mRNA_E_fasciculatus_S2_contig944.17478.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig944.17478.1
Unique NamemRNA_E_fasciculatus_S2_contig944.17478.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig944.17478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE0_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.020e-63
Identity = 105/125 (84.00%), Postives = 113/125 (90.40%), Query Frame = 1 
Query:  961 QGDRVSEDADGATGTTGIPGGDASGPSALFPDEVDFDDEEEPRDILAVCKLGDKLGIAAYREAVNAIDIQEIHAFNSDMGDTMEGIKLLVRPRLILTDLTMTTNPALFDMVVAPLLEGGDPIEYK 1335
            QGDR  EDA+GA GTT  P G ASG  A  PD++DFDD+E+PRDILA+CKLGDKLGIAAYREA+NAIDIQEIHAFNSDMGDTMEGIKLLVRPRLILTDL MTTNPALFD+VVAPLLEGGDPIEYK
Sbjct:   10 QGDRSGEDANGARGTTTQPAGGASGSGAQLPDDIDFDDDEDPRDILAICKLGDKLGIAAYREAINAIDIQEIHAFNSDMGDTMEGIKLLVRPRLILTDLAMTTNPALFDIVVAPLLEGGDPIEYK 134
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig944.17478.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.020e-6384.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig944contigE_fasciculatus_S2_contig944:13762..16258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1339
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005850.1
Cds size1338
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842592.6150334-CDS-E_fasciculatus_S2_contig944:13761..147011696842592.6150334-CDS-E_fasciculatus_S2_contig944:13761..14701Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 13762..14701 +
1696842592.6318629-CDS-E_fasciculatus_S2_contig944:14987..151841696842592.6318629-CDS-E_fasciculatus_S2_contig944:14987..15184Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 14988..15184 +
1696842592.6488683-CDS-E_fasciculatus_S2_contig944:15365..154071696842592.6488683-CDS-E_fasciculatus_S2_contig944:15365..15407Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 15366..15407 +
1696842592.6584988-CDS-E_fasciculatus_S2_contig944:16099..162581696842592.6584988-CDS-E_fasciculatus_S2_contig944:16099..16258Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 16100..16258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig944.17478.1prot_E_fasciculatus_S2_contig944.17478.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig944 13762..16258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig944.17478.1

>prot_E_fasciculatus_S2_contig944.17478.1 ID=prot_E_fasciculatus_S2_contig944.17478.1|Name=mRNA_E_fasciculatus_S2_contig944.17478.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=446bp
HLLDLFDGGSALIDLWYCWVSDHYIRCLVSTPVYPSLQYNYFATECQQDK
MDDTPQSPMMEDNGSVHYRSNQAGKDDTALRPSPNRTIGGSSHHPTQSSE
ASSPTGDAMLQAGVGQQRHLHHTPHRHQQYNQQGYFASRLPTNDGVTTPT
SLALGMSPPAGALRGGGDDYMPEEPDVQGQHRYSRPQQSQQHMQEQAAFD
AGSLMSLSMSPLAYPTSGGSRGGGGYLLDMTNSRQGQPPPPQQQQQQPQQ
STVNSVIEEVAARRSVRSSSQQQSRNNETARRGTPTNDNRRAVTEPRLLW
SDLDADGPSSPATARNRRAAQGDRVSEDADGATGTTGIPGGDASGPSALF
PDEVDFDDEEEPRDILAVCKLGDKLGIAAYREAVNAIDIQEIHAFNSDMG
DTMEGIKLLVRPRLILTDLTMTTNPALFDMVVAPLLEGGDPIEYK*
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mRNA from alignment at E_fasciculatus_S2_contig944:13762..16258+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig944.17478.1 ID=mRNA_E_fasciculatus_S2_contig944.17478.1|Name=mRNA_E_fasciculatus_S2_contig944.17478.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2497bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig944:13762..16258+ (Ectocarpus fasciculatus EfasUO2)
CACCTTCTGGATCTCTTTGACGGGGGTTCGGCGTTGATTGACCTATGGTA
TTGCTGGGTGAGTGATCACTACATCCGCTGTCTAGTTTCCACCCCCGTGT
ACCCGTCGCTCCAATACAACTATTTTGCTACTGAATGCCAGCAGGACAAA
ATGGACGACACACCCCAGAGCCCCATGATGGAAGATAACGGGTCTGTTCA
TTACCGCTCCAACCAAGCGGGGAAGGATGACACCGCCTTGCGCCCCTCCC
CGAACCGCACGATCGGTGGCAGTTCGCATCATCCTACACAGTCCTCCGAA
GCATCTTCTCCAACTGGAGACGCGATGCTCCAGGCGGGGGTAGGACAGCA
ACGTCACCTCCATCACACGCCTCATCGCCACCAGCAGTACAACCAGCAAG
GATACTTCGCGAGTCGTCTCCCGACGAACGACGGCGTAACAACTCCGACG
AGCCTCGCTCTGGGCATGTCCCCCCCTGCTGGGGCCCTCCGCGGCGGCGG
TGACGACTACATGCCAGAAGAGCCGGACGTTCAAGGACAGCATCGTTACA
GCCGTCCGCAACAGTCTCAGCAGCATATGCAGGAGCAGGCTGCATTCGAT
GCCGGAAGCCTGATGAGTTTGAGCATGTCTCCCCTCGCCTACCCCACCAG
TGGTGGTAGTCGTGGCGGTGGTGGGTATTTACTCGATATGACCAATTCTC
GACAAGGCCAGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCACAACAG
TCTACCGTCAACTCGGTGATTGAAGAGGTGGCAGCGCGTCGGTCGGTGCG
GTCGAGTTCGCAGCAGCAGAGTAGGAACAACGAAACCGCGCGCCGGGGGA
CGCCCACGAACGACAACCGGCGGGCCGTGACGGAGCCGAGGCTCCTGTGG
TCGGACCTGGATGCTGATGGGCCCAGTTCTCCTGCTACAGGTAAAACGAG
ACGGCAGGAAGTCGGTTGTGGACAACACGTTTGGCGCAATAGCTCGTTCA
TGGGGTAATTCTGTGGCAAGTGGTGTGAGCGTGCGGGTTGCAAAGAAGTA
CATGCGCACCATTACGATTGTCTTCTCTTCAGGAGCCGAAGTACGTGCTA
GCAACGGCTCTGAGAAGTCAGTCTATCAAGGCTCAGCTCTCATTTTTCGC
ACTAGAGGTCAACGCTATTCCGGTCGCCGTTGGGACGCGCCGATCTATGC
CCTAATTTCGATGTGAAATTCACAAGCACGAAATCGGCGAGCAGCACAGG
GAGACAGGGTCAGTGAGGATGCGGATGGAGCAACAGGTACGACCGGAATT
CCAGGAGGAGATGCAAGTGGTCCGAGTGCGCTGTTTCCCGACGAAGTTGA
TTTCGACGACGAAGAAGAACCACGGGACATCCTCGCTGTATGCAAGCTGG
GGGACAAGCTCGGTATCGCGGCAGTGAGTCACGTATTCGTACCGGTAGAG
ATTCTGACGGTAATGATGAGGACTGGCGCCCTTACCATATTGTGCACCTT
CCAGTTCTTCCCAACGCTGAGCGTGGTCACCGAATTCCTTACCCCGCTCA
CACACAATTTCTCTTCCTCTCTTCCCTGTTCGCTTGCTGGCCATCGTCTT
CAAGTATCGTGAGGCGGTCAACGCCATCGACATTCAGGAGATCCACGTGA
GAAGTATCAAACACCGTTTGTATCGGGTGGTGCTTGGCTTGTGTAAAAGA
AGCACACGGTAGCCCAATAGCGTAAGGCTCCCATTACAGTGCAAGGCGAA
AATTTAGTCCTGAGCGGAGAGGAAGGATTGTTTCGGGTGCGTTAACGTGT
GCTTCGTGCCAGTCCTTAAGTGACACCCGTTGCCCGGACCGGATGCCCAT
CTTGGACTGAATGAATATGTAACAGCTTGTCTCCAGCTCAAACACCGAGT
GGAAATGAACTCACCAAGTGTGAAACTGCGGCGGTGAATGATAACACCGT
GGATTTCCATTGAGAAAGACCCCGCCTGACGAAGGCAGTTGCGACGGGAG
TGAATCAGTGTCAAGCACCGTGGTGTTCTCGTCATTCGACGTCGAGATAC
ATGCGTGCATGCACCCAATTTCACTTGTTTTCACCAGCGCCACCGTCCCG
TACCAGCCACAAGCCCCCCCCCCGTACTACTCTCGTGTTTCCTCAAAATT
CAATGTGAAGCCAAAATCCGTTGTGTTTCAATCGTCGACCCTCGCACGGT
TGTAATATGAGTGGACTAGGGCTTGTCCATGTGAGGGTCGACATGCTGGG
ACTATGGCTGTTCACGCAGCAAACGTGACGGGGAGTTCCGTTCTCCATGA
TGCCTCATGACCTTCGGTGATGCTGTGCGGCTGTTCAGGCCTTCAACTCG
GACATGGGTGACACCATGGAAGGCATCAAGCTGCTAGTACGCCCGCGCCT
GATCCTGACTGATTTGACCATGACCACCAATCCGGCTTTGTTCGACATGG
TGGTGGCTCCGCTTCTTGAAGGGGGCGACCCCATCGAATACAAGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig944:13762..16258+

>mRNA_E_fasciculatus_S2_contig944.17478.1 ID=mRNA_E_fasciculatus_S2_contig944.17478.1|Name=mRNA_E_fasciculatus_S2_contig944.17478.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1338bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig944:13762..16258+ (Ectocarpus fasciculatus EfasUO2)
CACCTTCTGGATCTCTTTGACGGGGGTTCGGCGTTGATTGACCTATGGTA
TTGCTGGGTGAGTGATCACTACATCCGCTGTCTAGTTTCCACCCCCGTGT
ACCCGTCGCTCCAATACAACTATTTTGCTACTGAATGCCAGCAGGACAAA
ATGGACGACACACCCCAGAGCCCCATGATGGAAGATAACGGGTCTGTTCA
TTACCGCTCCAACCAAGCGGGGAAGGATGACACCGCCTTGCGCCCCTCCC
CGAACCGCACGATCGGTGGCAGTTCGCATCATCCTACACAGTCCTCCGAA
GCATCTTCTCCAACTGGAGACGCGATGCTCCAGGCGGGGGTAGGACAGCA
ACGTCACCTCCATCACACGCCTCATCGCCACCAGCAGTACAACCAGCAAG
GATACTTCGCGAGTCGTCTCCCGACGAACGACGGCGTAACAACTCCGACG
AGCCTCGCTCTGGGCATGTCCCCCCCTGCTGGGGCCCTCCGCGGCGGCGG
TGACGACTACATGCCAGAAGAGCCGGACGTTCAAGGACAGCATCGTTACA
GCCGTCCGCAACAGTCTCAGCAGCATATGCAGGAGCAGGCTGCATTCGAT
GCCGGAAGCCTGATGAGTTTGAGCATGTCTCCCCTCGCCTACCCCACCAG
TGGTGGTAGTCGTGGCGGTGGTGGGTATTTACTCGATATGACCAATTCTC
GACAAGGCCAGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCACAACAG
TCTACCGTCAACTCGGTGATTGAAGAGGTGGCAGCGCGTCGGTCGGTGCG
GTCGAGTTCGCAGCAGCAGAGTAGGAACAACGAAACCGCGCGCCGGGGGA
CGCCCACGAACGACAACCGGCGGGCCGTGACGGAGCCGAGGCTCCTGTGG
TCGGACCTGGATGCTGATGGGCCCAGTTCTCCTGCTACAGCACGAAATCG
GCGAGCAGCACAGGGAGACAGGGTCAGTGAGGATGCGGATGGAGCAACAG
GTACGACCGGAATTCCAGGAGGAGATGCAAGTGGTCCGAGTGCGCTGTTT
CCCGACGAAGTTGATTTCGACGACGAAGAAGAACCACGGGACATCCTCGC
TGTATGCAAGCTGGGGGACAAGCTCGGTATCGCGGCATATCGTGAGGCGG
TCAACGCCATCGACATTCAGGAGATCCACGCCTTCAACTCGGACATGGGT
GACACCATGGAAGGCATCAAGCTGCTAGTACGCCCGCGCCTGATCCTGAC
TGATTTGACCATGACCACCAATCCGGCTTTGTTCGACATGGTGGTGGCTC
CGCTTCTTGAAGGGGGCGACCCCATCGAATACAAGTAA
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