mRNA_E_fasciculatus_S2_contig9494.17524.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9494.17524.1
Unique NamemRNA_E_fasciculatus_S2_contig9494.17524.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9494.17524.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9494contigE_fasciculatus_S2_contig9494:827..1516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size690
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842597.6414218-UTR-E_fasciculatus_S2_contig9494:826..9181696842597.6414218-UTR-E_fasciculatus_S2_contig9494:826..918Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9494 827..918 +
1696842597.6626213-UTR-E_fasciculatus_S2_contig9494:1347..15161696842597.6626213-UTR-E_fasciculatus_S2_contig9494:1347..1516Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9494 1348..1516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842597.6531456-CDS-E_fasciculatus_S2_contig9494:918..13471696842597.6531456-CDS-E_fasciculatus_S2_contig9494:918..1347Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9494 919..1347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9494.17524.1prot_E_fasciculatus_S2_contig9494.17524.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9494 919..1347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9494.17524.1

>prot_E_fasciculatus_S2_contig9494.17524.1 ID=prot_E_fasciculatus_S2_contig9494.17524.1|Name=mRNA_E_fasciculatus_S2_contig9494.17524.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=143bp
MFTAPGSNVLCDGFDPLAAWGDGTNGVAPGERLIWSPKNSNEISEPSERT
ELEVLVARAPDDDDDAAAPDDDATAPDDEASTASCRIRCCHFTVVSDRGV
GERPRFNARRCAAISARHRASDSSNGERLSILHHHPHPWMMT*
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mRNA from alignment at E_fasciculatus_S2_contig9494:827..1516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9494.17524.1 ID=mRNA_E_fasciculatus_S2_contig9494.17524.1|Name=mRNA_E_fasciculatus_S2_contig9494.17524.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=690bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9494:827..1516+ (Ectocarpus fasciculatus EfasUO2)
CTACGACGGACGAGTGCGCTGTTAGGCAACTTGCAATCAATGTTGACGCA
GGTGGCGGTGCACTACTCGACGAACACGACACGGACGGATCCATGTTTAC
GGCCCCAGGGAGTAACGTACTCTGCGACGGATTTGATCCACTCGCTGCCT
GGGGGGACGGGACGAACGGGGTGGCTCCGGGGGAGAGGCTTATCTGGTCC
CCCAAGAATTCCAACGAGATCTCAGAACCCTCTGAACGTACCGAGTTGGA
AGTGCTCGTTGCCCGAGCTCCCGATGACGACGACGACGCGGCTGCACCGG
ACGATGATGCGACGGCGCCGGACGACGAGGCCTCCACCGCCTCCTGTAGG
ATCCGCTGCTGCCACTTCACCGTGGTCTCGGACAGGGGGGTAGGGGAACG
ACCACGCTTCAACGCGCGGAGGTGTGCCGCGATTTCGGCGCGGCACAGAG
CTTCAGACAGCTCCAACGGGGAGAGGTTATCTATTCTACATCATCATCCA
CATCCATGGATGATGACCTAGACTCCTGCTCAGACGAGGACGACGACGAC
GAACCTGCACGCTCTGCGCGCTGGCCTCCGGACTGCTCTTCGGCCTGATC
TTCCGGCTCCGAGCCCTCGAAGTCCATCTCCGGAGAGATGGTGTCGTCGT
TGGTTTCCGTGCTGGGCACGTTTGTTTCTTTTTCCTGCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9494:827..1516+

>mRNA_E_fasciculatus_S2_contig9494.17524.1 ID=mRNA_E_fasciculatus_S2_contig9494.17524.1|Name=mRNA_E_fasciculatus_S2_contig9494.17524.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=429bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9494:827..1516+ (Ectocarpus fasciculatus EfasUO2)
ATGTTTACGGCCCCAGGGAGTAACGTACTCTGCGACGGATTTGATCCACT
CGCTGCCTGGGGGGACGGGACGAACGGGGTGGCTCCGGGGGAGAGGCTTA
TCTGGTCCCCCAAGAATTCCAACGAGATCTCAGAACCCTCTGAACGTACC
GAGTTGGAAGTGCTCGTTGCCCGAGCTCCCGATGACGACGACGACGCGGC
TGCACCGGACGATGATGCGACGGCGCCGGACGACGAGGCCTCCACCGCCT
CCTGTAGGATCCGCTGCTGCCACTTCACCGTGGTCTCGGACAGGGGGGTA
GGGGAACGACCACGCTTCAACGCGCGGAGGTGTGCCGCGATTTCGGCGCG
GCACAGAGCTTCAGACAGCTCCAACGGGGAGAGGTTATCTATTCTACATC
ATCATCCACATCCATGGATGATGACCTAG
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