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Homology
BLAST of mRNA_E_fasciculatus_S2_contig954.17559.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR01_ECTSI) HSP 1 Score: 161 bits (408), Expect = 2.890e-47 Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 1
Query: 529 MDNLYSDCDGVTTPDGLYFDPDNAIEGEWSDKVKTQIKIATERCGCDAANRLAPLHGMAGFGKPLSSVGLVLMMSLVTWSVA 774
MDN Y+DCDGVTTPDGLYFDPDNAIEGEWSDKVK QIKIATERCGCDAANRLAPL GMAGFG PLSSVGLVLM SLVTWS A
Sbjct: 1 MDNFYADCDGVTTPDGLYFDPDNAIEGEWSDKVKAQIKIATERCGCDAANRLAPLRGMAGFGMPLSSVGLVLMTSLVTWSTA 82
BLAST of mRNA_E_fasciculatus_S2_contig954.17559.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA51_9PHAE) HSP 1 Score: 154 bits (389), Expect = 2.120e-44 Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1
Query: 529 MDNLYSDCDGVTTPDGLYFDPDNAIEGEWSDKVKTQIKIATERCGCDAANRLAPLHGMAGFGKPLSSVGLVLMMSLVTWSVAV 777
MDNLYS CDGVTTPDGLYFDPDNAIEGEWSDK++ QIKIATERCGCDAANRLAPL GM FG PLSSVGLVL+ SLVTWS AV
Sbjct: 1 MDNLYSHCDGVTTPDGLYFDPDNAIEGEWSDKIEAQIKIATERCGCDAANRLAPLRGMVVFGTPLSSVGLVLITSLVTWSTAV 83
BLAST of mRNA_E_fasciculatus_S2_contig954.17559.1 vs.
Match: Secreted (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CNC1_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.140e-21 Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 409 SACMEVAGLVAAKTTSLGNDGACMQCDPANRVCPPGCQALMDNLYSDCDGVTTPDGLYFDPDNAIEGEWSDKVKTQIKIATERCGCDAANRLAP 690
+AC + A+ G+CM CDP + CP CQ L++ LY+DCDGV TP GL+FDP+ I G W+ ++ + +IA ERCGCDAA+ +AP
Sbjct: 34 AACSSAVAAITAQGDG-STPGSCMSCDPTFKKCPAKCQPLINTLYTDCDGVYTPPGLFFDPNATISGYWNGQIN-KTRIAVERCGCDAAHSIAP 125
BLAST of mRNA_E_fasciculatus_S2_contig954.17559.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QHE0_SAPDV) HSP 1 Score: 82.0 bits (201), Expect = 7.500e-16 Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 469 GACMQCDPANRVCPPGCQALMDNLYSDCDGVTTPDGLYFDPDNAIEGEWSDKVKTQIKIATERCGCDAA 675
G+CM CDP CP CQ L++ +YSDCDGV TP G +FDP I G W+ +V +IA ERCGC A
Sbjct: 53 GSCMSCDPTYNKCPAKCQPLINTMYSDCDGVYTPPGHFFDPAAKISGYWNGQVNVS-RIAVERCGCSRA 120
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig954.17559.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 2.890e-47 | 91.46 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Uncharacterized | 2.120e-44 | 86.75 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Secreted | 2.140e-21 | 45.74 | protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepI... | [more] |
| Uncharacterized | 7.500e-16 | 52.17 | protein n=1 Tax=Saprolegnia diclina (strain VS20) ... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 89.0 |
| Seed ortholog evalue | 3.6e-15 |
| Seed eggNOG ortholog | 36331.EPrPI00000023736 |
| Model size | 806 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| EggNOG free text desc. | function. Source PGD |
| EggNOG OGs | 1MHTN@121069,2CXBZ@1,2S4KE@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-07_002280.1 |
| Cds size | 786 |
| COG Functional cat. | S |
| Best tax level | Pythiales |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842601.2188516-UTR-E_fasciculatus_S2_contig954:2325..2345 | 1696842601.2188516-UTR-E_fasciculatus_S2_contig954:2325..2345 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig954 2326..2345 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842601.2304854-CDS-E_fasciculatus_S2_contig954:2345..2507 | 1696842601.2304854-CDS-E_fasciculatus_S2_contig954:2345..2507 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig954 2346..2507 - |
| 1696842601.2411225-CDS-E_fasciculatus_S2_contig954:3013..3136 | 1696842601.2411225-CDS-E_fasciculatus_S2_contig954:3013..3136 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig954 3014..3136 - |
| 1696842601.253938-CDS-E_fasciculatus_S2_contig954:3719..3809 | 1696842601.253938-CDS-E_fasciculatus_S2_contig954:3719..3809 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig954 3720..3809 - |
| 1696842601.268798-CDS-E_fasciculatus_S2_contig954:4165..4576 | 1696842601.268798-CDS-E_fasciculatus_S2_contig954:4165..4576 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig954 4166..4576 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig954.17559.1 >prot_E_fasciculatus_S2_contig954.17559.1 ID=prot_E_fasciculatus_S2_contig954.17559.1|Name=mRNA_E_fasciculatus_S2_contig954.17559.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=262bp
MTRQHPQECPPCGRAIGGPRRRPTIAHSSKKCRLPLRVTSLHERGWTASS
PCMCRSQQCGVDGGASSTSRLHVQGLGVRKLKSTYLGGHRPYSSLKRWRI
LPSLSTARSISVVIAVLVMTVWPANGDDLATEYLKPSACMEVAGLVAAKT
TSLGNDGACMQCDPANRVCPPGCQALMDNLYSDCDGVTTPDGLYFDPDNA
IEGEWSDKVKTQIKIATERCGCDAANRLAPLHGMAGFGKPLSSVGLVLMM
SLVTWSVAVCC* back to topmRNA from alignment at E_fasciculatus_S2_contig954:2326..4576- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig954.17559.1 ID=mRNA_E_fasciculatus_S2_contig954.17559.1|Name=mRNA_E_fasciculatus_S2_contig954.17559.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2251bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig954:2326..4576- (Ectocarpus fasciculatus EfasUO2)
ATGACCAGGCAACATCCGCAAGAATGCCCGCCGTGCGGCAGGGCCATCGG
GGGCCCCAGGAGGCGACCAACGATAGCTCACAGCAGCAAGAAATGCCGAT
TACCGCTACGCGTCACCTCGCTCCACGAACGGGGATGGACAGCTTCCAGC
CCCTGCATGTGCCGCTCACAGCAGTGTGGTGTTGATGGCGGTGCAAGTTC
TACAAGTCGCCTCCACGTACAAGGTCTTGGCGTCAGAAAGCTGAAATCTA
CATATCTGGGAGGCCACCGACCCTACTCTTCATTGAAACGGTGGCGAATA
CTGCCATCGCTGTCGACCGCAAGGAGCATTTCTGTGGTTATTGCGGTCCT
CGTCATGACCGTCTGGCCAGCTAATGGAGACGACCTTGCGACGGAGTATT
TGAAGCCTTCCGTGAGCTCCAAGGCAAGCTTCTTCGGCACGCGAGGGTAG
GGGTGAGCACCCGGCATCCTCCCTGCAAGGCGGAACCGCAGCTACTCCCG
CACAGTGAATACTCGGAGCTGGGCTATTCATGCAGCAAACAAAGAGAAAC
CAAGACGCGGTGGCTTTAATAAATATCATTGTGTCCCTAATGATCCCAAC
TGATTCCATCGCCGCCGCTAGTTTTCCCTGTCGCCATGACAGGAGCGCCG
CTTTAACCCGTGGCAAATGGTTCGATTTCGTGACAGCTAATCCTAGCTCT
GTGTCGTGCCCGTCTCGACTCTTTTGTTTTGGTCTTTGTGACTCCTGCCG
TTTGGAAACACCCTCAGGCGTGCATGGAAGTGGCAGGGCTTGTCGCGGCA
AAGACGACGTCTCTTGGGAACGACGGCGCTTGCATGCAATGCGATCCGGC
CAACAGAGTAAGCTAACAATACGAGCCCAGCAATGCTCGTTAAGGCTTCT
TCAACGTCGAGCAAAGCCTGGGGCCTGTGCCCATTTTAGAGGATTGTGCA
CTCCGCAACCTCGCAATATCGTACCTACGCACCGGTCGCAATTTGTTTCA
CATCTGTTATGCATAGTTCTCACGGACAGAGTGCCTAGGAAAACAGGATG
TACCCGTACGGGTGGGGGTATGGATGGTGATAATCGACCCAACCGGACTG
GTAGAATGCGATGAACCAAATATAAACGCACGGGCTACATTGACGGCCTG
TGGGTCGAAGAGCGCTGTCGCCTGGCCTGGTCGAGAGAAGCGCACATTGT
CACCCCTCGCTTGAACAATCGCGCGTGAATGCCTACGGGCGTCAACGACG
GCCACGAACGCTCGATAGTAGTTTCCCTCGATATGGTGGCAGGCTTGCCC
ACCTTCACGTACGCTCTAAAGTATCTCGCCTGCAACGTAATCCTGCTCGG
CGGGAGCCACCGCTCAACGTGGAGGCCAAGCAGAGCTGGTGCCCAGTTGA
GTAAGGCGATGTCGATTTCTCTTTTCGCCTATGTCGGCAGGTTTGCCCTC
CCGGATGCCAAGCTCTCATGGACAACTTGTACTCCGACTGCGACGGTGTG
ACGACGCCGGACGGGCTCTACTTTGACCCGGATAATGCCATTGAGGGAGA
ATGGTCCGACAAGGTAAGCAGCGGTCCATGTCGTCGCCTCACCATCCCAG
TAGTCGTTCGCTACCCGCAGCAGCTTGCGCACGTCAAGACAACACCGCCA
ACCTCTGATAAAGCGCCAGCATGTACACGCACGCAGCAGTCTCTGCCAGA
TGTATGGCTATGCCGTTTGACTCTTTGCTAGTTTCACCGCGGAGCCCGGC
TAATAAGCGCTGCCCTCGGCAACGTTCGTGACTTTAAGGTCTCCCTTAAT
CCGTCAACAAGACGTTACAGTTGTAATCAAGGAGAGCCAAAAGCGCCAAA
CTCTTCCTTTTCGGGACAAAGCGGGTGACGACAAGTACAGCATTGCATTA
TACTCGAGCGGTATGGTGCTCCCATGCGCCCGTCGTTCCATCAGTGGGGG
GAAAGACGTAGCACCTCGTGAAGGAGCCTGGGCGTTGCAACAGAATATGT
CATGTGCCAGCGATGTTTCGCAGAATTGGAACACCGACTATTGCCCGCGT
TACCTTGTCCACGCCACAGGTCAAGACACAGATCAAGATCGCCACGGAGA
GATGCGGCTGCGACGCCGCCAACCGGTTGGCCCCACTGCATGGCATGGCA
GGTTTTGGGAAGCCTCTGTCGTCGGTTGGGCTTGTGCTGATGATGTCCCT
CGTAACCTGGTCGGTAGCGGTTTGCTGCTAAGGCCGTCGTACGATCATCC
A back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig954:2326..4576- >mRNA_E_fasciculatus_S2_contig954.17559.1 ID=mRNA_E_fasciculatus_S2_contig954.17559.1|Name=mRNA_E_fasciculatus_S2_contig954.17559.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=786bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig954:2326..4576- (Ectocarpus fasciculatus EfasUO2)
ATGACCAGGCAACATCCGCAAGAATGCCCGCCGTGCGGCAGGGCCATCGG
GGGCCCCAGGAGGCGACCAACGATAGCTCACAGCAGCAAGAAATGCCGAT
TACCGCTACGCGTCACCTCGCTCCACGAACGGGGATGGACAGCTTCCAGC
CCCTGCATGTGCCGCTCACAGCAGTGTGGTGTTGATGGCGGTGCAAGTTC
TACAAGTCGCCTCCACGTACAAGGTCTTGGCGTCAGAAAGCTGAAATCTA
CATATCTGGGAGGCCACCGACCCTACTCTTCATTGAAACGGTGGCGAATA
CTGCCATCGCTGTCGACCGCAAGGAGCATTTCTGTGGTTATTGCGGTCCT
CGTCATGACCGTCTGGCCAGCTAATGGAGACGACCTTGCGACGGAGTATT
TGAAGCCTTCCGCGTGCATGGAAGTGGCAGGGCTTGTCGCGGCAAAGACG
ACGTCTCTTGGGAACGACGGCGCTTGCATGCAATGCGATCCGGCCAACAG
AGTTTGCCCTCCCGGATGCCAAGCTCTCATGGACAACTTGTACTCCGACT
GCGACGGTGTGACGACGCCGGACGGGCTCTACTTTGACCCGGATAATGCC
ATTGAGGGAGAATGGTCCGACAAGGTCAAGACACAGATCAAGATCGCCAC
GGAGAGATGCGGCTGCGACGCCGCCAACCGGTTGGCCCCACTGCATGGCA
TGGCAGGTTTTGGGAAGCCTCTGTCGTCGGTTGGGCTTGTGCTGATGATG
TCCCTCGTAACCTGGTCGGTAGCGGTTTGCTGCTAA back to top
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