGGCGGCGGCCTGGGGGTACGGCGGTCGACCGTCAACGAAATCACCA
GCAGCCGGGGCGCCGAGCTTGGCGGCGACGAAGCAAAGGCCTCGCAAGCG
GCGGGAGTAGGGATAAAGGAGGTGGTGATTGCCGAGGGCGACGGGGCCAG
CGACGGCGATGATAGCAGCGGTGCCGGTGGTGAGGGGGGCGGTGTTGGAC
CGACTGGGCGAGCCGCCGAAGAAAAGCCAGCTGCAGCCCCGACGGAGGCG
CAGGAAGAGGCGCCGACTTTGCTGCTCCGGAGAGGTGAAGAGGGTCGGGG
GGGGAAGGAGGCGGCCGTCCAGGCGGTTTCTACGGTCGTGACGGGGCAGG
GAGGGACCGGCACCGGAAGCGGCGGCAGCGGGCTCAGAAATAGCAGGGGG
GAGGGTGGCATAGTGGGTGAGGGCGTCGGCGGCGTGAAGAACTCCGACGG
CGATGGCGGTCTCGGTGCTAGCGAGAGCGCGGCGACTAGCTTCGCCGGGG
CGGAGGGAGAGGCGGGGTGGCCACCGGATGGAGTAGAGGGCAGGGCTGCG
GTTTTGGGTACGAGGGCAGCAGCCGGTGGTGGGTGCTGCGTGGTGTCATG
A
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9635:1242..5742+

>mRNA_E_fasciculatus_S2_contig9635.17645.1 ID=mRNA_E_fasciculatus_S2_contig9635.17645.1|Name=mRNA_E_fasciculatus_S2_contig9635.17645.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3507bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9635:1242..5742+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCAAGCGCTCGAAGAAAAAGGGAAGATCTAAAGGCGGCGGGGGCGG
GCAAAAGAACGCGGCGAGCAGTGGCGGCGGTAGCGGGGGCGGCAACCCGA
CACTACCGGCTGCGGGGTCCGCGGAGAGCGGGGGCGATAGCGGCGGCGCA
ACGACGGCCGACTTCGCACCAGGAGAGAGCATGCGAAGCCTAGGGGGCGC
GGGCGAAAAACCTGACGCGGACCAGGTAGTTGCGTCTGACTGTGATAGTG
AAGGTAGTGGTGGTGGTGGTGTGCCCTGTGGTGCTTCGTCTGTTGTCGGG
GAGAGCACGATTGCTCTCCCCGCTGGCTTGGAGAGCGTGGCTGTGGCCCA
AGACCGGGACGTTTCTCCTGCCGCGGCGGCTCTTGCTGACGGCTCAGAGG
CGGCCACCGCGGTTTCGCAGGACGACCTGGATAGCTCCATGGTCGACGAG
ATGGACGCGTGGATTGCCGACGACCAAGACATCGGTGTGCTGCGGGCAGA
GGGAAGCGGTCCTCTTGACCCTCCGGAAGGAAAGGAAGAACAAGATGATG
CCGTCGCGCGTGCGGGTGGCGGGCACATGGCTCCCGAACCAAGAGAAGGG
CCGGGCGCGGCAGATTCGACCCCGCCATCGTCTCCGACTGCGGCGGCGGC
GGCGGCACTCGTCGACGGCAGCGAGGAGGGGATGGGGGAGACGTTGCCGA
ATCCAACCGCAGTCGTGCGAGAAGAACCGAGGGTTGTGGAGGTGGCCGCC
AGCTCCGGAGGGGGAGCAGAAATCCCGCCGCGAGTTGAGGTACCACCAGC
CATGGAAACAGCGCGGGAAATGGCCGGGGAGGAGAGAGTACGGCAGGAAG
AGGAGCGCGAAGAGCGACCGGGGACGGCATGCAGCGTGACGGACGCACCC
CCGCCCTTCGAGGCGCCCCCCGAGTATGATCCAAGTGCTATCGAGGAGGT
GCGGTTAGTAGCGGGTGCCGGTGGCGTTTCTGCCGACGAGGGATCGGCGG
GGGGGTTGCCTTTGATGACGACGCCGGTGTTGGAAGCAGGATTGGGCGGA
AACGCTGAGGAGGGCGCCGTTTTGGCGGCGGTAGGAAAGACCGTGTCGGA
AGACCCCACCCCGGTTGTAGAGAGGGTAGACGAAGCGGTCACGGAGACGT
TGGTAGCAGCACCGACAATGTCTGCAGCAGCAGCTCCACCTGCAGCAACA
GCAGCATTAGCAGCATCGCCAGCGGCACCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATCACCTACGCCGCCGGCATCACCTTCAGAACCCT
CCGGCGTGGCCGCCACGGACGGTAGCGCAGCGCTCCGCGCCGCAGAGCCG
GGCAGCCTGGAGGGTAGCTCCGAGTCCCCCCCGCCACCGGCCTTCGCATC
GGTGAGGCGTGAGGAGACCACGTTGACTCTTCCGGCGAGCCCCACCACGT
CGACGGACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACACAGCAGCATGCCCAGAGCAAGACGCAGAGGTTTTGGTACGAGA
GTCGGCGTTAGCGGCAATGGCCGACCGGGCGGCATCGCAAACACCGCCGC
AGCCTAGCGCAACCGGCGGTGGCGGCTCCGGCAGAGAGAAAGCTACAGCG
GCGAAGGCGGCGGCGGCATCGGCGAGGGCGGCGGCTCTCTTGGCGTCCGC
AGAGGCGGCATCGGCAGCGCAAGTAGCAGCGGCTGCCGTGGCGGAAGCGG
AGGCAGCGCTGGAAGCCGTCGCAGGGCCAGATGCGACGGGGGGGGTAGAA
ACAACCGCGGCTGAATCAGCGGCGCCCCTTTCGGAGGCAGTCGCCGGGGC
CGACGACGACCTGGTCATCACCGACACAACCCAGGCCGGTACCGAGAAGG
CTGGAGTGCCGAGGGGCGACGCAGTATCGACGGTGGGGGCGGCACCGGGT
TCAGCGGAGCCGCCGGCCATGCCCGACCCCGTCGTTGCGACGGCGGCGAC
ACCTGTTGAAGTAGTGGATGAACCAAGCGGGATTGGGGCGGGTGCGGGTG
CGGCCTCGCCGCCGATCGCGGAAGCAGCTACGGCGGCGGCGGCGGCAGTG
ACGGCAGCAGCATCGGAGAGTAGCTCTCTTGACGGGGCAGCGCAAGCGTC
AGGAGAACGAGGAGAATGGGAGGCTTCGGCGACACGCGATACGGTGGACG
GCGCTGACGCCGATCCTCCGGTGGCCGTACTCCTGCCCCCCGTGTTTTCG
GATGGTTCAGGAGGAGGTTCAGAGTCGGACGCGGCGGCGGCGGCGGCGGT
GTCAGCGGCGGCGGTAGAACCGGCCGGCGCGACGATCTTGAGCGGCAGCG
TGACCGCGGAGGTGTTCGCTTCGCGCAGCGGAACGGGGGCCGTTCCGTGG
CCCGGCTCAAGCGAGGACGATGAAAGCGACGGTGGCGACGAGTACGACGG
CGGCGACAACAACAACAGCGGGTGCCGGAGCTCCTCCCGAAACCAGATGT
CGGTCGAAGAGGCGGCGGCCTTCATGAACCCGGGCGGCGCCGGTACCGGC
CGCATGGGCAGCGGCCGATTCGCGTCGGGGTCCTCGTGGGGAGGGGCGTC
AGCCATCGGTCATCTGGATCGGATCCTTGGGTTGCCTACCGCGGTACCGG
CGGAGATTTCCCCCGGCGCAACGGTAGCAGCAGCCGACGGCGGCAGCGGC
GGCGCGCCTGGAGGAGGCTTTAGCAGCAGCAGCGGGTGGCTATTGCTCGG
TGGCGGCGCTCCCTCGCTCGGGGCGCCCTTCGTCGGCCCGGACGATTTCC
TTTCGCCTTCGTCTGTCGGCATGAGCGGCCTGGCTGCCCGAAGGTTCAGC
TCTAGCTCCGCCGTGATGCAGAGCTTCCCGTCCAGCGGCGGTGTCGCCGA
GGAGGACGCGGGCGGCGGCCTGGGGGTACGGCGGTCGACCGTCAACGAAA
TCACCAGCAGCCGGGGCGCCGAGCTTGGCGGCGACGAAGCAAAGGCCTCG
CAAGCGGCGGGAGTAGGGATAAAGGAGGTGGTGATTGCCGAGGGCGACGG
GGCCAGCGACGGCGATGATAGCAGCGGTGCCGGTGGTGAGGGGGGCGGTG
TTGGACCGACTGGGCGAGCCGCCGAAGAAAAGCCAGCTGCAGCCCCGACG
GAGGCGCAGGAAGAGGCGCCGACTTTGCTGCTCCGGAGAGGTGAAGAGGG
TCGGGGGGGGAAGGAGGCGGCCGTCCAGGCGGTTTCTACGGTCGTGACGG
GGCAGGGAGGGACCGGCACCGGAAGCGGCGGCAGCGGGCTCAGAAATAGC
AGGGGGGAGGGTGGCATAGTGGGTGAGGGCGTCGGCGGCGTGAAGAACTC
CGACGGCGATGGCGGTCTCGGTGCTAGCGAGAGCGCGGCGACTAGCTTCG
CCGGGGCGGAGGGAGAGGCGGGGTGGCCACCGGATGGAGTAGAGGGCAGG
GCTGCGGTTTTGGGTACGAGGGCAGCAGCCGGTGGTGGGTGCTGCGTGGT
GTCATGA
back to top