mRNA_E_fasciculatus_S2_contig9522.17550.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9522.17550.1
Unique NamemRNA_E_fasciculatus_S2_contig9522.17550.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9522.17550.1 vs.
Match: TPR (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV0_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 1.790e-77
Identity = 146/173 (84.39%), Postives = 153/173 (88.44%), Query Frame = 1 
Query:    1 SKQAKANTGMASSPLSLPPSSRQSAAMRLVLLTLVLCCPLGWSFQQIGSPAFTRRGRVVANPTSSGSSRKMKNVCGALRSTSPRSSRTNNLISSRGLCGVDEVASEPLLALKDVVAGLVAAAFVLAADPGTALADTAMPAVSVLPSGSI-EATATSATSAEVAEVVPTIKLEG 516
            S QAK NTGMA SPLSLPPSSR+SAAMRLV+LTLVLCCPLGWSFQ IGSPAFTRRGR V NPTSSG++   KNVC ALRSTSP  +RTN  ISSRGLCG DEVASEPLLALKDV+AGLVAAAFVLAADPGTALADTAMPA S LPSGS+ EATATS TSAEV EVVPTIKLEG
Sbjct:    2 STQAKVNTGMARSPLSLPPSSRRSAAMRLVVLTLVLCCPLGWSFQ-IGSPAFTRRGRSVTNPTSSGNT---KNVCEALRSTSPWPNRTNTRISSRGLCGADEVASEPLLALKDVLAGLVAAAFVLAADPGTALADTAMPAASGLPSGSVVEATATSTTSAEVQEVVPTIKLEG 170
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9522.17550.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
TPR1.790e-7784.39domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9522contigE_fasciculatus_S2_contig9522:3946..5931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size516
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionTPR domain-containing protein
Ec32 orthologEc-16_000850.1
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842600.3300157-UTR-E_fasciculatus_S2_contig9522:3945..39721696842600.3300157-UTR-E_fasciculatus_S2_contig9522:3945..3972Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9522 3946..3972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842600.3459604-CDS-E_fasciculatus_S2_contig9522:3972..40801696842600.3459604-CDS-E_fasciculatus_S2_contig9522:3972..4080Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9522 3973..4080 +
1696842600.3646455-CDS-E_fasciculatus_S2_contig9522:4881..51181696842600.3646455-CDS-E_fasciculatus_S2_contig9522:4881..5118Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9522 4882..5118 +
1696842600.3799772-CDS-E_fasciculatus_S2_contig9522:5787..59311696842600.3799772-CDS-E_fasciculatus_S2_contig9522:5787..5931Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9522 5788..5931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9522.17550.1prot_E_fasciculatus_S2_contig9522.17550.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9522 3973..5931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9522.17550.1

>prot_E_fasciculatus_S2_contig9522.17550.1 ID=prot_E_fasciculatus_S2_contig9522.17550.1|Name=mRNA_E_fasciculatus_S2_contig9522.17550.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=163bp
MASSPLSLPPSSRQSAAMRLVLLTLVLCCPLGWSFQQIGSPAFTRRGRVV
ANPTSSGSSRKMKNVCGALRSTSPRSSRTNNLISSRGLCGVDEVASEPLL
ALKDVVAGLVAAAFVLAADPGTALADTAMPAVSVLPSGSIEATATSATSA
EVAEVVPTIKLEG
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mRNA from alignment at E_fasciculatus_S2_contig9522:3946..5931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9522.17550.1 ID=mRNA_E_fasciculatus_S2_contig9522.17550.1|Name=mRNA_E_fasciculatus_S2_contig9522.17550.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1986bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9522:3946..5931+ (Ectocarpus fasciculatus EfasUO2)
AGCAAACAGGCAAAGGCAAACACCGGCATGGCGTCGTCACCCCTGTCGCT
CCCTCCTTCCTCTCGCCAAAGTGCCGCCATGCGCTTGGTGTTGTTGACGC
TGGTCTTGTGCTGTCCCTTGGGGTGGTCATTCCAGGTACAGAAAATGATG
TGGTGTAGCCGGCAAGCTTCACTGCTGTTGTCATGTTCATGTCCTTGCGG
CACACATGTTACCGCTGCAGTTCGCCATCATACCCACGCTAGACTCGAGC
ATCGAGCATCAAATCTTGTGGGCAGCCATTGGGTGGTTGTGTTTGCAGCA
GCAAGCAGATTATTACGTAGGTCTCCTCGGACCTCGGACGCGTTGCCGTT
GGATTTGTTGCTGTGCTCATGACGTAGTATAGCACCTCCCCTGAATGGAG
GTCATTCCGCCAAGGATGTGACCCGAACGAAAAGGTTATCTGGAAGCTCT
CCACAAGGTTAGCTGGATGTCACCAAGATAGGCATCGACGCGTGCCCGTT
GCTGACGGGGTGGTGTTCTACTTTCTACTTCGGTTTGTGAAATACTACGC
GACGATCTGCAAAGTACAATGTGCCTGTGGGCGTAGCCTTGACGAGCGAG
CTTGCCGTGCACACGGAATGCGCTACATAGTAGGATTCCGTGTTATACCC
TTGGCTTGGTTCCCTGTATGCACGTCGGTGCAACAGCATGTCACTTGGAG
CATGATGCTACTTTCAAATAGCTGATTACTTCTGCTACCGTAACACGTAC
ATTATCAATAGTCTACAGATCGTGTCCCCCATGACGCGTCCGTCCTGACC
GCCTCTGTTCCGATGCATCAACCTCTTCCTCACCACAGCTGCCTACGTTA
CACGATGTCCTCACAGCTGCCTTTTGTTACACTATGTTTCATCTTCCCTG
TAATCGTGGCTCCGTTCTTCTCGGAACGCCCTTCAGCAGATTGGCTCGCC
AGCGTTTACGCGGCGCGGTCGCGTTGTGGCAAACCCCACCAGCAGTGGCA
GCAGCAGGAAGATGAAGAACGTGTGTGGGGCTTTGCGATCGACCTCTCCT
CGGTCAAGCCGCACCAACAACCTCATTAGCAGCCGCGGGCTTTGCGGCGT
GGACGAGGTGGCCAGCGAGCCGTTGCTCGCGCTCAAGGATGTAGTTGCAG
GTCTAGTGGCAGCGGCGTTTGTGGTGAGTGTGGGCGGTGCTCCCAACACT
ACACTGAAGCAGGAATGTTACACAACGTGCACACTGCGCTCTGGCTGTAA
GAACAATAGTAAATGGTAGATGCAGTGAGGTCTAAGCCGAAAGATTTGTT
TGCGGCGGCATTGTAGGGGATGGAGTACTTCATCACTAAAACAGTATTGC
ACTGCTGTGTGGGATTCATTTATTTGAACTGGGGGCCGCGAACGTCACGA
ATTTTACGGTCCTCCCTGCTGCAAGCCGCTTATCTTTAGACTACACAGAG
GTCTGGGGCAAAAATCTTTTTGGCACAATTTTTTGCATCTAATTTCTGAG
CCCGTCAGCAAATACTGTTCTATCTAGATAAGAAGTTCGGCAAATAGTCT
ACCTGGGTTTGCTGGGCCGGCCGCGTGACACCTTGCGTGGTATACACACG
CGTAGAACATGTTGTGAGATCTGTGCACAGCAGTAGGCCCTTGAATCCCA
ACCGACGAGGTTTCCTCTGTGACTGCATGCATGCGTCGTGACGAAAAGTA
CTCAACAGATAAGGAACGGGTGGGAGCGTTACCGAGCATTGCGTAGCGCG
ATGCCGTCTACCGCTGTTGTAATGGTCCTCCCAAACACACCTGCCTATCT
TACACCAGCGGTGCGTTACCGATTCTGTTTCGTCCTGCGCAGCTTGCTGC
CGATCCTGGGACGGCGCTAGCGGATACGGCGATGCCAGCGGTGTCTGTTC
TGCCTTCAGGCTCGATCGAAGCTACCGCTACCAGTGCCACCTCTGCTGAG
GTGGCGGAGGTGGTGCCAACGATCAAGCTGGAGGGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9522:3946..5931+

>mRNA_E_fasciculatus_S2_contig9522.17550.1 ID=mRNA_E_fasciculatus_S2_contig9522.17550.1|Name=mRNA_E_fasciculatus_S2_contig9522.17550.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=489bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9522:3946..5931+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGTCGTCACCCCTGTCGCTCCCTCCTTCCTCTCGCCAAAGTGCCGC
CATGCGCTTGGTGTTGTTGACGCTGGTCTTGTGCTGTCCCTTGGGGTGGT
CATTCCAGCAGATTGGCTCGCCAGCGTTTACGCGGCGCGGTCGCGTTGTG
GCAAACCCCACCAGCAGTGGCAGCAGCAGGAAGATGAAGAACGTGTGTGG
GGCTTTGCGATCGACCTCTCCTCGGTCAAGCCGCACCAACAACCTCATTA
GCAGCCGCGGGCTTTGCGGCGTGGACGAGGTGGCCAGCGAGCCGTTGCTC
GCGCTCAAGGATGTAGTTGCAGGTCTAGTGGCAGCGGCGTTTGTGCTTGC
TGCCGATCCTGGGACGGCGCTAGCGGATACGGCGATGCCAGCGGTGTCTG
TTCTGCCTTCAGGCTCGATCGAAGCTACCGCTACCAGTGCCACCTCTGCT
GAGGTGGCGGAGGTGGTGCCAACGATCAAGCTGGAGGGA
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