mRNA_E_fasciculatus_S2_contig9616.17629.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9616.17629.1
Unique NamemRNA_E_fasciculatus_S2_contig9616.17629.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9616.17629.1 vs.
Match: Condensin (complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 2.910e-47
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 IVNDDYAFYDTGALAKAAATSSNNNWAGASHWKFVGVKKKRPTRNKRGQGDGGMGADGEPMVDEEGNELDTGGGVGGRKARGKRRPPAIDFDS 279
            IVNDDYAFYDTGALA AAATSSNN WAGASHWKFVGVKKKRP RNKRGQG GGMG DGEPMVDE+GNELD+G  VGGRKARGKRRPPAIDFD+
Sbjct:  411 IVNDDYAFYDTGALAAAAATSSNNTWAGASHWKFVGVKKKRPARNKRGQGGGGMGPDGEPMVDEDGNELDSGDAVGGRKARGKRRPPAIDFDA 503
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BLAST of mRNA_E_fasciculatus_S2_contig9616.17629.1 vs.
Match: Condensin (complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.670e-13
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  160 MGADGEPMVDEEGNELDTGGGVGGRKARGKRRPPAIDFDS 279
            MG DGEP+VDE+GNELD GG VGGRKARGKRRPPAIDFD+
Sbjct:    1 MGPDGEPIVDEDGNELDAGGAVGGRKARGKRRPPAIDFDA 40
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9616.17629.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Condensin2.910e-4789.25complex subunit 2 n=1 Tax=Ectocarpus siliculosus T... [more]
Condensin4.670e-1385.00complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9616contigE_fasciculatus_S2_contig9616:4045..5006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score173.3
Seed ortholog evalue5.2e-41
Seed eggNOG ortholog2880.D8LD70
Preferred nameBRN1
Model size279
KEGG koko:K06676
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001671,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0008047,GO:0008150,GO:0008608,GO:0009987,GO:0010911,GO:0010912,GO:0016043,GO:0019899,GO:0022402,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0033553,GO:0034506,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044815,GO:0048285,GO:0050000,GO:0050790,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0061638,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0071103,GO:0071840,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1903047,GO:2000371,GO:2000373
Exons2
EggNOG free text desc.DNA topoisomerase (ATP-hydrolyzing) activator activity
EggNOG OGsCOG5229@1,KOG2328@2759
Cds size279
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.1447167-CDS-E_fasciculatus_S2_contig9616:4044..41641696842608.1447167-CDS-E_fasciculatus_S2_contig9616:4044..4164Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9616 4045..4164 +
1696842608.1592555-CDS-E_fasciculatus_S2_contig9616:4847..50061696842608.1592555-CDS-E_fasciculatus_S2_contig9616:4847..5006Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9616 4848..5006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9616.17629.1prot_E_fasciculatus_S2_contig9616.17629.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9616 4045..5006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9616.17629.1

>prot_E_fasciculatus_S2_contig9616.17629.1 ID=prot_E_fasciculatus_S2_contig9616.17629.1|Name=mRNA_E_fasciculatus_S2_contig9616.17629.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
IVNDDYAFYDTGALAKAAATSSNNNWAGASHWKFVGVKKKRPTRNKRGQG
DGGMGADGEPMVDEEGNELDTGGGVGGRKARGKRRPPAIDFDS
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mRNA from alignment at E_fasciculatus_S2_contig9616:4045..5006+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9616.17629.1 ID=mRNA_E_fasciculatus_S2_contig9616.17629.1|Name=mRNA_E_fasciculatus_S2_contig9616.17629.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=962bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9616:4045..5006+ (Ectocarpus fasciculatus EfasUO2)
ATTGTGAACGACGACTACGCCTTCTACGACACCGGCGCCCTCGCAAAGGC
GGCGGCCACGTCCAGCAACAACAACTGGGCCGGCGCCTCCCACTGGAAGT
TCGTCGGCGTTAAGAAGAAGGTGGGGTCGACTTTCGGTTTCGGGACGTTA
TTGTGTTTGTTTTTAGACTGCCTTGCGGGAGATTAAGTTTGTGAGGGATT
AGAACAGGCAAGGGGGGTACGCAGACCCTATCCCTAACCCTTACCCTAGC
ATAATTTCCCCGATTGCATGCTTTATCCAACATGTTTACCTAAAAGAAAC
ACACCCTGCGAGAGCTACATTGTTATTTTTTTTAACTTTTGTGATGCATG
TGCCGAGTCGGTGCGGCTTCTTGGGACCAATGTATTGCTGTTTCTAAGCC
AGCAGAAAGGCTACACCCGCACCTCACTTTTGCTGGCGGGTGGGAGCTCA
TTAACGTGTTACACGCGGGTCAGATTTTGAGGTTTGGTTCGCGGTTAATG
GCGCAGCGAAGGCACACCATCTGATGACCGAGCGAGAACTGAATTGTGAT
GGACCTCCCACAACCACTCAACAGCATTGCTACATAGGTTCTCTTGTTTT
TTTGGAGCTGCGGCCGATGTGCGATGATGGGGAGAGTGAGAGACAGAGGC
GCGTACAGGGTCATGAAGGTCATATCACGTACGTATTCGGGAGTATTTCG
CTACACAGAAGGCCGTAGGCTCGTCTCCTACTTTCTTGAAAAGGCTATCA
TAGCTCTCGTGCTTACTCTAAAAAAGAAAAATGTCATCGTCCACCTGTCG
CAGCGGCCGACGCGCAACAAGCGCGGGCAGGGAGATGGCGGGATGGGAGC
CGATGGGGAGCCGATGGTCGACGAGGAAGGCAATGAGCTGGACACCGGCG
GTGGCGTTGGGGGGCGCAAGGCTAGGGGAAAGCGGCGGCCACCGGCGATC
GACTTCGACTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9616:4045..5006+

>mRNA_E_fasciculatus_S2_contig9616.17629.1 ID=mRNA_E_fasciculatus_S2_contig9616.17629.1|Name=mRNA_E_fasciculatus_S2_contig9616.17629.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9616:4045..5006+ (Ectocarpus fasciculatus EfasUO2)
ATTGTGAACGACGACTACGCCTTCTACGACACCGGCGCCCTCGCAAAGGC
GGCGGCCACGTCCAGCAACAACAACTGGGCCGGCGCCTCCCACTGGAAGT
TCGTCGGCGTTAAGAAGAAGCGGCCGACGCGCAACAAGCGCGGGCAGGGA
GATGGCGGGATGGGAGCCGATGGGGAGCCGATGGTCGACGAGGAAGGCAA
TGAGCTGGACACCGGCGGTGGCGTTGGGGGGCGCAAGGCTAGGGGAAAGC
GGCGGCCACCGGCGATCGACTTCGACTCC
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