mRNA_E_fasciculatus_S2_contig9406.17451.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9406.17451.1
Unique NamemRNA_E_fasciculatus_S2_contig9406.17451.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: GST (N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU12_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 9.440e-21
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLD TYAL
Sbjct:  280 PKRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDKTYAL 322
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: GST (N-terminal domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IZB2_PUNGR)

HSP 1 Score: 64.3 bits (155), Expect = 2.570e-12
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQ LYE AG  Q PYL+DPNTG + +ES+EI +YL ATYAL
Sbjct:   54 PKRQMLYEKAGCFQVPYLVDPNTGVQMFESAEIVEYLQATYAL 96
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: Putative (thioredoxin family protein-like n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0I1A4_COCNU)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-11
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQKLYE  G  Q PYL DPNTG K +ES+EI DYL ATYAL
Sbjct:  111 PKRQKLYEEVGHFQVPYLDDPNTGVKMFESAEIIDYLRATYAL 153
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: uncharacterized (protein LOC105033756 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QCY0_ELAGV)

HSP 1 Score: 65.5 bits (158), Expect = 2.510e-11
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQKLYE AG  Q PYL DPNTG K +ES+EI DYL ATYAL
Sbjct:  299 PKRQKLYEEAGHFQVPYLDDPNTGVKMFESAEIIDYLRATYAL 341
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: uncharacterized (protein LOC116196089 n=2 Tax=Punica granatum TaxID=22663 RepID=A0A218X2A3_PUNGR)

HSP 1 Score: 64.3 bits (155), Expect = 6.450e-11
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQ LYE AG  Q PYL+DPNTG + +ES+EI +YL ATYAL
Sbjct:  295 PKRQMLYEKAGCFQVPYLVDPNTGVQMFESAEIVEYLQATYAL 337
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: GST (N-terminal domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NXP1_9MAGN)

HSP 1 Score: 62.0 bits (149), Expect = 7.880e-11
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQ LY+ AG+ Q PYL DPNTG K +ES+EI DYL ATY L
Sbjct:  114 PKRQVLYQKAGSFQVPYLEDPNTGVKMFESAEIVDYLKATYVL 156
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: Glutathione (S-transferase n=1 Tax=Nitriliruptoraceae bacterium ZYF776 TaxID=2604685 RepID=A0A7K1IME5_9ACTN)

HSP 1 Score: 58.9 bits (141), Expect = 3.110e-10
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQ+LY   G  Q PYL DPNTG K +ES+EI +YL ATYAL
Sbjct:   50 PKRQELYARVGHFQAPYLEDPNTGVKMFESAEIVEYLRATYAL 92
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PGQ0_9ASTR)

HSP 1 Score: 62.4 bits (150), Expect = 3.170e-10
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQ+LYE  G  Q PYL DPNTG K +ES+EI DYL ATYAL
Sbjct:  295 PKRQELYEKIGHFQVPYLEDPNTGVKMFESAEIVDYLRATYAL 337
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: Thioredoxin (family protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PXN9_ARTAN)

HSP 1 Score: 62.0 bits (149), Expect = 4.310e-10
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQ LYE  G  Q PYL DPNTG K +ES+EI DYL ATYAL
Sbjct:  290 PKRQVLYEKVGRFQAPYLEDPNTGVKMFESAEIVDYLRATYAL 332
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BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Match: uncharacterized (protein LOC104114425 n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051AF6E3)

HSP 1 Score: 59.7 bits (143), Expect = 6.510e-10
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 PQRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL 129
            P+RQ LYE  G  Q PYL DPNTG + +ES++I DYL ATYAL
Sbjct:  118 PKRQVLYERVGHFQVPYLEDPNTGVQMFESADIVDYLQATYAL 160
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9406.17451.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
GST9.440e-2195.35N-terminal domain-containing protein n=2 Tax=Ectoc... [more]
GST2.570e-1265.12N-terminal domain-containing protein n=1 Tax=Punic... [more]
Putative1.310e-1169.77thioredoxin family protein-like n=1 Tax=Cocos nuci... [more]
uncharacterized2.510e-1172.09protein LOC105033756 isoform X1 n=3 Tax=Arecaceae ... [more]
uncharacterized6.450e-1165.12protein LOC116196089 n=2 Tax=Punica granatum TaxID... [more]
GST7.880e-1165.12N-terminal domain-containing protein n=1 Tax=Kingd... [more]
Glutathione3.110e-1062.79S-transferase n=1 Tax=Nitriliruptoraceae bacterium... [more]
Uncharacterized3.170e-1067.44protein n=1 Tax=Mikania micrantha TaxID=192012 Rep... [more]
Thioredoxin4.310e-1067.44family protein n=1 Tax=Artemisia annua TaxID=35608... [more]
uncharacterized6.510e-1062.79protein LOC104114425 n=1 Tax=Nicotiana tomentosifo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9406contigE_fasciculatus_S2_contig9406:55..186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score75.5
Seed ortholog evalue5.7e-12
Seed eggNOG ortholog2880.D7FU12
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Glutathione S-transferase, N-terminal domain
EggNOG OGs28NCX@1,2QUYC@2759
Cds size108
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842590.0580115-UTR-E_fasciculatus_S2_contig9406:54..781696842590.0580115-UTR-E_fasciculatus_S2_contig9406:54..78Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9406 55..78 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842590.0715218-CDS-E_fasciculatus_S2_contig9406:78..1861696842590.0715218-CDS-E_fasciculatus_S2_contig9406:78..186Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9406 79..186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9406.17451.1prot_E_fasciculatus_S2_contig9406.17451.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9406 79..186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9406.17451.1

>prot_E_fasciculatus_S2_contig9406.17451.1 ID=prot_E_fasciculatus_S2_contig9406.17451.1|Name=mRNA_E_fasciculatus_S2_contig9406.17451.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=36bp
MAGAGQTPYLIDPNTGAKGYESSEINDYLDATYAL*
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mRNA from alignment at E_fasciculatus_S2_contig9406:55..186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9406.17451.1 ID=mRNA_E_fasciculatus_S2_contig9406.17451.1|Name=mRNA_E_fasciculatus_S2_contig9406.17451.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=132bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9406:55..186+ (Ectocarpus fasciculatus EfasUO2)
CCGCAGCGCCAAAAGTTGTACGAGATGGCGGGTGCGGGACAGACGCCATA
CTTGATAGACCCCAACACCGGCGCCAAGGGATACGAATCCTCCGAGATCA
ACGACTACCTGGACGCGACCTACGCGCTCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9406:55..186+

>mRNA_E_fasciculatus_S2_contig9406.17451.1 ID=mRNA_E_fasciculatus_S2_contig9406.17451.1|Name=mRNA_E_fasciculatus_S2_contig9406.17451.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=108bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9406:55..186+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGGTGCGGGACAGACGCCATACTTGATAGACCCCAACACCGGCGC
CAAGGGATACGAATCCTCCGAGATCAACGACTACCTGGACGCGACCTACG
CGCTCTAG
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