mRNA_E_fasciculatus_S2_contig9534.17557.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9534.17557.1
Unique Name	mRNA_E_fasciculatus_S2_contig9534.17557.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.860e-61
Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            ME RQNPDD+FNQKHLLRHKAEKMGETISD YF D CVTGFT+EYKDVKMI YRDPDFNVDKM++TMRHMFLDEQSR GPKGSIAGRGFA+T TTSE P CFDC EKGHI RNC
Sbjct:  124 MEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNC 237

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BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.990e-55
Identity = 85/114 (74.56%), Postives = 94/114 (82.46%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            ME  QNPDD+FN KHLLRHK EKMGE ISDRYFKD+CVTGFT EYK+VKMI +RDP+FNV+ M++TM HM LDEQSRKG KG IAGRGF + TT SE   CF C EKGHIRRNC
Sbjct:    9 MEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNC 122

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BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP5_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.670e-49
Identity = 82/116 (70.69%), Postives = 92/116 (79.31%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDV--CVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            ME  Q PDD+ NQKHLLRHK ++MGE ISD YFKD+  CVTGFTDE KDVKM  YRDP+FNV++M++TMRHMFLDEQSRK  KG IAGR FA+ TTTSE    F C EK HIRRNC
Sbjct:    1 MEPGQKPDDYINQKHLLRHKVQQMGEKISDSYFKDIEECVTGFTDESKDVKMTVYRDPNFNVNQMQTTMRHMFLDEQSRKWSKGGIAGRDFAMVTTTSEQTSHFGCGEKRHIRRNC 116

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 9.330e-49
Identity = 75/114 (65.79%), Postives = 94/114 (82.46%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            ME  +NPDD FN+KH LR + EKMGETISDR FKD+CV GF+++YKD+KM+ +RDP F+V +M++TMR++FLDEQ RK  KG IAGRGFA+ T TS GPICF+C E GH+RRNC
Sbjct:  144 MEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS-GPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: CCHC-type (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.230e-48
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            M   +NPDD+FNQKHLLR + +KMGE ISDR FKD+CV GF+DEYKDVK+I  RDP FNV  M+STMR++FLDEQSRKG KG IAGRGF++ TT SE  IC  C E GHIRRNC
Sbjct:   79 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFSMVTTASE-IICHSCYEPGHIRRNC 191

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W5_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 8.500e-47
Identity = 73/114 (64.04%), Postives = 93/114 (81.58%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            ME  +NPDD FN++H LR + EKMGETISDR FKD+CV GF+++YKD+KM+ +RDP F+V +M++TMR++FLDEQ RK  KG IAGRGFA+ T TS GPICF+C E  H+RRNC
Sbjct:  108 MEPGENPDDFFNKEHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS-GPICFECHEPRHVRRNC 220

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.100e-46
Identity = 77/114 (67.54%), Postives = 91/114 (79.82%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            M   +NPDD+FNQK+LLR + +KMGE ISDR FKD+CV GF+DEYKDVK++ +RDP FNV  M+STMR++FLDEQSRKG KG IAGRGFA  TT S+  IC  C E GHIRRNC
Sbjct:  146 MNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFATATTASD-IICHSCYESGHIRRNC 258

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.990e-46
Identity = 74/114 (64.91%), Postives = 93/114 (81.58%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            ME  +NPDD FN+KH LR + EKMGETISDR FKD+CV GF+++YK +KM+ +RDP F+V +M++TMR++FLDEQ RK  KG IAGRGFA+ T TS GPICF+C E GH+RRNC
Sbjct:  144 MEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKFIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS-GPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 7.650e-46
Identity = 75/114 (65.79%), Postives = 94/114 (82.46%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            ME  +NPDD FN+KH LR + EKMGETISDR FKD+CV GF+++YKD+KM+ +RDP F+V +M++TMR++FLDEQ RK  KG IAGRGFA+ T TS GPICF+C E GH+RRNC
Sbjct:  144 MEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS-GPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 8.880e-46
Identity = 77/114 (67.54%), Postives = 91/114 (79.82%), Query Frame = 1

Query:    1 MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKMIAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPICFDCREKGHIRRNC 342
            M   +NPDD+FNQKHLLR + +KMGE ISDR FKD+CV GF+DEYKDVK++ +RDP FNV  M+STMR++FLDEQSRK  KG IAGRGFA+ TT S+  IC  C E GHIRRNC
Sbjct:    9 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKEWKGRIAGRGFAMATTASD-IICHSCYEPGHIRRNC 121

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9534.17557.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
CCHC-type	2.860e-61	85.96	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
CCHC-type	2.990e-55	74.56	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Uncharacterized	2.670e-49	70.69	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
CCHC-type	9.330e-49	65.79	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
CCHC-type	3.230e-48	69.30	domain-containing protein (Fragment) n=1 Tax=Ectoc...	[more]
CCHC-type	8.500e-47	64.04	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
CCHC-type	1.100e-46	67.54	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
CCHC-type	2.990e-46	64.91	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Uncharacterized	7.650e-46	65.79	protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 131...	[more]
CCHC-type	8.880e-46	67.54	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9534	contig	E_fasciculatus_S2_contig9534:2387..2728 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	0
Start	1
Model size	342
Hectar predicted targeting category	other localisation
Exons	1
Cds size	342

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842601.088173-CDS-E_fasciculatus_S2_contig9534:2386..2728	1696842601.088173-CDS-E_fasciculatus_S2_contig9534:2386..2728	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9534 2387..2728 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9534.17557.1	prot_E_fasciculatus_S2_contig9534.17557.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9534 2387..2728 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9534:2387..2728-
coding sequence from alignment at E_fasciculatus_S2_contig9534:2387..2728-

protein sequence of mRNA_E_fasciculatus_S2_contig9534.17557.1

>prot_E_fasciculatus_S2_contig9534.17557.1 ID=prot_E_fasciculatus_S2_contig9534.17557.1|Name=mRNA_E_fasciculatus_S2_contig9534.17557.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp
MEARQNPDDHFNQKHLLRHKAEKMGETISDRYFKDVCVTGFTDEYKDVKM
IAYRDPDFNVDKMRSTMRHMFLDEQSRKGPKGSIAGRGFAITTTTSEGPI
CFDCREKGHIRRNC

mRNA from alignment at E_fasciculatus_S2_contig9534:2387..2728-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9534.17557.1 ID=mRNA_E_fasciculatus_S2_contig9534.17557.1|Name=mRNA_E_fasciculatus_S2_contig9534.17557.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9534:2387..2728- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGCCAGACAGAACCCGGACGACCATTTCAATCAGAAGCACCTCCT
ACGACACAAGGCTGAGAAGATGGGGGAAACAATCTCAGATCGCTACTTCA
AGGACGTATGCGTCACCGGCTTCACCGACGAGTACAAGGACGTCAAGATG
ATCGCGTACCGCGACCCAGACTTCAACGTCGACAAGATGCGATCTACCAT
GCGTCACATGTTCCTTGACGAGCAATCTCGCAAGGGGCCGAAGGGCAGCA
TCGCTGGGCGCGGTTTCGCCATTACTACCACTACCTCAGAGGGACCGATC
TGCTTCGACTGCAGAGAGAAGGGACATATCCGAAGGAACTGC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9534:2387..2728-

>mRNA_E_fasciculatus_S2_contig9534.17557.1 ID=mRNA_E_fasciculatus_S2_contig9534.17557.1|Name=mRNA_E_fasciculatus_S2_contig9534.17557.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9534:2387..2728- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGCCAGACAGAACCCGGACGACCATTTCAATCAGAAGCACCTCCT
ACGACACAAGGCTGAGAAGATGGGGGAAACAATCTCAGATCGCTACTTCA
AGGACGTATGCGTCACCGGCTTCACCGACGAGTACAAGGACGTCAAGATG
ATCGCGTACCGCGACCCAGACTTCAACGTCGACAAGATGCGATCTACCAT
GCGTCACATGTTCCTTGACGAGCAATCTCGCAAGGGGCCGAAGGGCAGCA
TCGCTGGGCGCGGTTTCGCCATTACTACCACTACCTCAGAGGGACCGATC
TGCTTCGACTGCAGAGAGAAGGGACATATCCGAAGGAACTGC