mRNA_E_fasciculatus_S2_contig9456.17490.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9456.17490.1
Unique NamemRNA_E_fasciculatus_S2_contig9456.17490.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: ARL8, (ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT57_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.880e-40
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:  216 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ
Sbjct:    1 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 70
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: AlNc14C187G8338 (protein n=34 Tax=Oomycota TaxID=4762 RepID=F0WPJ3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.110e-33
Identity = 57/71 (80.28%), Postives = 66/71 (92.96%), Query Frame = 3 
Query:  213 IMGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            IMGA  Q+ML AFYT++LEVVLVGLENSGKTTL+NV+A GHPV+T PTIGLNVK++K+GGVQMKCWDIGGQ
Sbjct:   33 IMGAILQKMLQAFYTKKLEVVLVGLENSGKTTLLNVMAMGHPVETCPTIGLNVKLVKKGGVQMKCWDIGGQ 103
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA37_AURAN)

HSP 1 Score: 117 bits (292), Expect = 1.880e-30
Identity = 53/70 (75.71%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:  216 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            MGA F ++L AFY ++LEVVLVGLENSGKTTL+NVLA+G PV+T PTIGLNVK++++GGVQMKCWDIGGQ
Sbjct:    1 MGAIFTKLLDAFYNKKLEVVLVGLENSGKTTLLNVLAAGRPVETCPTIGLNVKLVRKGGVQMKCWDIGGQ 70
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSV3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.480e-30
Identity = 52/70 (74.29%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:  216 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            MGA  QRML +FYT++LEVVL+GLENSGKTTL+NVLA G P++TVPTIGLNVK++K+GG+QM CWD+GGQ
Sbjct:    1 MGALLQRMLDSFYTKKLEVVLIGLENSGKTTLLNVLAHGAPMETVPTIGLNVKLVKQGGIQMHCWDLGGQ 70
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: Arf/Sar (family, other n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIT1_PYTIN)

HSP 1 Score: 121 bits (303), Expect = 1.090e-29
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:  216 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            MG   Q+ML AFYT++LEVVLVGLENSGKTTL+NV+A GHPV+T PTIGLNVK++K+GGVQMKCWDIGGQ
Sbjct:    1 MGGILQKMLQAFYTKKLEVVLVGLENSGKTTLLNVMAMGHPVETCPTIGLNVKLVKKGGVQMKCWDIGGQ 70
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: Adp-ribosylation (factor family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AND5_PLAHL)

HSP 1 Score: 121 bits (303), Expect = 1.290e-29
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:  216 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            MG   Q+ML AFYT++LEVVLVGLENSGKTTL+NV+A GHPV+T PTIGLNVK++K+GGVQMKCWDIGGQ
Sbjct:    1 MGGILQKMLQAFYTKKLEVVLVGLENSGKTTLLNVMAMGHPVETCPTIGLNVKLVKKGGVQMKCWDIGGQ 70
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4S7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.030e-29
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:  216 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            MG   QRM  AFYT++LEVVLVG+ENSGKTTL++VLA+G PV+T PTIGLNVK++++GGVQMKCWDIGGQ
Sbjct:    1 MGQLLQRMFDAFYTKKLEVVLVGIENSGKTTLLSVLANGAPVETCPTIGLNVKLVRKGGVQMKCWDIGGQ 70
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSV8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.030e-29
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:  216 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            MGA   ++L  FY ++LEVVLVGLENSGKTTL+NVLA+G PV+T PTIGLNVK++++GGVQMKCWDIGGQ
Sbjct:    1 MGAFLTKLLDTFYAKKLEVVLVGLENSGKTTLLNVLAAGRPVETCPTIGLNVKLVRKGGVQMKCWDIGGQ 70
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: Arl8 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812THX3_SYMMI)

HSP 1 Score: 112 bits (280), Expect = 1.280e-28
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:  216 MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            MG  FQR+L+  +T++LEVVLVGLENSGKTTL+ VL+ G P +T PTIGLNVKM+KRGGVQMKCWD+GGQ
Sbjct:    1 MGNVFQRLLNMLFTKKLEVVLVGLENSGKTTLLQVLSDGSPTETAPTIGLNVKMVKRGGVQMKCWDLGGQ 70
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BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Match: Aste57867_19416 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCR6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.190e-28
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 3 
Query:  171 LLYEEGEPWRRNQSIMGAAFQRMLSAFYTRQLEVVLVGLEN------------------SGKTTLMNVLASGHPVDTVPTIGLNVKMIKRGGVQMKCWDIGGQ 425
            L  E+       + IMG   QRML AFYT++LEVVLVGLEN                  +GKTTL+NV+A GHPV+T PTIGLNVK++K+GGVQMKCWDIGGQ
Sbjct:   21 LTPEDSREKASQRRIMGGILQRMLQAFYTKKLEVVLVGLENRYGVLADYAPVEERHLDDAGKTTLLNVMAMGHPVETCPTIGLNVKLVKKGGVQMKCWDIGGQ 123
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9456.17490.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ARL8,1.880e-40100.00ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus... [more]
AlNc14C187G83386.110e-3380.28protein n=34 Tax=Oomycota TaxID=4762 RepID=F0WPJ3_... [more]
Uncharacterized1.880e-3075.71protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Hypothetical3.480e-3074.29protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Arf/Sar1.090e-2978.57family, other n=2 Tax=Pythium insidiosum TaxID=114... [more]
Adp-ribosylation1.290e-2978.57factor family n=1 Tax=Plasmopara halstedii TaxID=4... [more]
Hypothetical2.030e-2974.29protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical9.030e-2972.86protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Arl81.280e-2872.86protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Aste57867_194163.190e-2856.31protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9456contigE_fasciculatus_S2_contig9456:579..2513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score142.9
Seed ortholog evalue5.7e-32
Seed eggNOG ortholog2880.D7FT57
Preferred nameARL8B
Model size427
KEGG koko:K01197,ko:K07955,ko:K07977
KEGG ReactionR07824,R07825,R10905
KEGG Pathwayko00531,ko01100,map00531,map01100
KEGG ModuleM00076,M00077
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000306,GO:0000323,GO:0000819,GO:0001666,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005819,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006928,GO:0006950,GO:0006955,GO:0006996,GO:0007017,GO:0007018,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0008088,GO:0008092,GO:0008150,GO:0008333,GO:0009628,GO:0009987,GO:0010008,GO:0010970,GO:0012505,GO:0012506,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019898,GO:0022402,GO:0030141,GO:0030496,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031312,GO:0031410,GO:0031902,GO:0031982,GO:0032418,GO:0032419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0035577,GO:0035639,GO:0036094,GO:0036230,GO:0036293,GO:0042119,GO:0042582,GO:0043014,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0046903,GO:0046907,GO:0048487,GO:0048786,GO:0050896,GO:0051179,GO:0051233,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0070482,GO:0070820,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0098813,GO:0098852,GO:0099111,GO:0099503,GO:0101002,GO:0101003,GO:1901265,GO:1901363
Exons3
EggNOG free text desc.Belongs to the small GTPase superfamily. Arf family
EggNOG OGsCOG1100@1,KOG0075@2759
EC3.2.1.35
Cds size210
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko00537,ko01000,ko02042,ko04031,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.8890085-CDS-E_fasciculatus_S2_contig9456:578..6291696842593.8890085-CDS-E_fasciculatus_S2_contig9456:578..629Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9456 579..629 -
1696842593.902876-CDS-E_fasciculatus_S2_contig9456:1107..11631696842593.902876-CDS-E_fasciculatus_S2_contig9456:1107..1163Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9456 1108..1163 -
1696842593.921467-CDS-E_fasciculatus_S2_contig9456:2195..22981696842593.921467-CDS-E_fasciculatus_S2_contig9456:2195..2298Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9456 2196..2298 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.9323287-UTR-E_fasciculatus_S2_contig9456:2298..25131696842593.9323287-UTR-E_fasciculatus_S2_contig9456:2298..2513Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9456 2299..2513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9456.17490.1prot_E_fasciculatus_S2_contig9456.17490.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9456 579..2298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9456.17490.1

>prot_E_fasciculatus_S2_contig9456.17490.1 ID=prot_E_fasciculatus_S2_contig9456.17490.1|Name=mRNA_E_fasciculatus_S2_contig9456.17490.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=70bp
MGAAFQRMLSAFYTRQLEVVLVGLENSGKTTLMNVLASGHPVDTVPTIGL
NVKMIKRGGVQMKCWDIGGQ
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mRNA from alignment at E_fasciculatus_S2_contig9456:579..2513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9456.17490.1 ID=mRNA_E_fasciculatus_S2_contig9456.17490.1|Name=mRNA_E_fasciculatus_S2_contig9456.17490.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1935bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9456:579..2513- (Ectocarpus fasciculatus EfasUO2)
CTTCTCTCTTGTTCCAGCCAGCACTCAACACCCTGTGCCCAACCGCAGCT
GTGAACACAAATCCTTTGTGTGTGGGCAGCCTGAGGATTGTGGGTTGGTG
ACACCAGGGTTGCTGCGATAACCGAGCACGTTGGAGAGCCGGCACGTAGA
TAAATCCCGCGGCGGCGCTACTGCTGTACGAGGAGGGAGAGCCTTGGAGA
CGAAATCAATCAATCATGGGGGCCGCCTTCCAGCGCATGCTCTCGGCGTT
CTACACGCGACAGCTGGAAGTGGTGCTGGTCGGTCTGGAGAACAGCGGAA
AGACGACCTTGATGAATGGTGAGCGCACAGCAAGTGCTTGCTTGGTACAT
ACATAAGGATTCGTCAAGAGAGACGGACACCTGTATAATCGCCCTTGATG
CAGGGACAGAACCCGTTGTGGAGTAGAGCGGTACAATCGTGGCCTGTGGT
GTTATCTTACACCGCCAGAGTACCCATGCAACCATGGGAGATGCCAAGCT
TCGATCAGCGTTTACTTTATTCACCCGGCGCTTGCAGTCATCCCATCGAC
AAAGCTACAACCTTTTCAGCAAATTTGTGCGGCGAGACTTTCAACACTTG
AAGCCAGTGCGGCGAGATTCCACGCTCTGGCGCGGGGAAGTAACCACATG
GTAGGCCAGTCGAGAAGAAAACAAGAAAATCGCGCGGTACAGTGTACTCA
CTCAGCGCTGCCACCGCTAGGCAAGTCCACGAAATAGCATTGGACAGCAC
AAGATCATCGATCGCGCAGGGCTTTGAACAAGTCACGGATTAAGAAATTG
CCTCCTTTCGACGTTATGCATACAATGAAAGCGTACACCGCATGGAACTT
GCGTTCGGCAATCGGCAGGGTAGTGAGCACGAGGGGAGGTAGTGCGTAGT
GCGTGCAGTGACACCCTCGGGTTCCGAGGGACTTGAAAATTTCGGGAAGA
GAGAACGAACAGGCGTTACCGGGTTACGAGACCAACCCCGTGCCGTTTCC
TACGCATAGGAAAAGCAATACTAAATAGACGTACTGTGTAGCGTAGGTTT
TCCTTGAAATGTTGCGTGCGGAAGGGAGCAGTTACAGGGCTAGTGCGGTG
CTGCTTTCGTCGTGAACGGTCCTCTAGGCTTGCTTTCTCGTGTACTCCTA
TGTTCGTTCGTACACAGCTGCTGCTGTATGTCTACGGCGACAGTACGGTG
ATACATACATTACAGTAGTGCAAGGTCGAAAGGGGCACATTGCGCCTTGT
CTTTGCCGACTTCACCACCCTAGGTCCATTCCGAACGCCTCATGTTCACC
TCCGTGTGTTCGTGCAATGCCGCTGTTGCGTTTCGTTCGCTCCGCCCCAG
TGCTCGCTAGCGGCCATCCGGTGGACACGGTTCCGACCATCGGGCTCAAC
GTCAAGGTGCAGTTGTCATGGCCCTTCTTTCCCCCTGTAGTGGCGATTGT
CAGCCATTCGCTTTAGTTGGTGGTCAGCGAATCTGGTGACATCGGTACAG
CGCTTGCGCAAATGGCGATATAAATATTTTTGGCGTTTAGCCTTGTGATG
CGGCGCAATCACACGCGCGAGAAAGGAGCTTACAAACGCACCTCGTGCGA
CTCTGACGTCAACACGCGCCGCGTTCCATCACTTCCCGACCTCGTGGTGT
CGCCAGGCTGTGTGCATTTCCTGGTACAAAGTTGTTTCGAGTCGGGCATA
TCAGTCCAACCCAGCCAATGTTTCACCCAGATGTGAATGTTGACGCAAGT
TTTGACTGCGCGGCAAATGCGGATGAATGTCTTCCCTCATCTTAACAAGG
TTTGGCTTGCAACAGCAGGTGGTGCGCGCTCGTCGTTCAAATGCAAACTG
ACCCACCCCCCCGGACGGAAAAAAAAAAAAACAGATGATCAAGCGGGGCG
GGGTGCAAATGAAGTGCTGGGACATCGGGGGACAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9456:579..2513-

>mRNA_E_fasciculatus_S2_contig9456.17490.1 ID=mRNA_E_fasciculatus_S2_contig9456.17490.1|Name=mRNA_E_fasciculatus_S2_contig9456.17490.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9456:579..2513- (Ectocarpus fasciculatus EfasUO2)
ATGGGGGCCGCCTTCCAGCGCATGCTCTCGGCGTTCTACACGCGACAGCT
GGAAGTGGTGCTGGTCGGTCTGGAGAACAGCGGAAAGACGACCTTGATGA
ATGTGCTCGCTAGCGGCCATCCGGTGGACACGGTTCCGACCATCGGGCTC
AACGTCAAGATGATCAAGCGGGGCGGGGTGCAAATGAAGTGCTGGGACAT
CGGGGGACAG
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