mRNA_E_fasciculatus_S2_contig9633.17644.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9633.17644.1
Unique NamemRNA_E_fasciculatus_S2_contig9633.17644.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9633.17644.1 vs.
Match: Cytochrome (P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK1_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.660e-62
Identity = 104/118 (88.14%), Postives = 107/118 (90.68%), Query Frame = 1 
Query:    1 IAERVCAKLGDGQGEPVDFVQEFGRYTHDVISLSGFGFDADSVRATKDRPSVSFEAMGRIVEAALALSVDPLTMLGWSTLSSLWPWVRETKEGSRRIERAVEGVIDKTRSEMKEDGAS 354
            IAERVCAKLGDGQGEPVDFVQEFGRYTHD I+LSGFGFDADSVRATKDRPSVSFEAMG IVEAALALSVDPL ML WSTLSSL PWVRE KE S R++R VEG IDKTRSEMKE GAS
Sbjct:  176 IAERVCAKLGDGQGEPVDFVQEFGRYTHDAIALSGFGFDADSVRATKDRPSVSFEAMGAIVEAALALSVDPLAMLAWSTLSSLLPWVREIKEKSSRLQRVVEGAIDKTRSEMKEAGAS 293
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BLAST of mRNA_E_fasciculatus_S2_contig9633.17644.1 vs.
Match: Cytochrome (P450 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC30_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.500e-20
Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 IAERVCAKLGDGQG--EPVDFVQEFGRYTHDVISLSGFGFDADSVRATKDRPSVSFEAMGRIVEAALALSVDPLTMLGWSTLSSLWPWVRETKEGSRRIERAVEGVIDKTRSEMK 339
            + ER C KLGD     E V     F R+THD+++L+ FG D  ++ AT++ P  SF+A+ RI  A ++L   P  +L W  L  + PWVRETK+ SRR+E  ++G ++  R++ K
Sbjct:  180 VGERFCGKLGDKADAREVVTSRDSFARFTHDIVALAAFGVDVGAITATEEEPCPSFDAIERITSALISLMGKPAEILKWKYLPMV-PWVRETKQHSRRLENVIQGAVNAVRADAK 293
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9633.17644.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Cytochrome1.660e-6288.14P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
Cytochrome1.500e-2040.00P450 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC30_EC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9633contigE_fasciculatus_S2_contig9633:3326..5084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score209.5
Seed ortholog evalue8.3e-52
Seed eggNOG ortholog2880.D7FPK1
Model size358
KEGG koko:K15388,ko:K21446
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.iron ion binding
EggNOG OGsCOG2124@1,KOG0158@2759
Cds size354
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842609.2627366-CDS-E_fasciculatus_S2_contig9633:3325..33951696842609.2627366-CDS-E_fasciculatus_S2_contig9633:3325..3395Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9633 3326..3395 +
1696842609.27589-CDS-E_fasciculatus_S2_contig9633:4012..41631696842609.27589-CDS-E_fasciculatus_S2_contig9633:4012..4163Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9633 4013..4163 +
1696842609.2866423-CDS-E_fasciculatus_S2_contig9633:4700..47851696842609.2866423-CDS-E_fasciculatus_S2_contig9633:4700..4785Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9633 4701..4785 +
1696842609.2985616-CDS-E_fasciculatus_S2_contig9633:5034..50821696842609.2985616-CDS-E_fasciculatus_S2_contig9633:5034..5082Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9633 5035..5082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9633.17644.1prot_E_fasciculatus_S2_contig9633.17644.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9633 3326..5082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9633.17644.1

>prot_E_fasciculatus_S2_contig9633.17644.1 ID=prot_E_fasciculatus_S2_contig9633.17644.1|Name=mRNA_E_fasciculatus_S2_contig9633.17644.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
IAERVCAKLGDGQGEPVDFVQEFGRYTHDVISLSGFGFDADSVRATKDRP
SVSFEAMGRIVEAALALSVDPLTMLGWSTLSSLWPWVRETKEGSRRIERA
VEGVIDKTRSEMKEDGAS
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mRNA from alignment at E_fasciculatus_S2_contig9633:3326..5084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9633.17644.1 ID=mRNA_E_fasciculatus_S2_contig9633.17644.1|Name=mRNA_E_fasciculatus_S2_contig9633.17644.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1759bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9633:3326..5084+ (Ectocarpus fasciculatus EfasUO2)
ATCGCCGAGCGGGTCTGCGCCAAGTTGGGGGATGGACAGGGAGAGCCCGT
GGACTTCGTCCAGGAATTTGGTGAGAAAAAATAAACGCCGCCGGGAAGTT
TTTTTACCAACAGCCCTGAAACCACGGACCATTTCGTCCCCACTGAGATT
GAACGGCGGTTCGATGCTCTTTTCTCGCACGTATGGTGGCGCGGTGGACA
GCTCGGCTCATGATTTGCCATTTTGGGTTCCAGCGGCTTGGAGCCCATAC
TGCGGCTCCTCTCACAAGACATGCTTGTTCCCGCGCTTCGACAGCCACAG
CTTGCTACTCTCTGTTCTAGGGCATCCTCGCATCTCACACGATTGGCTGC
GCACGGGGCAGCTTTGTACAGAAGCTACACGTGCGAGCAGCAGATTTCTG
CCTCCCATGACCGCTCTCCGTAAACATGCGAAGTACCAGCAGAGGGATCG
CTTCGTGTCGTCGGCACCAACCGCCCGTTATTGTATTTGTTTTCCTGCTA
ATATGCTTACGTCTTTTCTTTTTTTTGCTCTCTTTTTCTTGTTCGTTTGA
GTTTACACAAGAAGCCACCCATACCGAGGCAGGTGCAATCGATATTCGTC
CTTCGTTTTCGTTCTATTTAGCCCCCGTTTCCACCCCCGTTTCCATCTTG
CTTCCTCGGTTTGTTTCCCGGCTATTGTTTTTGGCAGGACGCTACACTCA
CGACGTGATCTCCCTCTCAGGCTTCGGCTTCGACGCCGATAGCGTGCGGG
CTACCAAGGATCGCCCCAGCGTGTCGTTCGAAGCCATGGGCAGAATCGTG
GAGGCAGCCTTGGCTTTATCAGTGGATCCGCTGACAATGTGAGTGCATGT
TCTGGGGAATACTGAGTGCAAGTTATGTTTCTCAGGGCAGCTGTGATGAG
GTCGTCAGCCAGTGCCTCCACGTCGGCGTGGCCCGAGTTGGTGAGTTTCG
AGGGATAGCATTTTTGCGTGCCGTTACCCTTTGCTTTGGGATTGATACAA
TGTCGACCCCGTTCTTCGCTCACGGGTAGTTATTCATTCGTGTTTGCTCA
TTCCTTCTGTGGTTCACTCCTTCTCATTCACTATTAGTTTGTTCACATTT
TGGGTTCACTCGTCTATATTCACTCTTGCAATCGTTTATATTCACTACCA
TGTTGATCGCTCGGCATAAGCCACACGTTTTCGATCACTCGTTTGTTTCA
CTTGTTTTGGGCCACGTTTTTTTCGAATTGTTTTTTCACTGCCCGAATCG
GGGTTTCATGTTTTGGACGCTCTCTTGGTGGGATCCGTAGTCCATATGGG
AATCCGTCTTTTCGTCAGAGATGGCTATGACTGCTGTGCCATGGTGACGA
CCTGCTTCGCCGTAATGCCGGGCAGGTTGGGGTGGTCGACTCTGTCGTCA
TTGTGGCCTTGGGTCCGAGAGACAAAGGAGGGGTCTAGGAGGATCGAACG
CGCAGTTGAGGTGAGAGCGAAGATCGTTCCGAAGAATGGTAGACAATGGT
TCTTAGGGGACGCCGCAGGCCTTATTTCGCTTGGAAGGTTTCTTCTGCCG
TACATCGACAGGTAGCCTTCGGTGATCTGTCTCCCTACCAGCACATTTCT
CTCCTGCTTATTCTTTCGTCTTGGATAGCATGTACAGCCGTTTCAGTCAA
TACACCCAAGCCAGAGGTCTCTCACCACCATACTGTTTCTTCTCACCGTT
GGATCGAAGGGGGTCATTGATAAAACCCGGAGCGAGATGAAAGAAGACGG
AGCTAGCCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9633:3326..5084+

>mRNA_E_fasciculatus_S2_contig9633.17644.1 ID=mRNA_E_fasciculatus_S2_contig9633.17644.1|Name=mRNA_E_fasciculatus_S2_contig9633.17644.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9633:3326..5084+ (Ectocarpus fasciculatus EfasUO2)
ATCGCCGAGCGGGTCTGCGCCAAGTTGGGGGATGGACAGGGAGAGCCCGT
GGACTTCGTCCAGGAATTTGGACGCTACACTCACGACGTGATCTCCCTCT
CAGGCTTCGGCTTCGACGCCGATAGCGTGCGGGCTACCAAGGATCGCCCC
AGCGTGTCGTTCGAAGCCATGGGCAGAATCGTGGAGGCAGCCTTGGCTTT
ATCAGTGGATCCGCTGACAATGTTGGGGTGGTCGACTCTGTCGTCATTGT
GGCCTTGGGTCCGAGAGACAAAGGAGGGGTCTAGGAGGATCGAACGCGCA
GTTGAGGGGGTCATTGATAAAACCCGGAGCGAGATGAAAGAAGACGGAGC
TAGC
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