mRNA_E_fasciculatus_S2_contig9572.17593.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9572.17593.1
Unique NamemRNA_E_fasciculatus_S2_contig9572.17593.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9572.17593.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.490e-17
Identity = 60/80 (75.00%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:   55 PSTPPRVSPYAATRGRAKXXXXXXXXXXXXXXXXXXXXXATPTPGRRRKAGSREVSPKKAVSQRTNGSRRVSPVVKGKQG 294
            PSTPPRVSPYAA RGRAK         XXXXX   XXXXATPTPGRRRKAG+RE SPKK VSQRT G RRVSP VKG+QG
Sbjct: 2088 PSTPPRVSPYAA-RGRAKKSAAASSSGXXXXXGTPXXXXATPTPGRRRKAGAREFSPKKTVSQRTEGGRRVSPGVKGRQG 2166
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BLAST of mRNA_E_fasciculatus_S2_contig9572.17593.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.460e-15
Identity = 53/79 (67.09%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   55 PSTPPRVSPYAATRGRAKXXXXXXXXXXXXXXXXXXXXXATPTPGRRRKAGSREVSPKKAVSQRTNGSRRVSPVVKGKQ 291
            PSTPPRVSPYAA RGRAK     XXX             ATPTPGRRR A SREVSPK+AVSQ T+GSRRVSP VKG+Q
Sbjct: 2075 PSTPPRVSPYAA-RGRAKKSSAAXXXGAGSTSGTPGSSSATPTPGRRRMADSREVSPKEAVSQGTHGSRRVSPGVKGRQ 2152
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9572.17593.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.490e-1775.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.460e-1567.09protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9572contigE_fasciculatus_S2_contig9572:4814..5170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.0384588-CDS-E_fasciculatus_S2_contig9572:4815..50811696842604.0384588-CDS-E_fasciculatus_S2_contig9572:4815..5081Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9572 4816..5081 -
1696842604.0557115-CDS-E_fasciculatus_S2_contig9572:5142..51701696842604.0557115-CDS-E_fasciculatus_S2_contig9572:5142..5170Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9572 5143..5170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9572.17593.1prot_E_fasciculatus_S2_contig9572.17593.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9572 4816..5170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9572.17593.1

>prot_E_fasciculatus_S2_contig9572.17593.1 ID=prot_E_fasciculatus_S2_contig9572.17593.1|Name=mRNA_E_fasciculatus_S2_contig9572.17593.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
FVERVFTAAAAAAAGTTVPSTPPRVSPYAATRGRAKKSAASSSAGGSTSG
TPGSSSAATPTPGRRRKAGSREVSPKKAVSQRTNGSRRVSPVVKGKQG
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mRNA from alignment at E_fasciculatus_S2_contig9572:4814..5170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9572.17593.1 ID=mRNA_E_fasciculatus_S2_contig9572.17593.1|Name=mRNA_E_fasciculatus_S2_contig9572.17593.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9572:4814..5170- (Ectocarpus fasciculatus EfasUO2)
TTCGTCGAGAGGGTCTTCACCGCAGCAGGCTACTCGAGGGGCGTCCCCTG
CGTCAGCACGCAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGGGACGACGGTGCCCAGCACGCCTCCTCGAGTGAGCCCGTACGCCGC
CACCCGGGGGAGAGCTAAGAAGTCGGCGGCGTCTTCGTCTGCCGGAGGGA
GCACCTCCGGCACGCCGGGGTCCTCCTCCGCCGCCACTCCGACCCCCGGT
CGCCGAAGAAAGGCCGGCTCTCGAGAGGTATCCCCGAAGAAGGCGGTTTC
TCAGCGAACGAACGGTAGCAGGCGTGTTTCCCCCGTTGTGAAGGGAAAGC
AGGGGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9572:4814..5170-

>mRNA_E_fasciculatus_S2_contig9572.17593.1 ID=mRNA_E_fasciculatus_S2_contig9572.17593.1|Name=mRNA_E_fasciculatus_S2_contig9572.17593.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9572:4814..5170- (Ectocarpus fasciculatus EfasUO2)
TTCGTCGAGAGGGTCTTCACCGCAGCAGCAGCAGCAGCAGCAGGGACGAC
GGTGCCCAGCACGCCTCCTCGAGTGAGCCCGTACGCCGCCACCCGGGGGA
GAGCTAAGAAGTCGGCGGCGTCTTCGTCTGCCGGAGGGAGCACCTCCGGC
ACGCCGGGGTCCTCCTCCGCCGCCACTCCGACCCCCGGTCGCCGAAGAAA
GGCCGGCTCTCGAGAGGTATCCCCGAAGAAGGCGGTTTCTCAGCGAACGA
ACGGTAGCAGGCGTGTTTCCCCCGTTGTGAAGGGAAAGCAGGGG
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