mRNA_E_fasciculatus_S2_contig9497.17526.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9497.17526.1
Unique NamemRNA_E_fasciculatus_S2_contig9497.17526.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K143_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.640e-64
Identity = 95/119 (79.83%), Postives = 108/119 (90.76%), Query Frame = 1
Query:   28 MPMFDRGHGGYRVEGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELEDNLLSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHEDDRNRIMRLLAGTNAIDHIVVRIH 384
             P+ +RG G Y++E V KCGSC+RSEH +L K+FKV+TEHFVLAELQRRMPELE+N LSWDCPLPCAISTERADMLWQIGSTLLHVEVDE ATHEDDR R+MRLLAGT+++DHIVVRIH
Sbjct:  211 FPILERGRGRYKIEWVNKCGSCVRSEHLDLLKRFKVKTEHFVLAELQRRMPELENNFLSWDCPLPCAISTERADMLWQIGSTLLHVEVDEIATHEDDRKRLMRLLAGTDSVDHIVVRIH 329          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 4.460e-60
Identity = 99/119 (83.19%), Postives = 106/119 (89.08%), Query Frame = 1
Query:   28 MPMFDRGHGGYRVEGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELEDNLLSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHEDDRNRIMRLLAGTNAIDHIVVRIH 384
             PM +RG G YR++    CGSCLRSEHP+LAKKFKVRTEHFVLAELQRRMPELE N LSWDCPLP AISTERADMLWQIGS LLHVEVDETATHEDDRNR+MRLLAGT+A+ HIVVRIH
Sbjct: 2120 FPMIERGCGTYRIDDDFLCGSCLRSEHPDLAKKFKVRTEHFVLAELQRRMPELEGNFLSWDCPLPYAISTERADMLWQIGSVLLHVEVDETATHEDDRNRLMRLLAGTDAVHHIVVRIH 2238          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E0R6_SYMMI)

HSP 1 Score: 85.5 bits (210), Expect = 5.120e-18
Identity = 52/135 (38.52%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   19 CITMPMFDRGHGGYRV-------EGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELEDNL--LSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHED----DRNRIMRLLAGTNAIDHIVVRIH 384
            CI+ P   R  G +R        EG P+C SCL +++P+ A K KVR EH +LAELQRR+P L +    L WDCP+P   + +R DML+++    + +EVDE   HED    D +  + L+A    +  +V+R++
Sbjct:   21 CISPPTA-RVKGRFRAAARFRSPEGHPQCWSCLAAQYPDRA-KLKVRKEHLMLAELQRRLPWLGEKAEQLIWDCPVPGGCTLKRPDMLFRLEDRFVQIEVDEEG-HEDLSCADEDSRLELIAADVGLPGLVLRLN 152          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: Putative (WRKY transcription factor 19 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DPX8_SYMMI)

HSP 1 Score: 86.7 bits (213), Expect = 9.330e-18
Identity = 52/132 (39.39%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    7 ESSACITMPMFDRGHGGYRVEGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELEDNL--LSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHED----DRNRIMRLLAGTNAIDHIVVRIH 384
            E+ A +  P F R       EG P C SCL +++P+ A K KVR EH +LAELQRR+P L +    L WDCP+P   + +R DML+++    + VEVDE   HED    D +  + L+A    +  +V+R++
Sbjct:  102 EACALLAPPPFARFRSS---EGQPLCWSCLAAQYPDRA-KLKVRKEHLMLAELQRRLPWLGEKAEQLIWDCPVPGGCTLKRPDMLFRLEDRFVQVEVDEEG-HEDLSCADEDSRLELIAADVGLPGLVLRLN 228          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z177_SYMMI)

HSP 1 Score: 81.6 bits (200), Expect = 3.230e-16
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    1 KCESSACITMPMFDRGHGGYR-VEGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELED--NLLSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHED----DRNRIMRLLAGTNAIDHIVVRIH 384
            +C+S+ C  +      H G++   G   C  CL +++P  A K KVR EH +LAELQRR+P L +    L WDCP+P   + +R DML+++    + VEVDE   HED    D +  + L+A    +  +V+R++
Sbjct:   66 RCQSAVCSALE--SPPHAGFKDPAGRALCWPCLGAQYPERA-KLKVRKEHLMLAELQRRLPWLGEWAQQLIWDCPVPGGCTLKRPDMLFRLEDRFVQVEVDEEG-HEDLSCADEDSRLELIAADVGLPGLVLRLN 196          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C100_SYMMI)

HSP 1 Score: 81.3 bits (199), Expect = 3.470e-16
Identity = 48/135 (35.56%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    1 KCESSACITMPMFDRGHGGYR-VEGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELED--NLLSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHED----DRNRIMRLLAGTNAIDHIVVRIH 384
            +C+S+ C  +      H G++   G   C  CL +++P  A K KVR EH +LAELQRR+P L +    L WDCP+P   + +R DML+++    + +EVDE   HED    D +  + L+A    +  +V+R++
Sbjct:   49 RCQSAVCSALE--SPPHAGFKDPAGRALCWPCLGAQYPERA-KLKVRKEHLMLAELQRRLPWLGEWAQQLIWDCPVPGGCTLKRPDMLFRLEDRFVQIEVDEEG-HEDLSCADEDSRLELIAADVGLPGLVLRLN 179          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: WRKY19 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZDW4_SYMMI)

HSP 1 Score: 80.9 bits (198), Expect = 5.340e-16
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   67 EGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELEDNL--LSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHED----DRNRIMRLLAGTNAIDHIVVRIH 384
            +G P C  C  +++P+ A KFKVR EH +LAELQRR+P L +    L WDCP+P   + +R DML+++    + VEVDE   H+D    D    + L+A    +   V+R++
Sbjct:  108 DGQPLCWGCFTAQYPDRA-KFKVRKEHLILAELQRRLPWLGERATQLVWDCPVPGGCTLKRPDMLYRLDDRFVQVEVDEEG-HDDLSCADEESRLELIAADVGLPGFVLRLN 217          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: Putative (WRKY transcription factor 19 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9BX72_SYMMI)

HSP 1 Score: 80.5 bits (197), Expect = 2.770e-15
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    1 KCESSACITMPMFDRGHGGYR-VEGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELEDNL--LSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHED----DRNRIMRLLAGTNAIDHIVVRIH 384
            +C S AC    + D     +R ++G   C  C  +++P  A K KVR EH +LAELQRR+P L +    L WDCP+P   + +R DML+++    + VEVDE   HED    D +  + L+A    +  +V+R++
Sbjct:  184 RCTSEACA---LLDVRPARFRDLDGKQICWGCFTAQYPERA-KLKVRKEHLMLAELQRRLPWLGERATQLIWDCPVPGGCTLKRPDMLYRLEDRFVQVEVDEEG-HEDLSCADEDSRLELIAADVGLPGLVLRLN 313          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: Putative (WRKY transcription factor 19 (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9BQ62_SYMMI)

HSP 1 Score: 80.1 bits (196), Expect = 3.320e-15
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   67 EGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELEDNL--LSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHED----DRNRIMRLLAGTNAIDHIVVRIH 384
            EG P C SCL +++P+ A K KVR EH +LAELQRR+P L +    L WDC +P   + +R DML+++    + VE+DE   HED    D +  + L+A    +  +V+R++
Sbjct:  156 EGQPLCWSCLAAQYPDRA-KLKVRKEHLMLAELQRRLPWLGERATELIWDCTVPGGCTLKRPDMLFRLEDRFVQVEIDEEG-HEDRNCADEDSRLELIAADVGLPGLVLRLN 265          
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Match: WRKY19 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B2U5_9DINO)

HSP 1 Score: 80.5 bits (197), Expect = 4.030e-15
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    1 KCESSACITMPMFDRGHGGYR-VEGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRMPELEDNL--LSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHED----DRNRIMRLLAGTNAIDHIVVRIH 384
            +C S AC    + D     +R ++G   C  C  +++P  A K KVR EH +LAELQRR+P L +    L WDCP+P   + +R DML+++    + VEVDE   HED    D +  + L+A    +  +V+R++
Sbjct:  171 RCTSEACA---LLDVRPARFRDLDGKQICWGCFTAQYPERA-KLKVRKEHLMLAELQRRLPWLGERATQLIWDCPVPGGCTLKRPDMLYRLEDRFVQVEVDEEG-HEDLSCADEDSRLELIAADVGLPGLVLRLN 300          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9497.17526.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Uncharacterized1.640e-6479.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.460e-6083.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.120e-1838.52protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Putative9.330e-1839.39WRKY transcription factor 19 n=1 Tax=Symbiodinium ... [more]
Hypothetical3.230e-1636.30protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Uncharacterized3.470e-1635.56protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
WRKY195.340e-1639.29protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Putative2.770e-1536.30WRKY transcription factor 19 n=1 Tax=Symbiodinium ... [more]
Putative3.320e-1540.18WRKY transcription factor 19 (Fragment) n=1 Tax=Sy... [more]
WRKY194.030e-1536.30protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9497contigE_fasciculatus_S2_contig9497:358..741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size384
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842597.8299792-UTR-E_fasciculatus_S2_contig9497:357..3841696842597.8299792-UTR-E_fasciculatus_S2_contig9497:357..384Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9497 358..384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842597.843213-CDS-E_fasciculatus_S2_contig9497:384..7411696842597.843213-CDS-E_fasciculatus_S2_contig9497:384..741Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9497 385..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9497.17526.1prot_E_fasciculatus_S2_contig9497.17526.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9497 385..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9497.17526.1

>prot_E_fasciculatus_S2_contig9497.17526.1 ID=prot_E_fasciculatus_S2_contig9497.17526.1|Name=mRNA_E_fasciculatus_S2_contig9497.17526.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=119bp
MPMFDRGHGGYRVEGVPKCGSCLRSEHPNLAKKFKVRTEHFVLAELQRRM
PELEDNLLSWDCPLPCAISTERADMLWQIGSTLLHVEVDETATHEDDRNR
IMRLLAGTNAIDHIVVRIH
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mRNA from alignment at E_fasciculatus_S2_contig9497:358..741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9497.17526.1 ID=mRNA_E_fasciculatus_S2_contig9497.17526.1|Name=mRNA_E_fasciculatus_S2_contig9497.17526.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=384bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9497:358..741+ (Ectocarpus fasciculatus EfasUO2)
AAATGCGAGTCATCGGCATGCATTACAATGCCGATGTTCGACAGGGGGCA TGGTGGCTACAGAGTTGAAGGTGTTCCGAAATGCGGCAGTTGTCTCCGAA GCGAGCACCCCAATCTGGCAAAAAAGTTCAAGGTGCGGACTGAGCATTTT GTTCTGGCGGAGCTGCAGAGACGGATGCCCGAGTTGGAAGACAACTTACT GTCGTGGGACTGCCCTCTCCCTTGTGCGATTTCGACGGAGAGAGCGGACA TGCTTTGGCAAATTGGATCGACTTTGCTGCACGTAGAGGTGGACGAAACA GCGACACACGAAGACGACCGGAACAGGATCATGCGTCTTCTAGCGGGAAC CAATGCCATTGATCATATCGTAGTGAGAATCCAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9497:358..741+

>mRNA_E_fasciculatus_S2_contig9497.17526.1 ID=mRNA_E_fasciculatus_S2_contig9497.17526.1|Name=mRNA_E_fasciculatus_S2_contig9497.17526.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9497:358..741+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGATGTTCGACAGGGGGCATGGTGGCTACAGAGTTGAAGGTGTTCC
GAAATGCGGCAGTTGTCTCCGAAGCGAGCACCCCAATCTGGCAAAAAAGT
TCAAGGTGCGGACTGAGCATTTTGTTCTGGCGGAGCTGCAGAGACGGATG
CCCGAGTTGGAAGACAACTTACTGTCGTGGGACTGCCCTCTCCCTTGTGC
GATTTCGACGGAGAGAGCGGACATGCTTTGGCAAATTGGATCGACTTTGC
TGCACGTAGAGGTGGACGAAACAGCGACACACGAAGACGACCGGAACAGG
ATCATGCGTCTTCTAGCGGGAACCAATGCCATTGATCATATCGTAGTGAG
AATCCAC
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