mRNA_E_fasciculatus_S2_contig95.17532.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig95.17532.1
Unique NamemRNA_E_fasciculatus_S2_contig95.17532.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig95.17532.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH89_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 3.170e-64
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 MAPKLFAVLLALYCACASAFIAPSAVKAGSFAAPAVRATSMVAPKMTMGLEQIADVLPLVPTEAHNAGFEMANNPLLLSVTAESFGGLIGPISGCLAVAIFIVVMAPPRVD 333
            MAPKLFAVL ALYCACASAFIAPSAVK+GSFA PAVRATSMVAPKMTMGLEQIADVLPLVP+EAHNAGFEMANNPLLLSV+A+SFGGLIGPI GCLAVAIFIVVMAPPRVD
Sbjct:    1 MAPKLFAVLFALYCACASAFIAPSAVKSGSFATPAVRATSMVAPKMTMGLEQIADVLPLVPSEAHNAGFEMANNPLLLSVSADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 111
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig95.17532.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.170e-6493.69protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH89... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig95contigE_fasciculatus_S2_contig95:24653..28097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size336
Hectar predicted targeting categorychloroplast
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001000.1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842598.594589-CDS-E_fasciculatus_S2_contig95:24652..247281696842598.594589-CDS-E_fasciculatus_S2_contig95:24652..24728Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig95 24653..24728 +
1696842598.6080031-CDS-E_fasciculatus_S2_contig95:27837..280971696842598.6080031-CDS-E_fasciculatus_S2_contig95:27837..28097Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig95 27838..28097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig95.17532.1prot_E_fasciculatus_S2_contig95.17532.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig95 24653..28097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig95.17532.1

>prot_E_fasciculatus_S2_contig95.17532.1 ID=prot_E_fasciculatus_S2_contig95.17532.1|Name=mRNA_E_fasciculatus_S2_contig95.17532.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=112bp
MAPKLFAVLLALYCACASAFIAPSAVKAGSFAAPAVRATSMVAPKMTMGL
EQIADVLPLVPTEAHNAGFEMANNPLLLSVTAESFGGLIGPISGCLAVAI
FIVVMAPPRVD*
back to top

mRNA from alignment at E_fasciculatus_S2_contig95:24653..28097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig95.17532.1 ID=mRNA_E_fasciculatus_S2_contig95.17532.1|Name=mRNA_E_fasciculatus_S2_contig95.17532.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3445bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig95:24653..28097+ (Ectocarpus fasciculatus EfasUO2)
ATGGCACCCAAGCTCTTCGCCGTACTCCTTGCCCTCTACTGCGCGTGCGC
ATCCGCGTTCATCGCACCCTCGGCCGGTGAGTTTTGGGCATTTTTTCGGT
CAAAATGCCCGTCCCCGTGTGTGTGCCCTTGAACGATGCTCTCCCCGTCT
GTTCGGTTCATGCAGGAGACTGTGCGGCAGTAGAACGTGGGCGGCGTGCC
GCCGTGACCTGTGAATGGGTTGGTTGTCCATCCTTCTGTAAGGGCTTAAG
TCATGGAGTTGTTGATGGCCTCATCGCTTCATAAAGCAGCTTTGTTTATG
AGGGTTTGGGTGCAAATTGCTCACGTCTCCTTTGGGGGCAGCAGCCGTGG
CCTCTCATGCTGCCATATGACAGGCTTGATGAGGTGGGGCAGGGAGGTGC
TTGCCCTCTCGGGAACCAGCGTGGTTTGGTGCTATGTCCGTCGTCAGCGG
CCTCAGTCACGTGTCGGATCTCTTGGGTGTGTTGTGAGAGTTCAGCTCTG
CTTGCCCTCCTTTTGCATGGCGCTAGACTGGCTGCTGTCTGGCTGCTGCT
GTGCAGGATCGATCATCCAGTTTTTTTATTCAACTTGCCCACGCACTTCC
AGAGATGCAACAACGCACACGAACGGTGTCAAAGGAGAGCAAAGCTGACA
CCAGTACCCTCATGCTACACACACTTTTCCGGTGCCACGGCACGACCTTT
CACCGGCTGACGAGGTCGAGTCGCACGCAACTCGAAATGCCGGCCGTTTG
AGAGGGTCGCCGACAGACATGTCTTCCCGGTATTGTGGTACTGCGTACAA
AGCAGTGCTTTGTGTGTGATGAAGTGCGTCCCTATTCCATTGTAGCATGC
CTTTCGACACACATGATCCTACATTACCACATGAAATGAATGTATACCTT
CCCATAGCTGCTGTCGTCCGTTGGGCGAGGAGTGATACCGAAAGGGGGGT
TGCCCATCTCCATTCACGGGCCATCAGCTGTGTCGTCCTCGTGCCCGTTG
GGTCGCAAACGGATTCTGGTATTATTGCCGAGGCGCATGGCAGTACTCCT
GTATGTAGGGCGCCCTTTGCAGTATGCAGCCTCCAACACACGATGCAATC
GCTTCGGCTTTACAGCACAGCAGTTGTACCCCTTCGTCTCGTCGACGTAG
CGGTAGCGAGGGCCGAGAGCGCTTGGCCATTTGTGTGACGGCATGCTCGC
ATGCAACGCAGCGGGAAGTGAAAACGGTTACAATACTCGATCATTCTTGT
GAAGACAAGGTTGAAGTGCGTTTCTATTGGTCCATTGGTCCCGAACGGGG
AACCACCTACCCGCGTCCCCTGCATCGTGAGTTGTCGTTCCTGGTGCGCG
CTGCTTCGGATATGCTCATGTATGTGATCACATAGTTGAACGGCTATAAA
ATGTAGTTGTCGACGGTGGATCGGCACGGTATCCCACACATGTCTGTCTC
TAACCCGTTGCTATCTGTAAGTCTTGCTGCTGTGTGGGTTGGGGCTCAAG
GCGTCGGTCCTTTCGGCCAACTCGATCGCCTACACGGCCTTCTCCCGTCA
TTGTGTCCAATCCAGATGCAGCTGATATGGCACATGCACATATTGCGTGT
ACCTTTTCAGCTGCGTCTGGACTGGAGACTGTGATGAAAGATGGCAATGT
ACACGATCGAGTCGTCCGAAAAGACTTCGCGTTGAACTCCAACCTAAAAG
GACCGAGGCAAAATAAATGGCCCTCGTACCTAATTCGACGCGTGCCCTGC
GTCACATTGTTGACGCAACGCAGTCGTTCATCGTTCAGATCACCCCAAGC
CTCTCCATCCCCCTAGCCGCGTTCGTTGAACGCTCGAGGAAGAGAGTACC
CCCGACCGGGTACACATGTAACTCTTGATGCCCTTGGGAAGATTTGTATG
CATTTGTTTGTCCAGGGTTCTCGCCGCATCTGTTCCTGTTGCTTTACCGT
GTGGTGTCATGAAGGAAATTCGAATCAGGGTGTAGGGCGGGTGGGAAACG
AAGCTGCTGCGTGCTGCGGCGCTTTGTTGGCGGTCAGGGGTGAAGTTTGC
GTCGTTCCCGACCCCAACGGAAGCAACGGGTCGCCGTTGCTTTCCAAGTT
CACTTCGGGCGCATATTCTAGATGCCACCGCCGTATCGTCTCCCAGCCCG
TGTAAAACCTGCAACCCCCCACGCAAGGTACTGGGATCGGTACGACGCCG
GGTTCGAATATCCGATGTTTCATCTTGCCGGGGCTCTCGGGCCGAATCGC
GGAAGTATGAAATAGGAGGGTGTCGCCCTTGGAGTGTGCCTACAGGTGTA
CTTGAAAACAAGTTGTCAACGCCTACATGTAAAGCAATTTTCAAGCCTTG
GTAGTATACAACGTCTTGCTGGGCGCAGAAAGTTGTTATTAAACACTGAC
GGGGGCCGCCCTCGCCAAACAGTCAAATCCAAAGGCTACATCCAGTCGTT
GGGGGCTGTGGTGAAGCAAGAACTTTCTGCACCCAGCAAGAAGTGGTATT
CTATTCTACCGATGTGATGTGGTTTTCTGTCCCGACGAAGAAACGGGGTG
GAAAGGTCCCCCTTGATGTACGCAATTTTGGACTCCGCTTGTGAACCGGT
TAATAATTGCCACCTGTGCATGCCGCATCTGCATTGTGTTCAGTGGTGCA
AAGTCAACGTCGTTCGGTCGTTCGCTTCGATTGGCGACGACCGGGCGTGA
GACGCCGCCTTCAAACCCTTCCATACACTTTGAGTGTGACAAGTTATAAC
CTCGCACCTTCAGGGTTCTCTAGATGACTGTTTGAACAACCGGAAGATTC
GCGCAGCACCTGTCCTGTCTACTTTTTTACAGCAAGATTATCGTGCCCTT
AGCAATCAATGCAAACCGCAACCTTATTTCTAGTATACAGTGCCCGGACA
CACGCCGTTGAGAAAGCCTCATTGCTGGAACCCGGCTAGCCAGGAGGTGC
GCTCCTACGTGCTGTGACTTTTGAGTTTTTTTTCTCATGTACATGTCTTT
TTTTTTGGTAGTTGGCCATTATAGTGACCACGAACGGCTTCCGCGTCAGT
TGGACCAAAACGGACATAAGAAGGTACAGTACTGAGCGGAGACCGGTTTG
TATTGTGAAGACAACAACAACATAACTGACGAACCACTCCCCCCTCTCGT
GACGACCTTCCCTGCTTTCTCGTCCCCATCCGCAGTCAAGGCCGGATCCT
TCGCTGCCCCCGCCGTGCGCGCCACTTCCATGGTGGCACCCAAGATGACC
ATGGGCCTCGAGCAGATCGCGGACGTCCTCCCCCTGGTGCCGACGGAGGC
ACACAACGCAGGGTTCGAGATGGCGAACAACCCCCTGCTGCTTTCGGTGA
CCGCGGAATCGTTCGGCGGATTGATCGGCCCCATCAGCGGCTGCCTCGCC
GTGGCGATCTTCATCGTCGTCATGGCGCCCCCGCGGGTCGACTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig95:24653..28097+

>mRNA_E_fasciculatus_S2_contig95.17532.1 ID=mRNA_E_fasciculatus_S2_contig95.17532.1|Name=mRNA_E_fasciculatus_S2_contig95.17532.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=336bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig95:24653..28097+ (Ectocarpus fasciculatus EfasUO2)
ATGGCACCCAAGCTCTTCGCCGTACTCCTTGCCCTCTACTGCGCGTGCGC
ATCCGCGTTCATCGCACCCTCGGCCGTCAAGGCCGGATCCTTCGCTGCCC
CCGCCGTGCGCGCCACTTCCATGGTGGCACCCAAGATGACCATGGGCCTC
GAGCAGATCGCGGACGTCCTCCCCCTGGTGCCGACGGAGGCACACAACGC
AGGGTTCGAGATGGCGAACAACCCCCTGCTGCTTTCGGTGACCGCGGAAT
CGTTCGGCGGATTGATCGGCCCCATCAGCGGCTGCCTCGCCGTGGCGATC
TTCATCGTCGTCATGGCGCCCCCGCGGGTCGACTAA
back to top