mRNA_E_fasciculatus_S2_contig941.17456.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig941.17456.1
Unique NamemRNA_E_fasciculatus_S2_contig941.17456.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig941.17456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F3_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 7.470e-48
Identity = 131/304 (43.09%), Postives = 163/304 (53.62%), Query Frame = 1 
Query:  166 LMSQVPLATEWWPLEENLVARGGGSPLHLFEPEERREVEPGAYIFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFS-EGANRVGAASPSSSAAADVAFLRGLDLKGLIAKGASEAHVRRLMVSPATATPGGSDEGGHPPYDESYQPTPATLIADLKAAANFESDIADLNNDGSRGPLPYVKTGADTM-DEVHEDENEQYIFSTPEELAEE--ELEEEHV-PGLD--------CREFHARSIAVHAALKQYVLNQRVFFVLIHTGRWVDVELPEYPMSTDVLLMALGVSRATGNLVGVIS 1038
            ++ + P +  WWPLEE+  ARG   P++ F  +   E E                                       LF+ +G +     + S    ADV FLRGL+L+GL A GA+ A +RR MVSPA        +     YDE   PTPATL+ADLKA  NF+S I D+++DGS  PLPY+        DEVHED+  QYIF+T E+LAE   E E E V P  D         RE   RS A   ALKQYVL QRVF+VLIHT R  D EL +  MS+DV+L+ALGVS ATGNLVGVI+
Sbjct:   15 VLPEDPPSPTWWPLEESFTARGRRLPIYTFASQFAGEHE-------------------------------------LVLFNGDGNDDQNREALSPEQVADVDFLRGLNLQGLEAGGAATAPLRRFMVSPAXXXXXXXKKSR---YDEDNLPTPATLVADLKATGNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSEDLAEAIAEAESEVVDPEADEGDMGAEAYREMTLRSRAQLTALKQYVLKQRVFYVLIHTDRRHDAELADKDMSSDVILLALGVSPATGNLVGVIA 278
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BLAST of mRNA_E_fasciculatus_S2_contig941.17456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG80_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.710e-24
Identity = 86/223 (38.57%), Postives = 107/223 (47.98%), Query Frame = 1 
Query:  538 MVSPATATPGGSDEGGHPPYDESYQPTPATLIADLKAAANFESDIADLNNDGSRGPLPYVKTGADTM-DEVHEDENEQYIFSTPEELAEEELEEE-HVPGLDCRE------------------------------------------------------FHARSIAVHAALKQYVLNQRVFFVLIHTGRWVDVELPEYPMSTDVLLMALGVSRATGNLVGVIS 1038
            MVSPA A  GG  +     YDE   PTPATL+ADLK A NF+S I D+++DGS  PLPY+        DEVHED+  QYIF+T   LAE   EEE  V  ++  E                                                          S A   ALKQ+VL +RVF+VLI   R    +  +  MS+DV+L+A+GVS ATGNLVGVI+
Sbjct:    1 MVSPAAAAAGGGKKSR---YDEDNLPTPATLVADLKEARNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSRGLAEAISEEESEVVDVEADEGDMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGEIALGSRAQLTALKQHVLKRRVFYVLIRADRRQYADPDDEDMSSDVILLAMGVSPATGNLVGVIA 220
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BLAST of mRNA_E_fasciculatus_S2_contig941.17456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUI1_PORUM)

HSP 1 Score: 63.2 bits (152), Expect = 1.910e-7
Identity = 63/194 (32.47%), Postives = 93/194 (47.94%), Query Frame = 1 
Query:  454 AADVAFLRGLDLKGLIAKGASEAHVRRLMVSPATATPGGSDEGGHPPYDESYQPTPATLIADLKAAANFESDIADLNNDGSRGP-LPYVKTGADTMDEVHEDENEQYIFST-PEELAEEELEEEHVPGLDCREFHARSIAVHAALKQYVLNQRVFFVLIHTGRWVDVELPEYPMSTDVLLMALGVSRATGNLVG 1029
            AADVAFLR   L      G  +  +   +  PA             P+     PT A ++ADL    NF + +  +  D    P +P         D++H +  +QY+F T P E+    ++EE +PG+        SI    AL+ YV+++ V+FV++HT     V   E+P    VLL A+GVS A+GNLVG
Sbjct:   53 AADVAFLRSWALPDECHYGNPQVGMSPFIAEPAVR-----------PHSVGL-PTAAEVLADL-LVDNF-AGLPGVALDTVDPPFVPKADPMVTGADQIHTNGIKQYMFCTEPVEVVPYGVQEEDLPGMQA------SIDALDALRSYVVDRHVYFVVVHTPL---VGQEEFPFPNLVLLWAVGVSPASGNLVG 223
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BLAST of mRNA_E_fasciculatus_S2_contig941.17456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6DF08_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 1.200e-6
Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 1 
Query:  616 TPATLIADLKAAANFESD-IADLNNDGSRGPLPYVKTGADTMDEVHEDENEQYIFSTPEELAEEELEEEHVPGLDCREFHARSIAVHAALKQYVLNQRVFFVLIHTGRWVDVELP--EYPMSTDVLLMALGVSRATGNLVGVIS 1038
            T A ++++L+   NF+++ I D   D ++ P P    G +  DE+H D  +QY+F+   E++      +H+      +    S   H+AL+ YVL+  +F++LIH     D   P  ++  S  VLL ALGVS ATGNLVG +S
Sbjct:   82 TAAVVLSELRIT-NFQTEHINDF--DSTQIPYPGYHPGTEN-DEIHTDRGKQYMFAP--EMS------DHLDTDFTGKNADLSRVSHSALRSYVLSHHLFYILIH-----DKPKPYEDFMFSQLVLLFALGVSPATGNLVGAVS 208
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig941.17456.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized7.470e-4843.09protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.710e-2438.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.910e-732.47protein n=1 Tax=Porphyra umbilicalis TaxID=2786 Re... [more]
Uncharacterized1.200e-634.72protein n=1 Tax=Proteobacteria bacterium TaxID=197... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig941contigE_fasciculatus_S2_contig941:17107..20036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1943
Hectar predicted targeting categoryother localisation
Exons2
Cds size918
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842590.4685128-UTR-E_fasciculatus_S2_contig941:17106..172011696842590.4685128-UTR-E_fasciculatus_S2_contig941:17106..17201Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig941 17107..17201 +
1696842590.484933-UTR-E_fasciculatus_S2_contig941:18188..182611696842590.484933-UTR-E_fasciculatus_S2_contig941:18188..18261Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig941 18189..18261 +
1696842590.5057325-UTR-E_fasciculatus_S2_contig941:19179..200361696842590.5057325-UTR-E_fasciculatus_S2_contig941:19179..20036Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig941 19180..20036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842590.4945507-CDS-E_fasciculatus_S2_contig941:18261..191791696842590.4945507-CDS-E_fasciculatus_S2_contig941:18261..19179Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig941 18262..19179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig941.17456.1prot_E_fasciculatus_S2_contig941.17456.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig941 18262..19179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig941.17456.1

>prot_E_fasciculatus_S2_contig941.17456.1 ID=prot_E_fasciculatus_S2_contig941.17456.1|Name=mRNA_E_fasciculatus_S2_contig941.17456.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=306bp
MSQVPLATEWWPLEENLVARGGGSPLHLFEPEERREVEPGAYIFPEWVPS
FDSLFVEGSGTPIYTFESQFGPDQEPGLFSEGANRVGAASPSSSAAADVA
FLRGLDLKGLIAKGASEAHVRRLMVSPATATPGGSDEGGHPPYDESYQPT
PATLIADLKAAANFESDIADLNNDGSRGPLPYVKTGADTMDEVHEDENEQ
YIFSTPEELAEEELEEEHVPGLDCREFHARSIAVHAALKQYVLNQRVFFV
LIHTGRWVDVELPEYPMSTDVLLMALGVSRATGNLVGVISQSNVVTTCVT
RWSVL*
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mRNA from alignment at E_fasciculatus_S2_contig941:17107..20036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig941.17456.1 ID=mRNA_E_fasciculatus_S2_contig941.17456.1|Name=mRNA_E_fasciculatus_S2_contig941.17456.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2930bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig941:17107..20036+ (Ectocarpus fasciculatus EfasUO2)
GGGAAGACTGCAGGTGCTGGCATGCTGGTGCTGCCGCCCCCACAGGTTCT
GCTTGCTAGCCGGGTGGGCTTCATCCCACCGATTCAACCCAGCAGGTGAA
TGAGGCACAGGCACCCTGGACCTATTTTTGATTGTTCCACCTCGCCGTGT
GCAGTGTGATAGCGGTGTGCCCGAGTCTTGCTACTACAGTAAGTAGCACT
TGGACACATAGGGCGAAAAGAGAAAAAACGGTGGGTCGCCCGCCCACCGA
GTGAGGCCGTTTTCAAACGCGGGGAAACTTAATTATTTTGGTTCAAAACA
ACGCAGAACGTGTGACCCTACGAATCCCGAAATGACAGCAAGTTTGCAAG
TGCCGGATCACCTCATCGGCGCAGGTTACCGATGGAGATCCAACTGCAAG
TTCGACAATCTATGGGTCATGCATACACTTCGAATATTTGGAGGAAATTG
AAAAAGTTGACTGATGGTTGCTCGCCAGCAGAAATCGTGTGCAACGTAGG
CAGACACAGCAGTTGGGCTGTCCAATGCAACATCAGCAGACATGCAAGAA
AGATGCAAAGAATGGAGAGCATTCCACATCAAAGGGCAGAAACATAGAAG
AGTTGATAACTGACTTGAGCACACACCCTTACACACCATGAAAAATGCGC
ACGGTTTACATTTTGTGCGGCATAAGAAACTTGCCGAGCAACAGCAGAAA
CGATTGCTCGCAGTTCCCCTCGAGCACACCAATAATGTGCTCAAACGCTT
TGGTGGCGGCCCGGCGCGGTATCGGCAGCGAGAGATTCAGCAACAAGCCC
CCGTCATCACAGGGGGTGCTGTGGTTCCTGCGATGACCGGGATGCATGCC
CCATCCATGTGGTTTGGCAGGCATTGTTGGTTGATCGTATGATAGATAAA
ACCCCCACGTTCGTGCAAACCAAGCTCGCCAAAACTTTATACTGTGAGGA
TCGAATACAAAACATTGTACTGAACGCTCGTTCTTTTTTGTGTAATCTTA
CGTGTAGCCGTGTGTTCCTTGTTCTCCCGTCCTCCCTCCTGCCCGACTGA
CACTTCTTTTGCACTCGGGCATCTCGTTGCAGATTTTCCCCAGGGCAGCG
GCAGCCGGGCACTCCGAAACAATCTGGTCGGTAACCGAAGCCCGTGGCAA
CGCTGATGAGTCAGGTTCCCCTTGCCACCGAATGGTGGCCACTCGAAGAA
AATCTGGTTGCGCGCGGCGGTGGTTCGCCGCTTCACTTGTTCGAACCCGA
GGAGCGTAGGGAAGTTGAACCCGGGGCCTATATATTTCCCGAATGGGTGC
CGTCCTTTGATTCCCTGTTCGTAGAGGGCAGCGGTACGCCGATTTACACG
TTCGAGTCACAGTTCGGGCCGGACCAAGAACCTGGGCTATTTTCTGAAGG
CGCCAACCGGGTCGGGGCCGCATCCCCCTCGTCATCAGCAGCAGCCGACG
TCGCTTTCCTGAGGGGTTTGGACCTAAAAGGGCTCATCGCCAAAGGGGCG
AGTGAGGCACATGTCCGGAGGCTGATGGTATCTCCGGCGACCGCAACACC
GGGGGGGTCCGACGAAGGCGGGCACCCGCCATACGACGAGAGCTATCAGC
CAACCCCGGCCACCTTGATCGCAGACCTCAAGGCGGCAGCTAACTTCGAA
AGCGACATAGCCGACCTCAACAATGACGGCAGCCGAGGCCCGCTTCCTTA
CGTCAAGACCGGTGCAGACACCATGGACGAGGTGCACGAGGACGAAAACG
AACAGTACATTTTTTCCACCCCCGAAGAGCTGGCGGAGGAAGAGCTCGAA
GAGGAACACGTACCAGGACTTGATTGCAGGGAGTTCCACGCTCGAAGCAT
CGCGGTGCATGCCGCCCTGAAACAGTACGTGCTGAACCAGCGCGTGTTCT
TCGTGTTGATTCACACTGGACGATGGGTAGACGTGGAACTTCCTGAATAT
CCGATGAGCACAGATGTGCTCTTGATGGCTTTGGGAGTGTCGCGCGCCAC
CGGAAACCTAGTCGGTGTCATATCGCAATCCAATGTTGTCACAACCTGTG
TGACTAGATGGAGTGTACTCTGACATAATAAGAGCTCCACAAACGAAATC
CGGTTTTCTCCGGTGTCTCCCATTCCTCTCACGATGCGCACTCCATGGCT
GGAACGGAGGTGACGTTTTTTTGTGCGTGCTCTTGTTGTGGGTGTGCTGT
TTCCGTGGAGGACAAACATCGCTGATTGTCCTTTCCTGGGGAGAGACGTG
CGTGGACTATTCTCATCAACAAAGTGTGAGTCTCCTTAGCTTCCGCCCGC
TGGTATCATACTCTTGCCTATCTAGGGTGTGACCATGGTAGGCGGCTGCA
TCAGGTGGGGCTTGTCGTGCTTTCGGTCGCGCAAACCGAAGGCGGGGACA
GCTGACAGCGATGACGGTGATGACGAAACGGGTCTGGCGCAACATCAGGC
CGGGGTGGTCGTCGACGTTAGGGATGACGTGGGCGTGGACCTGGCTTTTT
TTATACCGGAACTATTTGGGCTGCTTGATAGAGTGTTTCGCGTGGTCGTG
GACTTTCTGTGAAGACCACTAGTCTAAGCAGACAGGTTTCTCTGTTCGGA
GTAACGGTTTTCCATAATGCCAGAGTCGTACAGTAGCGTAAGAAGTATCT
GCCGTGCACCGCGGCCACTCGCGAGAGTACTGACAGCGATGTTTCCGGGT
AGTTTGTTGGTGAGTCGTTTTTTGAGTGTAATCGGGAAGCAGGATGACAC
GGTCTGTCCCGGGGTATCGTTGCCAGCTTGTACCAACAATACAAGTTTTT
GATGGCGTCGCGCAGAGCTTGAGGGAAGGGTTGTCGTGTGCCTCGCCACG
ATGTCCGGTCAGAAGCGGTGGTGGCCACGGTGTTTTTCATACCTTGTATT
TTTCATATCCCCAAGAAACCAAAGACCGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig941:17107..20036+

>mRNA_E_fasciculatus_S2_contig941.17456.1 ID=mRNA_E_fasciculatus_S2_contig941.17456.1|Name=mRNA_E_fasciculatus_S2_contig941.17456.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=918bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig941:17107..20036+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTCAGGTTCCCCTTGCCACCGAATGGTGGCCACTCGAAGAAAATCT
GGTTGCGCGCGGCGGTGGTTCGCCGCTTCACTTGTTCGAACCCGAGGAGC
GTAGGGAAGTTGAACCCGGGGCCTATATATTTCCCGAATGGGTGCCGTCC
TTTGATTCCCTGTTCGTAGAGGGCAGCGGTACGCCGATTTACACGTTCGA
GTCACAGTTCGGGCCGGACCAAGAACCTGGGCTATTTTCTGAAGGCGCCA
ACCGGGTCGGGGCCGCATCCCCCTCGTCATCAGCAGCAGCCGACGTCGCT
TTCCTGAGGGGTTTGGACCTAAAAGGGCTCATCGCCAAAGGGGCGAGTGA
GGCACATGTCCGGAGGCTGATGGTATCTCCGGCGACCGCAACACCGGGGG
GGTCCGACGAAGGCGGGCACCCGCCATACGACGAGAGCTATCAGCCAACC
CCGGCCACCTTGATCGCAGACCTCAAGGCGGCAGCTAACTTCGAAAGCGA
CATAGCCGACCTCAACAATGACGGCAGCCGAGGCCCGCTTCCTTACGTCA
AGACCGGTGCAGACACCATGGACGAGGTGCACGAGGACGAAAACGAACAG
TACATTTTTTCCACCCCCGAAGAGCTGGCGGAGGAAGAGCTCGAAGAGGA
ACACGTACCAGGACTTGATTGCAGGGAGTTCCACGCTCGAAGCATCGCGG
TGCATGCCGCCCTGAAACAGTACGTGCTGAACCAGCGCGTGTTCTTCGTG
TTGATTCACACTGGACGATGGGTAGACGTGGAACTTCCTGAATATCCGAT
GAGCACAGATGTGCTCTTGATGGCTTTGGGAGTGTCGCGCGCCACCGGAA
ACCTAGTCGGTGTCATATCGCAATCCAATGTTGTCACAACCTGTGTGACT
AGATGGAGTGTACTCTGA
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