mRNA_E_fasciculatus_S2_contig9551.17568.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9551.17568.1
Unique NamemRNA_E_fasciculatus_S2_contig9551.17568.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9551.17568.1 vs.
Match: Glutaminyl-tRNA (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG69_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.960e-20
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = 2 
Query:    8 MRSACGHARRRPRRLFSSVTADASLHSAPSSGLSGLSLAEASRKVQEGDVRPSELAEACIRQMER 202
            MRSACG ARRR RR FSSVTADASLHS       GLSLAEASRKVQEGDVRPSELAEACI+QMER
Sbjct:    1 MRSACGQARRRQRRFFSSVTADASLHS-------GLSLAEASRKVQEGDVRPSELAEACIKQMER 58
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9551.17568.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Glutaminyl-tRNA1.960e-2083.08synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9551contigE_fasciculatus_S2_contig9551:4092..5155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.4
Seed ortholog evalue8.2e-17
Seed eggNOG ortholog2880.D8LG69
Model size202
KEGG rclassRC00010
KEGG koko:K02433
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln)
EggNOG OGsCOG0154@1,KOG1211@2759
EC6.3.5.6,6.3.5.7
Cds size195
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842602.1012743-UTR-E_fasciculatus_S2_contig9551:4091..40981696842602.1012743-UTR-E_fasciculatus_S2_contig9551:4091..4098Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9551 4092..4098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842602.116172-CDS-E_fasciculatus_S2_contig9551:4098..42181696842602.116172-CDS-E_fasciculatus_S2_contig9551:4098..4218Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9551 4099..4218 +
1696842602.1276681-CDS-E_fasciculatus_S2_contig9551:5080..51551696842602.1276681-CDS-E_fasciculatus_S2_contig9551:5080..5155Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9551 5081..5155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9551.17568.1prot_E_fasciculatus_S2_contig9551.17568.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9551 4099..5155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9551.17568.1

>prot_E_fasciculatus_S2_contig9551.17568.1 ID=prot_E_fasciculatus_S2_contig9551.17568.1|Name=mRNA_E_fasciculatus_S2_contig9551.17568.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=65bp
MRSACGHARRRPRRLFSSVTADASLHSAPSSGLSGLSLAEASRKVQEGDV
RPSELAEACIRQMER
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mRNA from alignment at E_fasciculatus_S2_contig9551:4092..5155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9551.17568.1 ID=mRNA_E_fasciculatus_S2_contig9551.17568.1|Name=mRNA_E_fasciculatus_S2_contig9551.17568.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1064bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9551:4092..5155+ (Ectocarpus fasciculatus EfasUO2)
AAAGCTGATGAGGTCAGCTTGCGGGCACGCTCGGCGTAGACCACGCCGGT
TGTTTTCTTCAGTTACTGCCGATGCGTCGTTGCATTCAGCGCCAAGCTCT
GGGTTGTCTGGACTGTCTCTGGCTGAGGTGAGCGCACCGATGCACCGACT
CTACAAACCTGCGGGGCTACACCCATCACTGGTCACTGGTGGCTTGGTTG
GTTGCAGGCAATTGGTAGAGTCGTGGTGAATGGAAGGATTTCTGCTGTCA
AAACTCGGCAACTGCGGTTTCGCTGCTATGTTTTGTGTGTGACTCGACAT
CCATAACCTACGGTACAACCGTTTGGTAACAGCAGCAGCAGCGGAGCGGT
GTACATACACGTCGACAATGTGTAGACGACAGATGTACACGAGCAATGTA
GCGGTGTATGTTATGTACGCTGTCGACATGTAGGCTGTGTGTTCACGAAG
CACTTGAATGTATGCAACCTCGTCGTGAGTCTATGCATGCTCTTTACGCT
GTTGTTGCCATCAGTTCAAGTTCCACATATTTTTTCCATATCCTGCTGTG
CTGCACCGTCGAGGCAAAGGAGCTTTACTTGTACATACATACGTAGTACA
CGGCAGTACACAGGTTCACCACCGAAAAACATGACCAAACAATGAACCAC
ACCAGTATGTGTCCCACCCGACGCAATGCAATGGTGATACTCGTATTCGC
TGCAGTAGCCCACCCACATAACGATTGCCTAGCTAGCGCACGGCACCGGA
CCACCACTCCAGTCCAAACTTTAATGTCACTCAAAACTATCACATCATAC
ACAGCGTTTCTTCTGTAGCTGCGGCCTACGCATTGCCTACCGACATGTGT
GCACAAACGACGTGGCACGCCCAGACGAGCCCTGGCAGGTACCGGAATTC
CGTACCGCGTGGATGACCCCCGCGGGTCGAATCCGGATCACACCCCTCTC
TGATGCCCGCCACCCTCATGCACACACGGTAACAAAAAGGCTTCGAGGAA
GGTGCAAGAGGGGGATGTGCGGCCTTCCGAGCTCGCGGAGGCTTGCATCA
GGCAGATGGAACGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9551:4092..5155+

>mRNA_E_fasciculatus_S2_contig9551.17568.1 ID=mRNA_E_fasciculatus_S2_contig9551.17568.1|Name=mRNA_E_fasciculatus_S2_contig9551.17568.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=195bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9551:4092..5155+ (Ectocarpus fasciculatus EfasUO2)
ATGAGGTCAGCTTGCGGGCACGCTCGGCGTAGACCACGCCGGTTGTTTTC
TTCAGTTACTGCCGATGCGTCGTTGCATTCAGCGCCAAGCTCTGGGTTGT
CTGGACTGTCTCTGGCTGAGGCTTCGAGGAAGGTGCAAGAGGGGGATGTG
CGGCCTTCCGAGCTCGCGGAGGCTTGCATCAGGCAGATGGAACGG
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