mRNA_E_fasciculatus_S2_contig947.17503.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI) HSP 1 Score: 202 bits (515), Expect = 5.730e-58 Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 2
Query: 68 TKGGSGEKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELLHHKPREPIRYQVICM 376
TK G G+KHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGST VATARVICSCGIPRFKTR+GWISEWLRGGENELVVELLHHKPREPIRYQVICM
Sbjct: 6676 TKVG-GDKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTVVATARVICSCGIPRFKTRRGWISEWLRGGENELVVELLHHKPREPIRYQVICM 6777
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE) HSP 1 Score: 191 bits (485), Expect = 6.300e-54 Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 2
Query: 68 TKGGSGEKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELLHHKPREPIRYQVICM 376
TKGG G+KHPDIVPGEYLLKVVYSKGATMRDGVEIDLAA VGNLPFGST VATARVICSCGIPR+KTR+GW+SEWLRG NE VVE+LHHKP++PIRYQVICM
Sbjct: 7277 TKGG-GDKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAAVGNLPFGSTVVATARVICSCGIPRYKTRRGWVSEWLRGEGNERVVEVLHHKPKKPIRYQVICM 7378
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K548_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 7.880e-14 Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2
Query: 89 KHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELLH 334
KH P +Y L++V GA +RDG+EID A VGNL G AT R I SCG+ R+ +GWISE RG E + E++H
Sbjct: 282 KHLRWHPVQYKLRIVCQDGAIVRDGIEIDSCASVGNLEMGEIVTATDRCINSCGVMRYHIDRGWISELTRGHVREPIAEVMH 363
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3F7_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 8.750e-14 Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2
Query: 89 KHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELLH 334
KH P +Y L++V GA +RDG+EID A VGNL G AT R I SCG+ R+ +GWISE RG E + E++H
Sbjct: 282 KHLRWHPVQYKLRIVCQDGAIVRDGIEIDSCASVGNLEMGEIVTATDRCINSCGVMRYHIDRGWISELTRGHVREPIAEVMH 363
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6E7_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.420e-12 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query: 74 GGSGEKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENE 313
GGS + HP + Y L++V +GA +RDG+EID A +G+L G A R I SCG+ R++T +GW+SE RG E
Sbjct: 274 GGSSKAHPAV----YRLRIVCPEGAIVRDGIEIDSCANIGSLEMGEVVEAFDRCINSCGVLRYRTSRGWVSEQTRGHGRE 349
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPP7_FISSO) HSP 1 Score: 70.9 bits (172), Expect = 9.590e-12 Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 2
Query: 116 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 331
Y L++V +GA +RDG+EID A VGN+ G VA R I S GI R++T +GW+SE RG E + E+L
Sbjct: 1062 YKLRIVCPEGAVLRDGMEIDSCANVGNMEMGEVVVADDRCINSSGIMRYRTNRGWVSEMTRGHGREPIAEVL 1133
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHS1_FISSO) HSP 1 Score: 70.1 bits (170), Expect = 1.780e-11 Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 2
Query: 116 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 331
Y L++V +GA +RDG+EID A VGNL G VA R I S GI R++T +GW+SE RG E + E+L
Sbjct: 1062 YKLRIVCPEGAVLRDGMEIDSCANVGNLEMGEVVVAYDRCINSSGIMRYRTIRGWVSEMTRGHGREPIAEVL 1133
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV18_HETAK) HSP 1 Score: 64.7 bits (156), Expect = 1.270e-10 Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 2
Query: 122 LKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTR----KGWISEWLRGGENELVVELL 331
L+V+Y GA +R G+EID + VVG + G+ A R + + G+ R + R +GWISE +RGG+ +L+VE+L
Sbjct: 61 LRVIYEHGAVVRSGLEIDTSEVVGTVEAGAVVAALERRVNASGVARHRVRHRGAQGWISERIRGGDEQLIVEVL 134
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: HECT-type (E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC) HSP 1 Score: 65.1 bits (157), Expect = 1.010e-9 Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 2
Query: 116 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 331
+ L++V +GA +RDG+EID A VGN+ G + R + S GI R++T +GW+SE RG E + E++
Sbjct: 1158 FRLRIVCPEGAVVRDGIEIDSCATVGNMEMGEVVESFDRCVNSSGILRYRTTRGWVSEMTRGHGREPIAEIV 1229
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZL6_HETAK) HSP 1 Score: 62.4 bits (150), Expect = 8.040e-9 Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 2
Query: 116 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKG-WISEWLRGGENELVVELLHHKPREPIRYQVI 370
Y LK+V GAT+RDGV+ID A +G G ATA I R++ G WIS LR + VV++L H P +P+ Y+VI
Sbjct: 474 YHLKIVNPGGATIRDGVDIDSTASMGQCEVGEEVWATATATTREDILRYQLLGGGWISGVLRNAGRDPVVQILRHTPAQPLTYRVI 559 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig947.17503.1 >prot_E_fasciculatus_S2_contig947.17503.1 ID=prot_E_fasciculatus_S2_contig947.17503.1|Name=mRNA_E_fasciculatus_S2_contig947.17503.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp GRLRQGGGGGNGQGSGSGIGIGNQGRKRGKAPRHCARGVPAQGRVQQGRDback to top mRNA from alignment at E_fasciculatus_S2_contig947:24621..25000+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig947.17503.1 ID=mRNA_E_fasciculatus_S2_contig947.17503.1|Name=mRNA_E_fasciculatus_S2_contig947.17503.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=380bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig947:24621..25000+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig947:24621..25000+ >mRNA_E_fasciculatus_S2_contig947.17503.1 ID=mRNA_E_fasciculatus_S2_contig947.17503.1|Name=mRNA_E_fasciculatus_S2_contig947.17503.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig947:24621..25000+ (Ectocarpus fasciculatus EfasUO2)back to top |