mRNA_E_fasciculatus_S2_contig9533.17556.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9533.17556.1
Unique NamemRNA_E_fasciculatus_S2_contig9533.17556.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9533.17556.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSF0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.050e-20
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   19 YDCVYVGAGCDPDLTLPYLQGLLNVGGVMVVPFREELIRME 141
            YDCVYVGAGCDPDLTLPYLQGLLNVGGVMVVPFREEL+RME
Sbjct:  152 YDCVYVGAGCDPDLTLPYLQGLLNVGGVMVVPFREELVRME 192
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9533.17556.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.050e-2097.56protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSF0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9533contigE_fasciculatus_S2_contig9533:370..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score92.4
Seed ortholog evalue6.2e-17
Seed eggNOG ortholog2880.D8LSF0
Preferred namePCMTD2
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564
Exons1
EggNOG free text desc.protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
EggNOG OGsCOG2518@1,KOG1661@2759
Cds size147
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842601.0542638-CDS-E_fasciculatus_S2_contig9533:369..5161696842601.0542638-CDS-E_fasciculatus_S2_contig9533:369..516Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9533 370..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9533.17556.1prot_E_fasciculatus_S2_contig9533.17556.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9533 370..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9533.17556.1

>prot_E_fasciculatus_S2_contig9533.17556.1 ID=prot_E_fasciculatus_S2_contig9533.17556.1|Name=mRNA_E_fasciculatus_S2_contig9533.17556.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=49bp
GAKRTRYDCVYVGAGCDPDLTLPYLQGLLNVGGVMVVPFREELIRMEV*
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mRNA from alignment at E_fasciculatus_S2_contig9533:370..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9533.17556.1 ID=mRNA_E_fasciculatus_S2_contig9533.17556.1|Name=mRNA_E_fasciculatus_S2_contig9533.17556.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=147bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9533:370..516+ (Ectocarpus fasciculatus EfasUO2)
GGCGCAAAACGAACCAGGTACGATTGCGTGTACGTGGGAGCGGGCTGCGA
CCCGGACCTGACTCTACCGTACCTCCAGGGTCTACTCAACGTGGGAGGCG
TCATGGTGGTGCCGTTTCGCGAGGAGCTCATCCGCATGGAGGTATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9533:370..516+

>mRNA_E_fasciculatus_S2_contig9533.17556.1 ID=mRNA_E_fasciculatus_S2_contig9533.17556.1|Name=mRNA_E_fasciculatus_S2_contig9533.17556.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=147bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9533:370..516+ (Ectocarpus fasciculatus EfasUO2)
GGCGCAAAACGAACCAGGTACGATTGCGTGTACGTGGGAGCGGGCTGCGA
CCCGGACCTGACTCTACCGTACCTCCAGGGTCTACTCAACGTGGGAGGCG
TCATGGTGGTGCCGTTTCGCGAGGAGCTCATCCGCATGGAGGTATAG
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