mRNA_E_fasciculatus_S2_contig9504.17540.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9504.17540.1
Unique NamemRNA_E_fasciculatus_S2_contig9504.17540.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: Nucleolar (protein 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSK9_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.560e-39
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPPIVL 189
            MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPPI+L
Sbjct:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPPIIL 63
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H2Y9_ACACA)

HSP 1 Score: 98.2 bits (243), Expect = 1.010e-25
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MHLMYYLE-NGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPP 180
            MHLMYYL+ +GKRVYTLKK+NP G  T SAHPARFSPDDKFS  RV  K RFG+LPTQQPP
Sbjct:    1 MHLMYYLDKDGKRVYTLKKSNPEGTATVSAHPARFSPDDKFSRQRVTLKKRFGILPTQQPP 61
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2C6_PLABS)

HSP 1 Score: 97.4 bits (241), Expect = 1.990e-25
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPPI 183
            MHLMYY+E+GKRVYTLKK +P G  T SAHPARFSPDDK+S  RV  K RFG+LPTQQ PI
Sbjct:    1 MHLMYYMEDGKRVYTLKKVDPRGMPTHSAHPARFSPDDKYSRERVTIKKRFGILPTQQAPI 61
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZ39_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 6.680e-24
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQPP 180
            M+LMYY E GKRVYTLKK  P    TESAHPARFSPDDK+S  RV  K RFG+LPTQ+PP
Sbjct:    1 MYLMYYTEEGKRVYTLKKVTPGDQPTESAHPARFSPDDKYSRERVTCKKRFGILPTQRPP 60
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit 3 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874AB97)

HSP 1 Score: 92.8 bits (229), Expect = 1.350e-23
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQP 177
            M+LMYYLENGKRVYTLKK +P GN TESAHPARFSP+DK+S  R+  K+R+G+L TQ+P
Sbjct:    1 MYLMYYLENGKRVYTLKKTDPWGNPTESAHPARFSPEDKYSKQRIIIKSRYGLLKTQKP 59
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: Nucleolar (protein 10 n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WVP2_GLOUD)

HSP 1 Score: 92.0 bits (227), Expect = 2.870e-23
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 MHLMYYL-ENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQP 177
            MHLMYYL E+GKRVYTLKK +P+G  T SAHPARFSPDDKFS  R+  K RFG+LPTQ P
Sbjct:    1 MHLMYYLGEDGKRVYTLKKEDPSGKPTHSAHPARFSPDDKFSKERIITKKRFGLLPTQTP 60
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: Nucleolar (protein 10 n=16 Tax=Peronosporaceae TaxID=4777 RepID=H3G7J4_PHYRM)

HSP 1 Score: 91.3 bits (225), Expect = 5.220e-23
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 MHLMYYL-ENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQP 177
            MHLMYYL ++GKRVYTLKK  PAG+ T SAHPARFSPDDKFS  R+  K RFG+LPTQ P
Sbjct:    1 MHLMYYLGDDGKRVYTLKKETPAGSPTCSAHPARFSPDDKFSKERITTKKRFGLLPTQSP 60
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.020e-23
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 MHLMYYL-ENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQP 177
            MHLMYY+ E+GKRVYTLKK +P G+ T SAHPARFSPDDKFS  RV NK RFG+L TQ P
Sbjct:    1 MHLMYYMGEDGKRVYTLKKEDPTGSPTVSAHPARFSPDDKFSHQRVVNKKRFGILLTQSP 60
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit NOP10 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HHH4_SPIPD)

HSP 1 Score: 90.9 bits (224), Expect = 8.230e-23
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 MHLMYYL-ENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQ 174
            MHLMYYL E+GKRVYTLKK  P G++T+SAHPARFSPDDK+S  RV  K RFG+LPTQQ
Sbjct:    1 MHLMYYLDESGKRVYTLKKLTPEGSVTKSAHPARFSPDDKYSRHRVTLKRRFGLLPTQQ 59
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Match: Nucleolar (protein 10 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S3U4_NEMVE)

HSP 1 Score: 90.1 bits (222), Expect = 1.620e-22
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 MHLMYYLEN-GKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKARFGVLPTQQ 174
            MHLMYY++N GKRVYTLKK +P+G  T SAHPARFSPDDK+S  RV  K RFG+LPTQQ
Sbjct:    1 MHLMYYMDNDGKRVYTLKKQDPSGKPTTSAHPARFSPDDKYSRHRVTLKKRFGILPTQQ 59
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9504.17540.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Nucleolar2.560e-3998.41protein 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
Nucleolar1.010e-2577.05protein 10 n=1 Tax=Acanthamoeba castellanii str. N... [more]
Nucleolar1.990e-2573.77protein 10 n=1 Tax=Plasmodiophora brassicae TaxID=... [more]
Nucleolar6.680e-2471.67protein 10 n=1 Tax=Chloropicon primus TaxID=176429... [more]
H/ACA1.350e-2371.19ribonucleoprotein complex subunit 3 n=1 Tax=Anoplo... [more]
Nucleolar2.870e-2373.33protein 10 n=3 Tax=Pythiaceae TaxID=4782 RepID=K3W... [more]
Nucleolar5.220e-2373.33protein 10 n=16 Tax=Peronosporaceae TaxID=4777 Rep... [more]
Nucleolar8.020e-2373.33protein 10 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
H/ACA8.230e-2374.58ribonucleoprotein complex subunit NOP10 n=2 Tax=Sp... [more]
Nucleolar1.620e-2272.88protein 10 n=1 Tax=Nematostella vectensis TaxID=45... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9504contigE_fasciculatus_S2_contig9504:3059..5395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score132.5
Seed ortholog evalue7e-29
Seed eggNOG ortholog2880.D7FSK9
Preferred nameNOP10
Model size192
KEGG koko:K11130
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000454,GO:0000469,GO:0000723,GO:0000741,GO:0001522,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007004,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009553,GO:0009559,GO:0009561,GO:0009790,GO:0009987,GO:0010197,GO:0010467,GO:0010833,GO:0015030,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016074,GO:0016604,GO:0018130,GO:0019438,GO:0019843,GO:0022613,GO:0030097,GO:0030154,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032200,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035162,GO:0040031,GO:0042254,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048229,GO:0048284,GO:0048513,GO:0048518,GO:0048534,GO:0048568,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0051276,GO:0060215,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090305,GO:0090501,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904872,GO:1904874,GO:1990904
Exons2
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG2260@1,KOG3503@2759
Ec32 ortholog descriptionNop10 subunit of the H/ACA ribonucleoprotein complex
Ec32 orthologEc-04_000370.1
Cds size192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842599.4865763-CDS-E_fasciculatus_S2_contig9504:3058..31091696842599.4865763-CDS-E_fasciculatus_S2_contig9504:3058..3109Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9504 3059..3109 +
1696842599.4980671-CDS-E_fasciculatus_S2_contig9504:5254..53951696842599.4980671-CDS-E_fasciculatus_S2_contig9504:5254..5395Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9504 5255..5395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9504.17540.1prot_E_fasciculatus_S2_contig9504.17540.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9504 3059..5395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9504.17540.1

>prot_E_fasciculatus_S2_contig9504.17540.1 ID=prot_E_fasciculatus_S2_contig9504.17540.1|Name=mRNA_E_fasciculatus_S2_contig9504.17540.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=64bp
MHLMYYLENGKRVYTLKKANPAGNLTESAHPARFSPDDKFSGARVANKAR
FGVLPTQQPPIVL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9504:3059..5395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9504.17540.1 ID=mRNA_E_fasciculatus_S2_contig9504.17540.1|Name=mRNA_E_fasciculatus_S2_contig9504.17540.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2337bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9504:3059..5395+ (Ectocarpus fasciculatus EfasUO2)
ATGCACCTCATGTACTACCTGGAGAACGGCAAGCGGGTCTACACGCTCAA
GGTTAGTGGTGTGAAGAGTGCGGGGCCTGCTGTGCCCTCCCTATTCCAAA
ACACACCACACACAGGCGGAAGCTGTGGACACCCATGGACCAAGTCATGC
CTGTGGGATACACACACATCTCCCGTGGCTCTGTGTAGATAGAGGTCTGC
TGGGTCTCGTGCATTCATGCCTCTATTAGAGACTCAGCGTGCCTACTCTA
CTGCTGTACACACACCATGCGGCATGATGCCCCGCTTCCGCTTGCTTGAG
TGACATATTTCAGGCGGCGTGAAGTAGTCTGCGTTCCCAGCCTGCATGTT
GCTACCTCTCGGCCGACATTTGTCGATTGTCTGCATTCGCACACACTATA
TATCGTAGTCTACATGAGTCTCTGCTGCGGTTGTCTCCAGGTACCGTATT
GTCATGTGGCGAAGTTGACCGCGTGAGGTCATGACCGGTATCAGATGTGA
GCGAGTGAGAGCATGTGACTTGTACTTCGAGCAAGTACAACGGTGGCAGA
TGGATATAGGGCGTGTTGATCATCTCAACCCTTATTCTCCGGAGTAAACA
TATTTCGACGAGCAGCACACATGGAATATCCCGATGGTAATTAAGCTGCC
AGCGGGGGTGGCTGTTCGAATGTGCCTGGCGGACTACCCTCGCTGAACTC
GTCTACACCATGTACTACAGTACACGTGAAGTATCTGCCCATTTGGATGC
CTACATGGCTCCCACGTTCGGATAATAAGCATGTTTGGAAGCAGCGGACC
ATCGTTTGGTGATTTTTTGGCACAGCACCCATACGTGGGGCAATTTTTAT
GTTGGACCGGAAGATCTAAAATTATTCATCGATGTTTTAGGGGGGTAGAG
CCGGGTAGTTTCCGTCCTCCCACCAATCACATGTCGATTACGTAGGACAT
TGTGTAGGACAGAGACAGATGGTTGGTTGCTGGTCATGGCGCCGAGGGAT
AATCCCCCGAAATACGCAGCAGCAGCAGCAGCACATGACACACTCACGTA
GACAACACACGAGACAACAAGCACAGCAGCACGCGAGACTGCTGTAGACA
AAGGACAGCGAAGGACACACATCATAGGAGCTGTCCGGTGCGACGGTCAG
GGTCCTTTGCCTGCTGTCGGCAGCACAACAAGCGAGGGAGGCTACAGGTC
AACCTGCTGTCTGTGTCTCTTCTCAGCGAGGCCGATCTTTTGTGAGCTTC
CCACACAGACAGATATACCCCCGAAAACAGAGAATGAGCCGAACACACTG
CTGCAGGCCCAGGGCGGCCGAACACAAGATACGAGGCGTCGGGAGCGATT
TTTGTAGCCCGTTGCCTGCTGCTGGCAGCGTATAAGCGAGCAAGTGCACA
CAAGTCAATCTGTATTTGTCTGTCCAGGGCGATCTTTTTTTGATCCACAA
CAGACCCACCCAAAAACAGATACACAATCGCACACTGCTGAGGCCACGGA
CGACCAACTAATACGCGCATAAAGGGCGTCGGGGGCTATTTTTAGAGCCC
GTTGTCTGCTGCTAGCGGCGTGAGCAAGGGAAGTATGTAGTACACATGCA
CACAGCAGCAGCAGCAAGCAGCTGATTTGAGAGCTTCGTCCACACCACCA
TCAAACGACACCGTCCCTTCACTCCTGTACAGCAGAGGTCCTGCGTATAA
GTCTGGCTGGTGGTGTCGGGTGAGGTGTGAACGTGTGCAGTGGCAGTGGT
GGCCTCTGTGTGGTGGCTTAGGCTCCATCCATAACTATCTATCTACGCCT
GTCGCGCTACGCTCTCTCCGCGCCTTGCGAAATAATTTATTATTTAATGT
TGGACCCCAATGTATGGCAGGTGTGCCGTTTTTTTTCCCCGCTCTTGACC
GCAGGAGGAAGGTGGGGCACGAAAATCAAAAAAGAGAAAAAAAAATCTCC
GGTGTTCACCCCGTCATGCCGTCATGTGTGACGAATCCTGCTACCAGCCT
GACCCCCCCCCCCCCTCTCCAACGATGCCTGTTTGCTGTGCCCCGTTGGT
GTGTTTGATATTCGCTGTGATTGCGCCGCTGAAAAATAGCGAACCCCGCC
GGTAACCTGACGGAGTCCCCCATCCCCCCGCCCGATGATGCATGTCTGTT
GTGACCCCCGTTGCGTGTGTGACAATCACTGTGATTGCGCCGCCAGAAAG
CGAACCCCGCCGGGAACCTGACGGAGTCGGCCCACCCAGCGCGCTTCTCC
CCCGACGACAAGTTCTCCGGTGCAAGAGTAGCCAACAAGGCTCGATTCGG
CGTGCTGCCTACACAGCAGCCGCCGATCGTTCTCTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9504:3059..5395+

>mRNA_E_fasciculatus_S2_contig9504.17540.1 ID=mRNA_E_fasciculatus_S2_contig9504.17540.1|Name=mRNA_E_fasciculatus_S2_contig9504.17540.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=192bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9504:3059..5395+ (Ectocarpus fasciculatus EfasUO2)
ATGCACCTCATGTACTACCTGGAGAACGGCAAGCGGGTCTACACGCTCAA
GAAAGCGAACCCCGCCGGGAACCTGACGGAGTCGGCCCACCCAGCGCGCT
TCTCCCCCGACGACAAGTTCTCCGGTGCAAGAGTAGCCAACAAGGCTCGA
TTCGGCGTGCTGCCTACACAGCAGCCGCCGATCGTTCTCTGA
back to top