mRNA_E_fasciculatus_S2_contig963.17640.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig963.17640.1
Unique NamemRNA_E_fasciculatus_S2_contig963.17640.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig963.17640.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig963contigE_fasciculatus_S2_contig963:22687..23222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size536
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.9807744-UTR-E_fasciculatus_S2_contig963:22686..229161696842608.9807744-UTR-E_fasciculatus_S2_contig963:22686..22916Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig963 22687..22916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.992121-CDS-E_fasciculatus_S2_contig963:22916..232221696842608.992121-CDS-E_fasciculatus_S2_contig963:22916..23222Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig963 22917..23222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig963.17640.1prot_E_fasciculatus_S2_contig963.17640.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig963 22917..23222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig963.17640.1

>prot_E_fasciculatus_S2_contig963.17640.1 ID=prot_E_fasciculatus_S2_contig963.17640.1|Name=mRNA_E_fasciculatus_S2_contig963.17640.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=102bp
MRTTAMGTRRRKDSVRTIGCSDHKEHNRPTCGLRSKSDGRDIAITKITQQ
QGLPGTNTNIECLRIDTWREAGIHAWCRTLRGFRPYTVRVPVCNFPYTSR
GP
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mRNA from alignment at E_fasciculatus_S2_contig963:22687..23222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig963.17640.1 ID=mRNA_E_fasciculatus_S2_contig963.17640.1|Name=mRNA_E_fasciculatus_S2_contig963.17640.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=536bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig963:22687..23222+ (Ectocarpus fasciculatus EfasUO2)
TCTCATTCAGAAAACTCAACGAGTGTTGCATACGTTGTTCCCTCGAGATC
CGGTATGTGCTGCCGAGCGGCCTTAGACCTCACGATGGTGCTGGGAATCA
GGCCCAATATAGTGGCGCGGTTCAAGGTTATTGGGGATTGGTCCTGCGGC
CACGACGAGCGGTAGTGTCACCTCCTTGTACGCGTCAGCACGGAACACGA
ACAATAGATATATACATGTCCTAGGAGGACATGCGCACTACCGCTATGGG
AACACGTCGGAGAAAGGACAGTGTCCGAACGATTGGTTGCAGCGACCACA
AAGAACACAACAGGCCAACGTGCGGACTGAGAAGCAAAAGCGACGGCAGA
GACATCGCCATCACCAAAATCACCCAACAACAAGGCCTTCCTGGGACTAA
CACAAATATCGAATGCCTGCGAATCGATACGTGGAGGGAGGCAGGTATAC
ACGCCTGGTGCCGGACACTTCGAGGTTTTCGTCCCTACACTGTCCGTGTC
CCAGTTTGCAACTTTCCGTATACCAGCAGGGGCCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig963:22687..23222+

>mRNA_E_fasciculatus_S2_contig963.17640.1 ID=mRNA_E_fasciculatus_S2_contig963.17640.1|Name=mRNA_E_fasciculatus_S2_contig963.17640.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig963:22687..23222+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCACTACCGCTATGGGAACACGTCGGAGAAAGGACAGTGTCCGAAC
GATTGGTTGCAGCGACCACAAAGAACACAACAGGCCAACGTGCGGACTGA
GAAGCAAAAGCGACGGCAGAGACATCGCCATCACCAAAATCACCCAACAA
CAAGGCCTTCCTGGGACTAACACAAATATCGAATGCCTGCGAATCGATAC
GTGGAGGGAGGCAGGTATACACGCCTGGTGCCGGACACTTCGAGGTTTTC
GTCCCTACACTGTCCGTGTCCCAGTTTGCAACTTTCCGTATACCAGCAGG
GGCCCG
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