mRNA_E_fasciculatus_S2_contig961.17623.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig961.17623.1
Unique NamemRNA_E_fasciculatus_S2_contig961.17623.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig961.17623.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI)

HSP 1 Score: 683 bits (1763), Expect = 3.900e-243
Identity = 401/502 (79.88%), Postives = 417/502 (83.07%), Query Frame = 1 
Query:    1 TVAMMRMSSTYHLYKIALLVKTDDAVKDSMIVRAGEPSKALYFVVSGTVEVIQLKRKRVRNRASVNAGAGKAAGSNGNKKGGNAVSAGGGXXXXXXXXXXXXXXXXXQEGEGAAEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKSSAAVPSVTEQFCLVARTSVEMLVLRRKHFNIIEMPMLEIIKTNHAARLQWRAQRKQDAHRGRAVLRAAKRALGQAAARVGGEEDPIFQSCQKQL----NRTAAAGATGNSSQETRLSASPEEAGVTALLAQRQERGSVTKSQSSGRPTLPSEDPSFAKHXXXXXXXLGANNLAGTVVSMTLRGGRHPMGXXXXXXXXXXXDKSLAGLSVASGDSMQYSVDSGGPPF----RGIAVETAAGSLRDTRDTNSWGCMAARASAPSGELSSSEKVMTAAATTAVAHLDHHSETGRGSRTASRPPTARDISTPPEHQKRTPAGMPLEKRAARERQGSGTGIRAGPGLCRLLTWKSCLP 1482
            +VAMMRMSSTYHLYKIALLVKTDDAVKDSMI+RAGEPSKALYFVVSGTVEVIQLKRKRVRN+A +N GAGKAAGSNGNKK  N V +GGGXXXXXXXX         +EG+GAAEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKSSAA P VTEQFCLVARTSVEMLVLRR+HFNII MPMLEIIK NHAARLQWRAQRKQDAHRGRAVLRAAKRALGQAAARVGGEEDPIFQSCQKQL    +RTAA  A GNSSQ  R SA  +E   T+LLAQRQERGSVTKS SSG  TLP  +PSFAKH       LGAN+LAGTVVSMT   GR+PMG           DKSLAGLSVASGDSMQYSVDSG P      R   VE AAGSLRDTRDTNSW CMAARASAPS ELSSSEK M AAATTAV HLDH SETGRGSRT  RP TARD+ST PEHQKR  AGMPLEKRAAR RQGSGTGIRAGPGLC +LTWKSCLP
Sbjct:    5 SVAMMRMSSTYHLYKIALLVKTDDAVKDSMILRAGEPSKALYFVVSGTVEVIQLKRKRVRNQAPLNTGAGKAAGSNGNKKTCNTVVSGGGXXXXXXXXGKPEKPDIPREGDGAAEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKSSAAAPPVTEQFCLVARTSVEMLVLRRQHFNIIAMPMLEIIKANHAARLQWRAQRKQDAHRGRAVLRAAKRALGQAAARVGGEEDPIFQSCQKQLVNSQSRTAATSAAGNSSQGARPSAPADEGRNTSLLAQRQERGSVTKSHSSGWSTLPRGEPSFAKHHHHPPGDLGANDLAGTVVSMTWGAGRNPMGGEEEHQDGGGDDKSLAGLSVASGDSMQYSVDSG-PTHQYNNRNAQVEPAAGSLRDTRDTNSWACMAARASAPSWELSSSEKAMEAAATTAVTHLDHPSETGRGSRTTPRPQTARDVSTLPEHQKRKVAGMPLEKRAARGRQGSGTGIRAGPGLCLVLTWKSCLP 505
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BLAST of mRNA_E_fasciculatus_S2_contig961.17623.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.490e-17
Identity = 93/244 (38.11%), Postives = 125/244 (51.23%), Query Frame = 1 
Query:   31 YHLYKIALLVKTDDAVKDSMIVRAGEPSKALYFVVSGTVEVIQLKRKRVRNRASVNAGAGKAAGSNGNKKGGNAVSAGGGXXXXXXXXXXXXXXXXXQEGEGAAEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKSSAAVPS-------------------VTEQFCLVARTSVEMLVLRRKHFNIIEMPMLEIIKTNHAARLQWRAQRKQDAHRGRAVLRAAKRALGQAAA--RVGGEED 699
            Y +Y+IALL + ++  KD+ IVR+GE S+ L+F+ SGT EV Q K                                   XXXXXXXXXXXXXXXXX + E  A    +  RRVL +LE+GE+ GESG+L   + G                            +TE F +VART+V+ LVLR +H+ II+   LE++++ HA R  WR  RK++AHR R V+RA    L + A   R GG  D
Sbjct: 1002 YRIYRIALLARLEEYPKDTWIVRSGEASRGLFFIYSGTAEVTQSKEGEAGAXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXXXTDAEERAMHAVRGRRRVLAILEAGEHLGESGLLQAASVGGWGXXXXXXXXXXXXXXXXXXXXGKREPITESFSVVARTTVQALVLRARHYAIIDANTLELVRSAHAVRALWRRARKKEAHRARGVVRAXXXRLREQARALREGGAAD 1230
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig961.17623.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.900e-24379.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.490e-1738.11protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig961contigE_fasciculatus_S2_contig961:7713..11486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1485
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-00_010990.1
Cds size1476
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig961.17623.1prot_E_fasciculatus_S2_contig961.17623.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig961 7713..11477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842607.384386-CDS-E_fasciculatus_S2_contig961:7712..80721696842607.384386-CDS-E_fasciculatus_S2_contig961:7712..8072Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig961 7713..8072 -
1696842607.396613-CDS-E_fasciculatus_S2_contig961:8528..85531696842607.396613-CDS-E_fasciculatus_S2_contig961:8528..8553Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig961 8529..8553 -
1696842607.407031-CDS-E_fasciculatus_S2_contig961:9062..94781696842607.407031-CDS-E_fasciculatus_S2_contig961:9062..9478Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig961 9063..9478 -
1696842607.425274-CDS-E_fasciculatus_S2_contig961:9777..99091696842607.425274-CDS-E_fasciculatus_S2_contig961:9777..9909Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig961 9778..9909 -
1696842607.4395-CDS-E_fasciculatus_S2_contig961:10115..103101696842607.4395-CDS-E_fasciculatus_S2_contig961:10115..10310Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig961 10116..10310 -
1696842607.4535835-CDS-E_fasciculatus_S2_contig961:10786..109841696842607.4535835-CDS-E_fasciculatus_S2_contig961:10786..10984Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig961 10787..10984 -
1696842607.464009-CDS-E_fasciculatus_S2_contig961:11327..114771696842607.464009-CDS-E_fasciculatus_S2_contig961:11327..11477Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig961 11328..11477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842607.4794269-UTR-E_fasciculatus_S2_contig961:11477..114861696842607.4794269-UTR-E_fasciculatus_S2_contig961:11477..11486Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig961 11478..11486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig961.17623.1

>prot_E_fasciculatus_S2_contig961.17623.1 ID=prot_E_fasciculatus_S2_contig961.17623.1|Name=mRNA_E_fasciculatus_S2_contig961.17623.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=492bp
MMRMSSTYHLYKIALLVKTDDAVKDSMIVRAGEPSKALYFVVSGTVEVIQ
LKRKRVRNRASVNAGAGKAAGSNGNKKGGNAVSAGGGGGGVGGAAGKPEK
PDSPQEGEGAAEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKSSAAV
PSVTEQFCLVARTSVEMLVLRRKHFNIIEMPMLEIIKTNHAARLQWRAQR
KQDAHRGRAVLRAAKRALGQAAARVGGEEDPIFQSCQKQLNRTAAAGATG
NSSQETRLSASPEEAGVTALLAQRQERGSVTKSQSSGRPTLPSEDPSFAK
HHHHPPGGLGANNLAGTVVSMTLRGGRHPMGGDEEQQDGGGDDKSLAGLS
VASGDSMQYSVDSGGPPFRGIAVETAAGSLRDTRDTNSWGCMAARASAPS
GELSSSEKVMTAAATTAVAHLDHHSETGRGSRTASRPPTARDISTPPEHQ
KRTPAGMPLEKRAARERQGSGTGIRAGPGLCRLLTWKSCLP*
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mRNA from alignment at E_fasciculatus_S2_contig961:7713..11486-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig961.17623.1 ID=mRNA_E_fasciculatus_S2_contig961.17623.1|Name=mRNA_E_fasciculatus_S2_contig961.17623.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3774bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig961:7713..11486- (Ectocarpus fasciculatus EfasUO2)
ACCGTCGCGATGATGAGGATGAGCTCGACGTACCACCTGTACAAGATCGC
CCTGCTGGTCAAGACGGACGACGCCGTGAAGGACAGCATGATCGTGAGGG
CCGGCGAGCCTTCCAAGGCGTTATACTTCGTTGTTTCTGGAACAGTCGAA
GTAATCCAGGTATTTCGGCGCAGGCACATTGCACGGGGCGTCTTCTGTGT
AGGTTACGCTGCAAGGCCCATTGTACTGTCCTGTAGACAGCAAACAGAAT
CTGTGCCGTGACCTCCCAGGGTGAAAGAAGTATTTCTAGGCCCCTAAGGC
ATTTGAACCAGATGCAGTATCCATTTGACGATATTGTAGCGAGTGTGTCC
TCTGGGCTTTGTCCCTTGTAGTTCCAGTCCGCAGCAAGCGAGTGTAGTCT
GAATAAACGACGGGCGTGCTCGAACGTCATCCTTTTCTAACTACTCCACT
TTTTCGCGTGTATGTGGGTGGGGATACCATTTCGCGTCGCGCTCATCTCC
AGCTCAAGAGAAAGAGGGTTAGAAATCGAGCATCCGTGAACGCTGGGGCT
GGAAAGGCGGCCGGCAGTAACGGCAACAAAAAAGGAGGCAATGCTGTCTC
GGCGGGAGGGGGAGGAGGAGGCGTGGGGGGGGCAGCGGGGAAGCCCGAGA
AACCAGACAGTCCACAGGAAGGAGAGGGGGCAGCCGAATTCGTCTACAAG
GTTACCACGGGCTGTTGCGCAGTAACAGGCAACGCTGACAAGTTGTGAAT
GTCACCCGATCACGTTTGTAGTGTATTGGGACAACCTAGCCTTGCACATG
GGGGTTCCGACCGCATTCAGTTTTGGTACTCCGACCACAATGCCTCGCGT
GCAGCCAGACGAAAGATCGAAAACCGATGAGCGCTCGAACGTGACCACGT
GCATGCTATTGTGTTTCGTCGGCGCATGTCTACTCCGTGGATTGATAGAT
TCATTAGATCGTCCAAAGAATACAAAATATGTTGTGGCATCGATGCGGCT
CATCCTTTCATATCCTTTCGGACATCAGTCCTTGCTTTAATTATGTTGAA
CTCATGGTTTGTCCCAAAACAGGAGGGCGACGGTTTTGCCGTGCTCGATT
GACACGCACTAATGTGCCCGTCACCCACTATCCATGCTTTTACTTTTGTC
GAATTTGGCATCTGGGACGTTTCCAGACGGCTCGAAGAGTACTGACCGTG
TTGGAGAGCGGGGAATACTTCGGAGAGTCGGGCGTTCTCACGTACTTCAA
CGGCGGTAGCAAGTCTTCGGCCGCCGTCCCCTCCGTGACTGAGCAGTTCT
GCCTTGTGGCGCGAACCAGCGTTGAGATGCTCGTCCTTCGCCGGAAGCAC
TTCAACATCATCGAAATGCCGGTAGGTTGTTAGCGGAAAGCTGTCATCAA
CTTTAAATACACGGGGGTTCTAGTGCTCTTCATGAGGCCGTCATGTGGGC
TGCCATCGTTTTCCAATCTAGCAGACAATTCCCGTAGTATGGTCCTGTTA
GTTGCAGGCGGATACGTGACCATGGGCGCCACCCTTCAACACTGTTGTTA
GCGCTCCTCTGGCACGCCACAATGCAGATGCTGGAGATTATCAAAACAAA
TCACGCCGCCCGCCTCCAATGGAGGGCCCAGCGAAAGCAGGACGCGCACC
GGGGGAGAGCGGTCCTGAGGGCGGCAAAGAGGGCGCTGGGCCAAGCTGCC
GCCAGGGTGGTGAGATGGAAAAATTGTCTTGGCCGGTACAAATAATGTTG
AACGGCATACAGAGCTCACTGTAGGAAGATTGGCGACAAGACCTGCAACT
GTGGCTCGCGATAGAGGTAGAGATATGTCGTGTTTGTTTGCGGGAGGAAA
AAGAGCGTTGGACCCGCAGCGTGGAAGATGCCAATAGGCATGTTGTTTTG
TTCTCCAAAACATAGCCTGCCGGACTTTCCCAAGACCCATAGATATGGAG
TTGATTAAACGCCCCTCGCCTTCCCATCTGCTTAAAAAAATCCTCCTCTT
CATCAAAGGGTGGTGAAGAAGACCCGATCTTCCAGTCGTGTCAAAAACAG
CTAAACCGGACTGCTGCCGCTGGTGCTACTGGCAATTCCTCACAAGAAAC
TCGGCTAAGTGCTTCTCCAGAGGAAGCCGGCGTCACTGCGCTGCTAGCGC
AAAGGCAAGAACGCGGTAGTGTGACGAAATCACAGTCATCGGGCAGGCCC
ACCTTGCCAAGTGAAGATCCAAGTTTCGCGAAACATCATCATCACCCTCC
AGGAGGACTTGGGGCAAACAATCTCGCAGGCACGGTGGTTTCAATGACTT
TGAGGGGCGGCCGGCACCCAATGGGCGGGGATGAAGAGCAGCAGGACGGG
GGGGGTGATGACAAATCACTCGCGGGGCTGAGCGTTGCATCTGGGGATAG
CATGCAGTACAGCGTGGACTCTGGGTGAGGATTTCGTCGATTGATTGGCA
TGTGCTGTACGCGGGTAGTACAGAATATTTCCATTATATTCATTTTCAAT
CAAACTTGAGTGTTCACCGTAAGCTGAAAGTGCATGACGTCCAATGTTCC
ATCAGGTTGATATCCGACGTTCCCTCAGTTTATGGTCATGAATAATCGTT
GGGAATCATAAACCGTACGAGTACCGCCGATATTTCCATCTCGTGAATAA
TGCCTTGCAACAAATGAACTAGGTGGCTCCCAACTGTTACGGGAATGGGG
AACAGCTCTCCGCAAGGCGGCGATGGTGCTGGCATTCATGCAGGATCCCA
AGGCGTCGATGATAACCGCGACGAACAACAACCGCAGCAAGGAGACCGGC
CTCAAGGCGATCAACCTTACGGTTTGAACTCGGGTGTCGAGAATGCCAAG
CCTTCCGGAGCTCTGACGGGTTCTGTGTCCCTTCCAAATCTCAGGTTACC
CGCGGGTATGGGGGATGAGAGTGCCGCCGGGAGAGGGCCGCCTTTCCGGG
GCATTGCGGTAAAAGGAGCGGGTGAGAACATTCACATTTCCAAAATGTTG
TGTTGCTTCTTCCCCTACAAGGCAAGGGGCGGTGCGATCAGCGTTCTTCA
CGCCCGTAAAAGAAGGTTTCCATGGAATAATCACCGCACCGATGGACAAC
CCGCGCCATATTTCCGTACATGAAACTGACTGAACGTTACCTACATTACT
CTCATTCATGTACTCTTCGACAGAGCGAAAACTCGAGTGAAGCTGCCTAC
CCGATTCTCTCCCACCGCCTGTCCCGAATACCCACGAAAACCACAGACAA
CGCCTATGCGTATGCCTTTTGCATCACACGACGCCCCTAACCTACGTTTC
TTCAATCAACGAACGCTGGTGGCACTGCATCAAACAAATTCGTCGAACCG
AATCCGCAAATCCGTGGAACGCAACACATGCATAACGCGCATCACAACAA
CCACAAACGCCCAGGTGGAAACCGCCGCGGGAAGCCTGCGCGATACGCGG
GACACAAACAGCTGGGGCTGCATGGCAGCAAGAGCTTCGGCGCCTTCTGG
GGAGCTATCGAGCAGCGAGAAGGTGATGACAGCAGCAGCAACCACGGCGG
TTGCCCACCTCGACCACCACTCCGAAACAGGAAGGGGCTCAAGAACGGCG
TCGAGGCCTCCGACAGCAAGAGACATTTCCACGCCGCCCGAGCACCAGAA
ACGCACACCCGCGGGCATGCCACTCGAAAAGCGGGCGGCGCGCGAAAGGC
AAGGGTCGGGGACGGGGATCAGGGCGGGGCCAGGCCTGTGTCGCCTTCTG
ACGTGGAAGTCGTGCCTGCCGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig961:7713..11486-

>mRNA_E_fasciculatus_S2_contig961.17623.1 ID=mRNA_E_fasciculatus_S2_contig961.17623.1|Name=mRNA_E_fasciculatus_S2_contig961.17623.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1476bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig961:7713..11486- (Ectocarpus fasciculatus EfasUO2)
ATGATGAGGATGAGCTCGACGTACCACCTGTACAAGATCGCCCTGCTGGT
CAAGACGGACGACGCCGTGAAGGACAGCATGATCGTGAGGGCCGGCGAGC
CTTCCAAGGCGTTATACTTCGTTGTTTCTGGAACAGTCGAAGTAATCCAG
CTCAAGAGAAAGAGGGTTAGAAATCGAGCATCCGTGAACGCTGGGGCTGG
AAAGGCGGCCGGCAGTAACGGCAACAAAAAAGGAGGCAATGCTGTCTCGG
CGGGAGGGGGAGGAGGAGGCGTGGGGGGGGCAGCGGGGAAGCCCGAGAAA
CCAGACAGTCCACAGGAAGGAGAGGGGGCAGCCGAATTCGTCTACAAGAC
GGCTCGAAGAGTACTGACCGTGTTGGAGAGCGGGGAATACTTCGGAGAGT
CGGGCGTTCTCACGTACTTCAACGGCGGTAGCAAGTCTTCGGCCGCCGTC
CCCTCCGTGACTGAGCAGTTCTGCCTTGTGGCGCGAACCAGCGTTGAGAT
GCTCGTCCTTCGCCGGAAGCACTTCAACATCATCGAAATGCCGATGCTGG
AGATTATCAAAACAAATCACGCCGCCCGCCTCCAATGGAGGGCCCAGCGA
AAGCAGGACGCGCACCGGGGGAGAGCGGTCCTGAGGGCGGCAAAGAGGGC
GCTGGGCCAAGCTGCCGCCAGGGTGGGTGGTGAAGAAGACCCGATCTTCC
AGTCGTGTCAAAAACAGCTAAACCGGACTGCTGCCGCTGGTGCTACTGGC
AATTCCTCACAAGAAACTCGGCTAAGTGCTTCTCCAGAGGAAGCCGGCGT
CACTGCGCTGCTAGCGCAAAGGCAAGAACGCGGTAGTGTGACGAAATCAC
AGTCATCGGGCAGGCCCACCTTGCCAAGTGAAGATCCAAGTTTCGCGAAA
CATCATCATCACCCTCCAGGAGGACTTGGGGCAAACAATCTCGCAGGCAC
GGTGGTTTCAATGACTTTGAGGGGCGGCCGGCACCCAATGGGCGGGGATG
AAGAGCAGCAGGACGGGGGGGGTGATGACAAATCACTCGCGGGGCTGAGC
GTTGCATCTGGGGATAGCATGCAGTACAGCGTGGACTCTGGAGGGCCGCC
TTTCCGGGGCATTGCGGTGGAAACCGCCGCGGGAAGCCTGCGCGATACGC
GGGACACAAACAGCTGGGGCTGCATGGCAGCAAGAGCTTCGGCGCCTTCT
GGGGAGCTATCGAGCAGCGAGAAGGTGATGACAGCAGCAGCAACCACGGC
GGTTGCCCACCTCGACCACCACTCCGAAACAGGAAGGGGCTCAAGAACGG
CGTCGAGGCCTCCGACAGCAAGAGACATTTCCACGCCGCCCGAGCACCAG
AAACGCACACCCGCGGGCATGCCACTCGAAAAGCGGGCGGCGCGCGAAAG
GCAAGGGTCGGGGACGGGGATCAGGGCGGGGCCAGGCCTGTGTCGCCTTC
TGACGTGGAAGTCGTGCCTGCCGTGA
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