mRNA_E_fasciculatus_S2_contig9601.17620.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9601.17620.1
Unique NamemRNA_E_fasciculatus_S2_contig9601.17620.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: Endo/exonuclease/phosphatase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F0_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 6.230e-91
Identity = 169/189 (89.42%), Postives = 172/189 (91.01%), Query Frame = 1 
Query:    1 RCSYEDTLGPGADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQLLSSYPDEPXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKEGEDTAVAADDEDADIENTRLSTACQLLGLSEGFELDAEELQLLLDSSDDDFDFLVPTILDGSSTGLEGAQQSGLGGGGASGDACGSTLE 567
            RCSYED LGPGAD SRWITHLNHRGEE+GVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQLLSSYPDE           XXXXXXXXXXXXXXXX TG+EG DTAVA D+EDADIENTRLSTACQLLGLSEGFELDAEELQLLLDSSDDDFDFLVPTILDGSSTGLEGAQQSGLGGG ASGDACGSTLE
Sbjct:  313 RCSYEDMLGPGADTSRWITHLNHRGEEVGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQLLSSYPDE---RPEETRSSXXXXXXXXXXXXXXXXTTGREGADTAVA-DEEDADIENTRLSTACQLLGLSEGFELDAEELQLLLDSSDDDFDFLVPTILDGSSTGLEGAQQSGLGGGDASGDACGSTLE 497
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: Carbon (catabolite repressor protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H3_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 3.030e-90
Identity = 175/193 (90.67%), Postives = 178/193 (92.23%), Query Frame = 1 
Query:    1 RCSYEDTLGPGADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQLLSSYPDEPXXXXXXXXXXXXXXXXXXXXXXXXXXXT----GKEGEDTAVAADDEDADIENTRLSTACQLLGLSEGFELDAEELQLLLDSSDDDFDFLVPTILDGSSTGLEGAQQSGLGGGGASGDACGSTLE 567
            RCSYE TLGPGAD SRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQLLSSYPDEP    XXXXXXXXXXXXXXXXXXXXXXX     G+EG DT VA D+EDA+IENTRLSTACQLLGLSEGFELDAEELQLLLDSSDDDFDFLVPTILDGSSTGLEGAQQSGLG GGASGDACGSTLE
Sbjct:  260 RCSYEVTLGPGADISRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQLLSSYPDEPPEQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGADTTVA-DEEDANIENTRLSTACQLLGLSEGFELDAEELQLLLDSSDDDFDFLVPTILDGSSTGLEGAQQSGLGAGGASGDACGSTLE 451
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TPH9_HEMAN)

HSP 1 Score: 63.5 bits (153), Expect = 2.150e-8
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   49 WITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQLLSS 192
            W+TH NH GE L VDY+W +NP  R  P++ AW  +V++ST+Q+++++
Sbjct:  301 WVTHRNHLGEMLCVDYVWLQNPSERRGPIDEAWRDMVFRSTRQRVMAA 348
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: uncharacterized (calcium-binding protein At1g02270-like isoform X1 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5Y3W9_DURZI)

HSP 1 Score: 58.9 bits (141), Expect = 8.040e-7
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   34 ADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQL 183
            AD  +W++HLNHRG   GVD+IW RNP+   +P++ +W    +   K QL
Sbjct:  269 ADAHKWVSHLNHRGNICGVDFIWLRNPNKSQKPLKISWAEAAFGIIKYQL 318
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: uncharacterized (calcium-binding protein At1g02270-like isoform X1 n=13 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IFR0_CUCMA)

HSP 1 Score: 55.8 bits (133), Expect = 8.390e-6
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   37 DFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQL 183
            D  +W++HLNHRG   GVD+IW RNP+   +P++ ++   V+   K QL
Sbjct:  235 DAHKWVSHLNHRGNICGVDFIWLRNPNMSRKPLKTSFAEAVFGIIKNQL 283
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: Endonuclease/exonuclease/phosphatase (n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3JJV4_COCAP)

HSP 1 Score: 55.8 bits (133), Expect = 8.660e-6
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   34 ADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQL 183
            AD  +W++HLNHRG   GVD+IW  NP+   + ++ +W   V+   K QL
Sbjct:  254 ADAHKWVSHLNHRGNVCGVDFIWLLNPNKYRKLLQTSWSEAVFGMFKNQL 303
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: Hypothetical (protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HTS6_9EUGL)

HSP 1 Score: 55.5 bits (132), Expect = 1.160e-5
Identity = 21/62 (33.87%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:    7 SYEDTLGPGADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQLLSS 192
            +Y+D  G   D + W++H+NH G+ +GVDYIW  NP  +   +   W   V+   + +LL +
Sbjct:  208 TYDDFRGCPPDAAGWVSHMNHHGQAVGVDYIWLLNPSAQSFCLTSDWRKAVFAMIEAKLLEA 269
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: uncharacterized (calcium-binding protein At1g02270 isoform X2 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6J0PGD3_ELAGV)

HSP 1 Score: 55.5 bits (132), Expect = 1.160e-5
Identity = 21/50 (42.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   34 ADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQL 183
            AD  +W++HLNHRG   GVD+IW  NP+   +P+  +W   V+   K  L
Sbjct:  314 ADAHKWVSHLNHRGNICGVDFIWLLNPNKYRKPLRTSWNEAVFGIIKYLL 363
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Gossypium davidsonii TaxID=34287 RepID=A0A7J8SWK5_GOSDV)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-5
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   34 ADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQL 183
            AD  +W++HLNHRG   GVD+IW  NP+   + ++ +W   V+   K QL
Sbjct:  131 ADAHKWVSHLNHRGNICGVDFIWLLNPNSYRKLLKTSWTEAVFGMFKNQL 180
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Match: uncharacterized (calcium-binding protein At1g02270-like isoform X4 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AD88_DURZI)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-5
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   34 ADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWESIVYQSTKQQL 183
            AD  +W++HLNHRG   GVD+IW  NP+   + ++ +W   V+   K QL
Sbjct:  254 ADAHKWVSHLNHRGNVCGVDFIWLLNPNRYRKLLKTSWSEAVFGMFKNQL 303
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9601.17620.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Endo/exonuclease/phosphatase6.230e-9189.42domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Carbon3.030e-9090.67catabolite repressor protein, putative n=1 Tax=Ect... [more]
Hypothetical2.150e-845.83protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
uncharacterized8.040e-744.00calcium-binding protein At1g02270-like isoform X1 ... [more]
uncharacterized8.390e-642.86calcium-binding protein At1g02270-like isoform X1 ... [more]
Endonuclease/exonuclease/phosphatase8.660e-642.00n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3JJV4_COC... [more]
Hypothetical1.160e-533.87protein n=1 Tax=Eutreptiella gymnastica TaxID=7302... [more]
uncharacterized1.160e-542.00calcium-binding protein At1g02270 isoform X2 n=3 T... [more]
EF-hand1.300e-542.00domain-containing protein n=1 Tax=Gossypium davids... [more]
uncharacterized1.390e-542.00calcium-binding protein At1g02270-like isoform X4 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9601contigE_fasciculatus_S2_contig9601:3872..5760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score287.3
Seed ortholog evalue5.2e-75
Seed eggNOG ortholog2880.D7G0H3
Model size585
KEGG koko:K19612,ko:K21777
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896
Exons3
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG2338@2759
EC3.1.13.4
Cds size585
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842607.1278765-CDS-E_fasciculatus_S2_contig9601:3871..40361696842607.1278765-CDS-E_fasciculatus_S2_contig9601:3871..4036Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9601 3872..4036 +
1696842607.1393824-CDS-E_fasciculatus_S2_contig9601:4551..47951696842607.1393824-CDS-E_fasciculatus_S2_contig9601:4551..4795Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9601 4552..4795 +
1696842607.1491318-CDS-E_fasciculatus_S2_contig9601:5584..57601696842607.1491318-CDS-E_fasciculatus_S2_contig9601:5584..5760Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9601 5585..5760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9601.17620.1prot_E_fasciculatus_S2_contig9601.17620.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9601 3872..5760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9601.17620.1

>prot_E_fasciculatus_S2_contig9601.17620.1 ID=prot_E_fasciculatus_S2_contig9601.17620.1|Name=mRNA_E_fasciculatus_S2_contig9601.17620.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=195bp
RCSYEDTLGPGADFSRWITHLNHRGEELGVDYIWFRNPDPRLEPMEPAWE
SIVYQSTKQQLLSSYPDEPPEQARSSGAASAAAVAAAAAAAAVAAATGKE
GEDTAVAADDEDADIENTRLSTACQLLGLSEGFELDAEELQLLLDSSDDD
FDFLVPTILDGSSTGLEGAQQSGLGGGGASGDACGSTLEVGSGF*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9601:3872..5760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9601.17620.1 ID=mRNA_E_fasciculatus_S2_contig9601.17620.1|Name=mRNA_E_fasciculatus_S2_contig9601.17620.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1889bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9601:3872..5760+ (Ectocarpus fasciculatus EfasUO2)
AGGTGCTCCTACGAGGACACGCTGGGTCCCGGGGCAGACTTTAGCCGCTG
GATCACACACCTCAATCACCGCGGGGAAGAACTGGGAGTTGACTACATCT
GGTTCCGCAACCCCGATCCCCGGTTAGAACCTATGGAGCCAGCCTGGGAA
AGCATAGTTTATCAGGTACTACTTGTAGACGTCTTTTCCTTTTCTTCCTT
TGGACACCAAAATTGCTAGGGGGGGGTGTACTCTAGCCGTGCTGCCGTGT
AGTTAGTTAGAACGTTGACGATGTATCCCTACAAGCCGGGGAGGAGCACA
CCGGGTTCTCACCGGACCAGATACTGAGGGTATTTTATTTCTTGTTGGGA
GGGATGCAAAGCTACCGTTGATTGCTTCGTAGTTTGCGGATCCTTTCGAC
TTTTTAGTGCACCTGGTGGCTTTTCTGTTTCTGCTCATTTGGTTTGTTGT
TGTGTGTTGCTGCTGACGCGCCCATGTTCTCATGATCCCCACCTTACTGC
TGTTGGCCCCCTTACGTGCTCCCCTCTCTCCTGCTCCTCGTTGCTTAAAT
TCTCTATCTTCTCCGTTGTCATGATGCCCCCCCGCCCCTCCCCCTATACC
GACACCCACCACCGGCGGCGGCAACAATTACCGCTGCCGATGCCTCCACC
ACCACCACCACCACCACCACCAACCAAAAGTCCACGAAGCAGCAGCTCCT
TTCGTCTTATCCCGACGAGCCCCCGGAACAAGCCCGGTCGTCGGGAGCGG
CATCGGCGGCGGCAGTGGCGGCCGCGGCGGCGGCGGCGGCGGTGGCGGCG
GCGACGGGAAAGGAGGGCGAAGACACTGCTGTCGCTGCTGACGACGAGGA
CGCCGACATCGAGAACACCAGGCTGTCCACGGCATGCCAGCTGCTTGGGC
TGAGCGAAGGCTTCGAGCTAGACGGTACGCAGGAAGAACGGGCTTCTCTC
TTCTCTCTTTGGGTTGTAGTATCTAGGCGAGCGGGTGTGTTGGGTTTGCA
GCGATTAAGTTATAGTGGTAGATGCGGCGAAATTCCCGTTTGTGGCGTTG
CCGTTGGTGGTGGTGGTGCGCGTTGTGCGCTGTGCGCTACACAACAAGCT
AGTCGTTGCTCTTCCTGCCGTTGTCGTTGTGGCTTGTTTCTTTTGTCAGT
GTCAGCGACACGCGTATGTACCGACACGCGGGCTCGCGCGTGATCCTCCC
GGGGCGGGCGAATCCATAGATAGATGCGGACGTTTGATGCGATACGTTCT
TGTTTTAGCGGCATGGCGAAACGTGTTCTTCGAGCCACTCCGTGGATTGG
ACAGCAGGTTAGAGGTGTATTTAATGATGTTCTGGAACAGTGTCTCCCGA
CCTTGACCTTAAGGCGTGGTGGTAAAAACAGGTGTAGAACCACTCCAGTA
GAGGAATAACAACTCAAGTAGGATAAAACCACCCTGAATACCCCAGTTAC
CCAGCTGAAGCAGCGGTTAATATTATCATCCACCACCATACATTGCACGA
TAAAGGCTCCATTCATTCATATTTTTTGACACACACTACCGCCTGCGAAG
ATACTTAGCGCAGGAACTGCGAAAGCACCCACCCATCGATTGCCGAAACA
ACCACAACCGAACCACAGCAGCGGCGTCATTAATCAAGTACACCACGGCC
CGTGCTTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTTCAACCCTGCTTC
TTCATCGAACCAGCGGAGGAGCTCCAGCTTCTCCTAGACAGCTCTGACGA
CGACTTCGACTTCCTCGTCCCCACCATTCTCGATGGGAGCTCCACCGGGC
TGGAAGGGGCGCAGCAGTCAGGGTTGGGGGGGGGGGGTGCCTCCGGCGAC
GCGTGCGGCTCCACCCTGGAGGTGGGTAGCGGCTTTTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9601:3872..5760+

>mRNA_E_fasciculatus_S2_contig9601.17620.1 ID=mRNA_E_fasciculatus_S2_contig9601.17620.1|Name=mRNA_E_fasciculatus_S2_contig9601.17620.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9601:3872..5760+ (Ectocarpus fasciculatus EfasUO2)
AGGTGCTCCTACGAGGACACGCTGGGTCCCGGGGCAGACTTTAGCCGCTG
GATCACACACCTCAATCACCGCGGGGAAGAACTGGGAGTTGACTACATCT
GGTTCCGCAACCCCGATCCCCGGTTAGAACCTATGGAGCCAGCCTGGGAA
AGCATAGTTTATCAGTCCACGAAGCAGCAGCTCCTTTCGTCTTATCCCGA
CGAGCCCCCGGAACAAGCCCGGTCGTCGGGAGCGGCATCGGCGGCGGCAG
TGGCGGCCGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGACGGGAAAGGAG
GGCGAAGACACTGCTGTCGCTGCTGACGACGAGGACGCCGACATCGAGAA
CACCAGGCTGTCCACGGCATGCCAGCTGCTTGGGCTGAGCGAAGGCTTCG
AGCTAGACGCGGAGGAGCTCCAGCTTCTCCTAGACAGCTCTGACGACGAC
TTCGACTTCCTCGTCCCCACCATTCTCGATGGGAGCTCCACCGGGCTGGA
AGGGGCGCAGCAGTCAGGGTTGGGGGGGGGGGGTGCCTCCGGCGACGCGT
GCGGCTCCACCCTGGAGGTGGGTAGCGGCTTTTGA
back to top