mRNA_E_fasciculatus_S2_contig9583.17604.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9583.17604.1
Unique NamemRNA_E_fasciculatus_S2_contig9583.17604.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9583.17604.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 4.210e-39
Identity = 142/188 (75.53%), Postives = 151/188 (80.32%), Query Frame = 3 
Query:    3 RRASKSWEVVSACLLVVVEMHHNKLLEVGVRAWRASNAALCSAASETAAAWANTPPPSS-TDRSCGSDGDDRKRGACDGVAGLSNGNGNGCREGVSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAP---AAREEACASCPEAVVAGAEAALWAGLGRAGSYRSSTWLLLA-VLAAVIFGM 551
            RRASKSWEV+ ACLLVVVEMHH+KLLE GVRAWRASNA + SAA  T A  A+TPPPSS TDRSC S G DR RG CDGV G S  +GN  REG SSS+     XXXXXXXXXXXXXXXXXXXXXXXXXXXX     AAREEA ASCPEAVV+GAEAALWAGLG+AGSYRSST LLLA VLA V+F M
Sbjct: 1040 RRASKSWEVLGACLLVVVEMHHHKLLEAGVRAWRASNAFVYSAARHTVATLASTPPPSSSTDRSCDSGGADR-RGGCDGVVGAST-HGNRYREGSSSSRPGSQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAREEAWASCPEAVVSGAEAALWAGLGKAGSYRSSTSLLLAAVLAVVMFRM 1225
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BLAST of mRNA_E_fasciculatus_S2_contig9583.17604.1 vs.
Match: Zinc (finger, FYVE domain containing 28 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR5_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.830e-8
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:   83 GGSSSLEGVERGPLLRGK*NGCRLGKHASSF-FYRPQLW*RR 205
            GGSSSLEGVERGPL  GK +GCR GKHASSF FYR +LW RR
Sbjct:  309 GGSSSLEGVERGPLFGGKAHGCRFGKHASSFVFYRRRLWYRR 350
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9583.17604.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.210e-3975.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Zinc3.830e-878.57finger, FYVE domain containing 28 n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9583contigE_fasciculatus_S2_contig9583:2909..5546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1782
Hectar predicted targeting categoryother localisation
Exons3
Cds size501
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.0819652-UTR-E_fasciculatus_S2_contig9583:2908..33751696842605.0819652-UTR-E_fasciculatus_S2_contig9583:2908..3375Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9583 2909..3375 -
1696842605.0919795-UTR-E_fasciculatus_S2_contig9583:3586..43411696842605.0919795-UTR-E_fasciculatus_S2_contig9583:3586..4341Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9583 3587..4341 -
1696842605.1192548-UTR-E_fasciculatus_S2_contig9583:5487..55461696842605.1192548-UTR-E_fasciculatus_S2_contig9583:5487..5546Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9583 5488..5546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.1012316-CDS-E_fasciculatus_S2_contig9583:4341..48181696842605.1012316-CDS-E_fasciculatus_S2_contig9583:4341..4818Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9583 4342..4818 -
1696842605.1102774-CDS-E_fasciculatus_S2_contig9583:5463..54871696842605.1102774-CDS-E_fasciculatus_S2_contig9583:5463..5487Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9583 5464..5487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9583.17604.1prot_E_fasciculatus_S2_contig9583.17604.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9583 4342..5487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9583.17604.1

>prot_E_fasciculatus_S2_contig9583.17604.1 ID=prot_E_fasciculatus_S2_contig9583.17604.1|Name=mRNA_E_fasciculatus_S2_contig9583.17604.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=167bp
MHHNKLLEVGVRAWRASNAALCSAASETAAAWANTPPPSSTDRSCGSDGD
DRKRGACDGVAGLSNGNGNGCREGVSSSQPPGSQQSSSSSSSSSAPPGRS
PAAAAAAAVAAGAPAAREEACASCPEAVVAGAEAALWAGLGRAGSYRSST
WLLLAVLAAVIFGMWH*
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mRNA from alignment at E_fasciculatus_S2_contig9583:2909..5546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9583.17604.1 ID=mRNA_E_fasciculatus_S2_contig9583.17604.1|Name=mRNA_E_fasciculatus_S2_contig9583.17604.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2638bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9583:2909..5546- (Ectocarpus fasciculatus EfasUO2)
AGCGTCGTGCATCCAAGAGCTGGGAGGTGGTGAGCGCGTGCCTCCTGGTC
GTGGTGGAGATGCACCACAACAAGCTGCTTGAGGTGGGGCAGGGAAGGGG
ACGGACGGTCTAGTTGAGGGATGGGAAACGACGAGAAGAAGCGGCGGCTT
GCTAGTTGACATGTGCACCGCGGGTCGGGTGCTCGGTTGAGTCGAAATGG
GGTGCCGCCCGCTCTAACTGATACCCCGCATACGAGGAGAAACGTGCCCT
CTCAGACGGCTTCCATCATGACTTACACCACTCCTCTTCTCCTCTTCCAC
CCGCTGTTGGTTGTGTGCATTGCCTCGGAGTCGCTGCGAGCTGCGGGCTG
CGCTCGCTGAAAACGCTACGTCTTCCATGTACCACGAGTTTTGTCCCCTT
TGCTTACTAGGTAAACCGCGCTAACCGTGTTCGTAGGTTAAACCCCACCC
TCACATACAGCACACGTGCGCTCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCGGGGGCGGTGACCAGGCGAGGGGG
GCGAGCGGCGCCCCGCCCCCCNNNNNNNNNNTTTCCCGTGTTTTTTCCCC
CTTTTCTACATAGTGGACCGCCCTGTCCTTTTTTGGCCATGAACACCCCC
CCCCCCACACCCACGCCCCGTCGCCCCCCCCCCCCCCCCCCCCCCCCCCG
CGCGCGCGCACGCGGCCTCCCTTGCCAGGTGGGAGTTCGAGCCTGGAGGG
CGTCGAACGCGGCCCTCTGCTCCGCGGCAAGTGAAACGGCTGCCGCTTGG
GCAAACACGCCTCCTCCTTCTTCTACCGACCGCAGCTGTGGTAGCGACGG
TGACGATAGGAAGAGAGGAGCTTGCGATGGGGTCGCCGGACTCTCCAACG
GCAACGGTAACGGCTGCCGAGAAGGCGTGTCCTCTTCGCAACCACCGGGA
TCGCAACAATCGTCGTCGTCGTCGTCGTCGTCGTCCGCCCCGCCTGGCCG
TTCCCCCGCTGCTGCTGCTGCTGCGGCAGTTGCGGCTGGCGCTCCCGCTG
CTAGGGAGGAGGCGTGTGCCTCTTGTCCCGAGGCAGTTGTGGCCGGGGCC
GAGGCTGCGTTGTGGGCGGGCTTGGGCAGAGCGGGATCGTATCGTTCCTC
GACGTGGCTGCTGCTGGCGGTGCTGGCGGCGGTGATATTCGGGATGTGGC
ATTAGATGTTTCATGTAGATATAACGGCTGATTGTTTCCGACTGGCGATC
TTGCACAGCCGTTTCAGGGTGTCTTTTTTTTCGTGTGTAGACGTGTTGTA
TGATAGTTTTGTGTTTTGTCTTCACATCATTAAAAATGATAAAAAGTGTT
CTCTGTGTGGTAGAAAAGAAACGAATTTGCTTCTTTCGTGTGTCTATTGT
GGGGGGCTCCGTCGAATGCAAGAGGCCGGTGGTCACCCGTGATGGTGATG
GTGGCTTGGCTTATTTTTTTTAGTGTTCCCGCCGTAGAGGTGGGCGTGTA
TGATGGACAACCGGTCGAGGAGTTGAAAACGAACGTACTTCATTCATCAG
TGTTTTTGTGACGCGCGCGGCGATAAGTTGTTTTGCGGACAAGCCCCCCT
GCTTGAACCGCCTCCGTGGCGGGAAGATGGTAGTTGATTCGGCCAAGCAA
CATGCCACACCGGAGGATGAATATTTTTTTTCCGTTTTTGTAATTCCGCC
GCAGGGGGCGTTGGCCAATCAGCGAACTGCGTGCCACAAATGTTTTTCAG
TCTCTGTTTGTGTTTCCCCTTTTTCCTGGTGTTTGCTGAATACGATCGGA
AACTCGACTGCTGCTGCATCTTCATGCACATCGATCGATGTTTGTTTATA
AAACCTACCTTTTTATTGGGTTCTTGTTGGTCGATCGAGCGGCGAGCGCC
TGTTCTCTGTAGGTTGTTTGGCGCCTGCCTGGCACATGACATGTATTGTA
GGGGGCGTGCTTGACACCGGGAGGCGATATCTCTGTCCCACCCTGCCCGC
CCCCCTCCTGCGAGGCCGCAGGCGGCGGAACGTCAGACTGCTCAGGTTTC
TTCTGTTAGGAAACGGGAGGAGNNNNNNNNNNTGTTTTTCCGTTTCTTTT
TGTTGTCTTTGGGCTTTCCCTGGATCATTTTTTTTGGGGGCTGGTGTTTG
CGCGGCGCCAGTTAGCCGTCTCCCCCCCCCCCCCCCCCCCCGGCGACAGC
GATGTTGGACCTATGGATGACCCCTTTTTTTTTCTGCGATGAAGGTGCAT
AGGGAGGGGCCCTTTTGGTGCCTGCCATGCAATTGCCAAACGGTCAACCA
GTAAACGTCTGCCTGTCTGTCCTCGCTTGTTCGTGTGACCACCAGCGTTG
ACTCGTGTATAGTATGTATCCTTTGTGTTGTGTGATGGAACACCATTGGA
TGTGAATGTGAATTGAAATAGCTTTAGCGAAGGAAGACGCCTTGCCTCGA
GGTTGTCACCCCTTGAGGATGCTAGCGTGATCTAGCGTCAAGCATAAACC
CTTGAGGCAAGTAAGACAACGCGGTGTTCTTTTCTCTGGGGCGCGCGCGA
GCGTGGGAGGGGGGGGGGAAGGTACTCTTATGCTTCGCGTGCCTTAACTT
AATTGTTGGGCCATCGACCACGCGTCCTGGAGAGACGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9583:2909..5546-

>mRNA_E_fasciculatus_S2_contig9583.17604.1 ID=mRNA_E_fasciculatus_S2_contig9583.17604.1|Name=mRNA_E_fasciculatus_S2_contig9583.17604.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=501bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9583:2909..5546- (Ectocarpus fasciculatus EfasUO2)
ATGCACCACAACAAGCTGCTTGAGGTGGGAGTTCGAGCCTGGAGGGCGTC
GAACGCGGCCCTCTGCTCCGCGGCAAGTGAAACGGCTGCCGCTTGGGCAA
ACACGCCTCCTCCTTCTTCTACCGACCGCAGCTGTGGTAGCGACGGTGAC
GATAGGAAGAGAGGAGCTTGCGATGGGGTCGCCGGACTCTCCAACGGCAA
CGGTAACGGCTGCCGAGAAGGCGTGTCCTCTTCGCAACCACCGGGATCGC
AACAATCGTCGTCGTCGTCGTCGTCGTCGTCCGCCCCGCCTGGCCGTTCC
CCCGCTGCTGCTGCTGCTGCGGCAGTTGCGGCTGGCGCTCCCGCTGCTAG
GGAGGAGGCGTGTGCCTCTTGTCCCGAGGCAGTTGTGGCCGGGGCCGAGG
CTGCGTTGTGGGCGGGCTTGGGCAGAGCGGGATCGTATCGTTCCTCGACG
TGGCTGCTGCTGGCGGTGCTGGCGGCGGTGATATTCGGGATGTGGCATTA
G
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