mRNA_E_fasciculatus_S2_contig9456.17491.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT56_ECTSI) HSP 1 Score: 430 bits (1106), Expect = 1.590e-146 Identity = 268/325 (82.46%), Postives = 276/325 (84.92%), Query Frame = 1
Query: 1 MILVRLMLALAAQAVAVAGQRCGAPERLRGRSSXXXXXXXXXXXXXXXGRSSDALLFSCPTTLTPFLAVRRRKSRRAACAAGEIGDDTAPSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERISESSSEPGNSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSIQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXV-LVDGTWSQAKQILSRYPALLRRPGTVTTPAGQKVRELGASVGGVSTA 972
MILVRLMLA AAQAVAVAGQ+ GA ERLR RSS GR+SDAL F CPTTLTPFL VRRRK RRAACAA EIG+D APSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSE+DLRKALGVEVA RSPER+SE SSE NSAS PLLL+PCPGAEYLEDIAA R+QPAPS QP P XXXXXXXXXXXXXXXXXXXXXXX LVDGTWSQAKQILSRYP+LLR P T TTPAGQK RELGASVGGV A
Sbjct: 1 MILVRLMLAFAAQAVAVAGQKSGASERLRARSSSASALRLLLPPPGSAGRNSDAL-FCCPTTLTPFLTVRRRKPRRAACAAREIGND-APSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEQDLRKALGVEVAIYRSPERVSEISSERENSASTGIPLLLFPCPGAEYLEDIAASRDQPAPSAQPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDGTWSQAKQILSRYPSLLR-PTTATTPAGQKTRELGASVGGVPVA 322
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase 2 isoform X1 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A216D) HSP 1 Score: 69.3 bits (168), Expect = 9.950e-10 Identity = 67/204 (32.84%), Postives = 85/204 (41.67%), Query Frame = 1
Query: 343 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCL--ANCTRVVMRYDYSEEDLRKALGVEVARDRSPE--RISESSSEPGNSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSIQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSRYPALLRRPGTV---TTPAGQKV 933
R C RC R ++CLC LP + STR I+QHPAE + RV TVPL+ CL C R +G + DR PE + + SS LLLYP GAE LED++ S+ +L+DGTWSQAK + R ALLR P V + P+ Q V
Sbjct: 50 RPTCFRCCRPLKVCLCPYLPPRPLDVSTRLYIVQHPAE-ESRVLRTVPLLTACLPPGKC--------------RVFVGRRFSEDRYPELAAVCKDSST----------LLLYPGAGAENLEDLSTDFTATEHSV--------------------------------ILIDGTWSQAKDMFLRN-ALLRLPRQVQLRSAPSSQYV 195
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCR0_9ASTR) HSP 1 Score: 65.5 bits (158), Expect = 6.750e-9 Identity = 50/177 (28.25%), Postives = 76/177 (42.94%), Query Frame = 1
Query: 343 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERISESSSEPGNSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSIQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILS 873
R +C C R +CLC SLPAE + T+T+ VILQHP E + R+ TVP++ CL NC ++ R R LG D + +++S+ S++ L PG + PAPS++ ++ DGTW AK+++S
Sbjct: 18 RRICNACERPATVCLCDSLPAEPLSTTTQIVILQHPHEQRHRL-ATVPVLNKCLRNCQTLIGR--------RLRLGDSALLD----SLHDAASDQNPPRSIQAAFLF---PGTD-----------PAPSME-------------INRWLSSFGDTNMNKFVLIVFDGTWKHAKEMVS 154
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SH94_9SAUR) HSP 1 Score: 66.6 bits (161), Expect = 8.580e-9 Identity = 58/178 (32.58%), Postives = 74/178 (41.57%), Query Frame = 1
Query: 343 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERISESSSEPGNSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSIQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSR 876
R C RC R +++CLC LP + ST I+QHPAE + RV TVPL+ CL ED K L + R S E E +S NS + L+LYP GA LED+ +P +++DGTWSQAK I SR
Sbjct: 56 RPECGRCGRPQKVCLCPFLPVHPLNVSTCLYIIQHPAE-ENRVLRTVPLLAACLP-------------EDKCKVL---IGRRFSEEGYPELASVCRNSNT----LILYPGAGATNLEDVDLSTIEP---------------------------------YVIIIIDGTWSQAKDIFSR 179
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase n=2 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2XIG1_HIPCM) HSP 1 Score: 66.2 bits (160), Expect = 1.220e-8 Identity = 55/177 (31.07%), Postives = 77/177 (43.50%), Query Frame = 1
Query: 343 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCL--ANCTRVVMRYDYSEEDLRKALGVEVARDRSPERISESSSEPGNSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSIQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQI 867
R C RCRR ++CLC LPA+ + ST I+QHPAE + RV TVPL+ CL C ++ R +A E+A+ + S RT L+LYP P ++ LE++ E+ A + +L+DGTWSQAK I
Sbjct: 56 RPTCLRCRRPEKVCLCPFLPAQPLDVSTCLYIVQHPAE-ESRVLRTVPLLAACLPLGKCNVIIGRR------FNEAKNPELAK------VCRDS---------RT-LILYPGPNSQNLEELVQLPEEGAKTHN------------------------------IILIDGTWSQAKNI 179
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase 2 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955E9FB) HSP 1 Score: 65.5 bits (158), Expect = 2.010e-8 Identity = 58/185 (31.35%), Postives = 74/185 (40.00%), Query Frame = 1
Query: 343 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERIS---ESSSEPGNSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSIQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSRYPAL 888
R C RC R ++CLC LPA + ST I+QHPAE + RV TVPL+ CLA R +G + DR P+ + +SSS LLLYP AE LED++ +L+DGTWSQAK + R P L
Sbjct: 53 RPTCRRCCRPVKVCLCPYLPALPLDVSTSLYIVQHPAE-ESRVLRTVPLLAACLA------------PGKCRVFVGRRFSEDRYPDLAAVCRDSSS-----------LLLYPGAAAESLEDLS----------------------------------FSSATHSVILIDGTWSQAKDMFLRNPLL 179
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase (Fragment) n=3 Tax=Danionella translucida TaxID=623744 RepID=A0A553NIB7_9TELE) HSP 1 Score: 66.2 bits (160), Expect = 3.380e-8 Identity = 63/187 (33.69%), Postives = 84/187 (44.92%), Query Frame = 1
Query: 349 LCERC-RRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLA-NCTRVVMRYDYSEEDLRKALGVEVARDRSPERISESSSEPGNSASVRTP--LLLYPCPGAEYLEDIAAFREQPAPSIQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSRYPALLRR 897
+C C RR ++CLC LPA + STR I+QHPAE + RV TVPL+ CL + RV++ +SEE +A E R + S P +A + LLLYP AE LE++ + P +L+DGTWSQAK I R ALL+R
Sbjct: 489 VCVLCFRRPEKVCLCPFLPALPLDISTRLYIVQHPAE-ESRVLRTVPLLAACLPPDRCRVIVGRRFSEERCVRAWSREP-RHAQARHVVCSRRFPELAAVCKDSRTLLLYPGATAENLEELRLDSDPP---------------------------------HSLILIDGTWSQAKDIYGRN-ALLQR 639
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBE8_9ASTR) HSP 1 Score: 63.9 bits (154), Expect = 5.450e-8 Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 343 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMR 531
R +C C R +CLC SLPAE + T+T+ VILQHP E + R+ TVP++ CL NC ++ R
Sbjct: 18 RRICNACERPATVCLCDSLPAEPLSTTTQIVILQHPHEQRHRL-ATVPVLNKCLRNCQTLIGR 79
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: DTW (domain-containing protein 2 isoform X4 n=1 Tax=Strigops habroptila TaxID=2489341 RepID=UPI0011CED92A) HSP 1 Score: 63.5 bits (153), Expect = 5.820e-8 Identity = 56/188 (29.79%), Postives = 76/188 (40.43%), Query Frame = 1
Query: 343 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERISESSSEPGNSASVRTP--LLLYPCPGAEYLEDIAAFREQPAPSIQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSRYPALLRRP 900
R C RC R +++CLC LP + ST I+QHPAE + RV TVPL+ CL + + +G + DR PE +A R P L+LYP A LE+IA P+ +++DGTWSQAK I + +L R P
Sbjct: 52 RPECGRCSRPQKVCLCPFLPIHPLKVSTCLYIIQHPAE-ESRVLRTVPLLAACLP------------PDKCKILVGRRFSEDRYPEL----------AAVCRNPNTLILYPGAEATNLEEIAVMSSSPS---------------------------------VMIIIDGTWSQAKDIFYKN-SLFRLP 182
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Match: tRNA-uridine (aminocarboxypropyltransferase n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5AQN6_PARAD) HSP 1 Score: 63.5 bits (153), Expect = 6.760e-8 Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = 1
Query: 343 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERISESSSEPGNSA------------SVRTPLLL 663
R +C C R +CLC +LPA+ +PT+T+ +IL HP E + +++ T P++ CLAN T + R R G+ D+SP I S P + A S R PL+L
Sbjct: 23 RPICPNCARPSPVCLCHTLPAQPIPTTTQVIILHHPHEAQHKLS-TTPILTRCLANSTAITGR--------RLRQGLSPLLDQSPPAIYLFPSTPASPAVNLSQLVDEPIWSKRAPLVL 132 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9456.17491.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9456.17491.1 >prot_E_fasciculatus_S2_contig9456.17491.1 ID=prot_E_fasciculatus_S2_contig9456.17491.1|Name=mRNA_E_fasciculatus_S2_contig9456.17491.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=351bp MILVRLMLALAAQAVAVAGQRCGAPERLRGRSSSSSALRLLLPPPGSAGRback to top mRNA from alignment at E_fasciculatus_S2_contig9456:2994..5983+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9456.17491.1 ID=mRNA_E_fasciculatus_S2_contig9456.17491.1|Name=mRNA_E_fasciculatus_S2_contig9456.17491.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2990bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9456:2994..5983+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9456:2994..5983+ >mRNA_E_fasciculatus_S2_contig9456.17491.1 ID=mRNA_E_fasciculatus_S2_contig9456.17491.1|Name=mRNA_E_fasciculatus_S2_contig9456.17491.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1053bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9456:2994..5983+ (Ectocarpus fasciculatus EfasUO2)back to top |