mRNA_E_fasciculatus_S2_contig9400.17448.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9400.17448.1
Unique NamemRNA_E_fasciculatus_S2_contig9400.17448.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: YihA6, (YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH7_ECTSI)

HSP 1 Score: 468 bits (1203), Expect = 1.490e-162
Identity = 236/241 (97.93%), Postives = 236/241 (97.93%), Query Frame = 1 
Query:   76 PKAPRGRAGDPQDDQVSLGKVGRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQP 798
            PKAPRGR GDPQDDQ   GK GRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQP
Sbjct:  222 PKAPRGRVGDPQDDQDGPGKAGRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQP 462
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BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC1_9STRA)

HSP 1 Score: 233 bits (595), Expect = 5.550e-74
Identity = 118/200 (59.00%), Postives = 152/200 (76.00%), Query Frame = 1 
Query:  202 VEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKV----SKTPGRTRKINIFKAKNG--NDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQA 783
            VEF+GSY + E  WP   +PE+AFLGRSNVGKSSMLN LFGE  AKV    SKTPGRT+ INIF A+ G    +++C FADLPGYGYAK++K+  R IE FL  YLERR+ LKLLILL D+RR+ L SDA +L++A D     +++L+VATKVDKL+ ME+ +N+ R+++ F LP  LP+ FSA+TGQG+KE+W YIR+A
Sbjct:    1 VEFIGSYAEDENAWPSEAVPEVAFLGRSNVGKSSMLNCLFGERAAKVRFVVSKTPGRTQLINIFSARGGAGGARELCRFADLPGYGYAKLAKEDMRAIEGFLMQYLERRAQLKLLILLVDARRDALDSDAEILDFAADMGVG-FRVLVVATKVDKLSAMEAALNLARIRDGFGLPEELPLPFSAVTGQGRKEVWQYIREA 199
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: EngB-type (G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYN5_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.770e-46
Identity = 96/208 (46.15%), Postives = 128/208 (61.54%), Query Frame = 1 
Query:  178 FGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQ 795
            F  +DI+ V F GS+ D     P   LPE+A  GRSNVGKSS+LN L G  + VA VSKTPGRT++IN+FK  + N   V    DLPGYGYAK+ K  Q  I   +  YL  R  L+L +LL D+RREP  SD  +++Y          +L++ATKVDKL   +   N+ RL + F+LP G+PV+FS++TG  K+ IW+ IR A   +
Sbjct:   64 FSIDDIQDVTFEGSHLDDV---PFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNG-PVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAAN---VPLLVLATKVDKLKHEDMEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAIWNAIRDACVGE 264
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BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: Ribosome (biogenesis gtp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6M2_9STRA)

HSP 1 Score: 167 bits (422), Expect = 9.630e-46
Identity = 104/241 (43.15%), Postives = 142/241 (58.92%), Query Frame = 1 
Query:   82 APRGRAGDPQDDQVSLGKVGRNPFKKEKIVSK-FGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQ 795
            AP  + GD  D   S+ K     F++  +  + F  +DI+ V F GS+ D     P   LPE+A  GRSNVGKSS+LN L G  + VA VSKTPGRT++IN+FK  + N   V    DLPGYGYAK+ K  Q  I   +  YL  R  L+L +LL D+RREP  SD  +++Y          +L++ATKVDKL   +   N+ RL + F+LP G+PV+FS++TG  K+ +WS IR A   +
Sbjct:  139 APWSKGGD--DSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDV---PFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNG-PVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAAN---IPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGE 370
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BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LL08_9EUKA)

HSP 1 Score: 157 bits (397), Expect = 5.070e-44
Identity = 86/195 (44.10%), Postives = 118/195 (60.51%), Query Frame = 1 
Query:  202 VEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQ 780
            VEF+GS+ +   + P   LPEI   GRSNVGKSS LN L G  +  AKVSKTPGRTR IN+FK         C   DLPGYG+AK+S++ Q    + +  Y   R  L+L +L  D++REP  SD  +LE+    E      ++VATK DKL+      ++++L E F+LP G P+ FS+ TG G +E+W Y++Q
Sbjct:   22 VEFLGSFTEPRGM-PNLRLPEITLAGRSNVGKSSALNALSGRRKKAAKVSKTPGRTRLINLFKVGK-----ACAITDLPGYGFAKVSREMQDDWRRSIEAYFRNREQLRLAVLFVDAQREPQESDGQLLEFLLYNE---LPTVVVATKADKLSQTRLKASLRQLSEEFDLPEGQPIPFSSQTGAGVRELWQYLQQ 207
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BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: Ribosome (biogenesis gtp-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3H5_9EUKA)

HSP 1 Score: 153 bits (387), Expect = 7.430e-43
Identity = 83/182 (45.60%), Postives = 112/182 (61.54%), Query Frame = 1 
Query:  244 PRTNLPEIAFLGRSNVGKSSMLNTLFGEP---VAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQ 780
            P   LPE    GRSNVGKSS LNTL G P   +AKVSKTPG TR IN+++  N     VC   DLPGYGYAK+SK+ Q    K +  Y+ RR  LKL +L  D++R+P  SDA +L++ E +       L+VATK DKL       +++ L+E+  LP   P++ S++TG GK+E+W  I +
Sbjct:    2 PSLRLPEFTLAGRSNVGKSSALNTLAGRPNKKIAKVSKTPGSTRLINLYRLGN-----VCTITDLPGYGYAKVSKEMQDDWRKQIEAYMRRREELKLAVLFVDAQRDPQESDAQLLDFLEAEAK---STLVVATKADKLAKQALQSSLEYLRESLALPSDQPIALSSVTGLGKREVWGAINE 175
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BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: Hypothetical (protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5N2_9SPIT)

HSP 1 Score: 152 bits (385), Expect = 7.890e-42
Identity = 85/195 (43.59%), Postives = 119/195 (61.03%), Query Frame = 1 
Query:  202 VEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQ 780
            V FV S+ D  ++ PR+ LPEI  +GRSNVGKSS LN L G  + VA+VSKTPGRTR IN+F          C   DLPGYG+AK+S + Q    K +  YL  R NL+  ++  DS+REP   DA +L++    E      L+VATKVDKL + +    +  L++  +L P  P+ FS++T  G+KE+W+Y+ +
Sbjct:   51 VTFVNSFTDPAQM-PRSTLPEITLVGRSNVGKSSALNCLSGRRKKVAQVSKTPGRTRLINLFSVGK-----ACMITDLPGYGFAKVSVEMQEEWRKNVEKYLRLRDNLRAAVVFIDSQREPQQVDAQILDFLMYNE---IPALVVATKVDKLKSSQLQPCMAALRKGLQLSPDQPIPFSSVTDTGRKEVWNYLEE 236
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BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JUJ9_9ALVE)

HSP 1 Score: 153 bits (387), Expect = 1.350e-41
Identity = 86/204 (42.16%), Postives = 120/204 (58.82%), Query Frame = 1 
Query:  169 VSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPV----AKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAK-MSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIW 765
            V  F   D+  V F+G Y+D  ++ P T LPE+AFLGRSNVGKSSMLN+L          ++SKTPGRT++IN+F+  +   + +    DLPGYGY + +SK+  + I  FL  YL +R+ L+L +LL DSR      DA VL      +      L+ ATKVD+L   E   N+ RL+E  +LP   PV FS++TG+    +W
Sbjct:   87 VRPFEREDVGAVSFIGGYEDSRDL-PATGLPEVAFLGRSNVGKSSMLNSLQSRASERAEVRISKTPGRTQQINLFRLSDRRKRGLVVLVDLPGYGYTRSISKEDTKKIRSFLLAYLRKRAELRLFLLLVDSRLPAQEVDADVLANLRSMD---VPYLVAATKVDRLKASERDANLARLREELQLPSWQPVPFSSMTGENGPLLW 286
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: EngB-type (G domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EB47_VITBC)

HSP 1 Score: 157 bits (397), Expect = 2.230e-41
Identity = 89/214 (41.59%), Postives = 123/214 (57.48%), Query Frame = 1 
Query:  169 VSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPV----AKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAK-MSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQ 795
            V  F   D+  V F+G Y+D  ++ P T LPE+AFLGRSNVGKSSMLN+L          ++SKTPGRT++IN+F+  +   + +    DLPGYGY + +SK+  + I  FL  YL +R+ L+L +LL DSR      DA VL      +      L+ ATKVD+L   E   N+ RL+E  +LP   PV FS++TG+    +W  I  A   Q
Sbjct:  110 VRPFEREDVGAVSFIGGYEDSRDL-PATGLPEVAFLGRSNVGKSSMLNSLQSRASERAEVRISKTPGRTQQINLFRLSDRRKRGLVVLVDLPGYGYTRSISKEDTKKIRSFLLAYLRKRAELRLFLLLVDSRLPAQEVDADVLANLRSMD---VPYLVAATKVDRLKASERDANLARLREELQLPSWQPVPFSSMTGENGPLLWRAISDACIGQ 319
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Match: EngB-type (G domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JZQ4_GUITC)

HSP 1 Score: 148 bits (373), Expect = 3.050e-40
Identity = 83/194 (42.78%), Postives = 116/194 (59.79%), Query Frame = 1 
Query:  202 VEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQA 783
             +F+GS+D +  + P   +PE+AF GRSNVGKSSMLN L G  +A  SKTPGRTR+IN+F  K+   + +    DLPG GYAKMSK  +  +   +  Y++ R  LKLL++L D R EP   D  + E   DK+      ++V TK DKL+  E  +   + +EA  +  G  +SFS+ TG+GK  +W  I QA
Sbjct:    5 TKFLGSFDGEPPLLP---VPEVAFAGRSNVGKSSMLNCLTGSKLAVTSKTPGRTRRINLFVHKDNTGRALG-IVDLPGLGYAKMSKGIKEKLSDEITQYIKTREALKLLVILIDPRLEPQEQDVLLAELCLDKK---LPFVMVGTKADKLSNNEIEIAFSKYEEAIGIGTGQLISFSSKTGEGKAFVWKQINQA 191
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9400.17448.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
YihA6,1.490e-16297.93YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculos... [more]
P-loop5.550e-7459.00containing nucleoside triphosphate hydrolase prote... [more]
EngB-type2.770e-4646.15G domain-containing protein n=1 Tax=Nannochloropsi... [more]
Ribosome9.630e-4643.15biogenesis gtp-binding protein n=1 Tax=Nannochloro... [more]
Hypothetical5.070e-4444.10protein n=1 Tax=Coccolithus braarudii TaxID=221442... [more]
Ribosome7.430e-4345.60biogenesis gtp-binding protein n=1 Tax=Chrysochrom... [more]
Hypothetical7.890e-4243.59protein n=1 Tax=Strombidinopsis acuminata TaxID=14... [more]
Hypothetical1.350e-4142.16protein (Fragment) n=1 Tax=Vitrella brassicaformis... [more]
EngB-type2.230e-4141.59G domain-containing protein n=2 Tax=Vitrella brass... [more]
EngB-type3.050e-4042.78G domain-containing protein n=1 Tax=Guillardia the... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9400contigE_fasciculatus_S2_contig9400:419..5658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score468.4
Seed ortholog evalue2.2e-129
Seed eggNOG ortholog2880.D8LDH7
Model size801
KEGG koko:K03978
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Exons6
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
Cds size786
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9400.17448.1prot_E_fasciculatus_S2_contig9400.17448.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9400 419..5643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842589.8358974-CDS-E_fasciculatus_S2_contig9400:418..5801696842589.8358974-CDS-E_fasciculatus_S2_contig9400:418..580Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9400 419..580 -
1696842589.8492484-CDS-E_fasciculatus_S2_contig9400:1638..17971696842589.8492484-CDS-E_fasciculatus_S2_contig9400:1638..1797Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9400 1639..1797 -
1696842589.8601184-CDS-E_fasciculatus_S2_contig9400:2482..25781696842589.8601184-CDS-E_fasciculatus_S2_contig9400:2482..2578Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9400 2483..2578 -
1696842589.8710272-CDS-E_fasciculatus_S2_contig9400:3198..33331696842589.8710272-CDS-E_fasciculatus_S2_contig9400:3198..3333Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9400 3199..3333 -
1696842589.8819468-CDS-E_fasciculatus_S2_contig9400:4455..46591696842589.8819468-CDS-E_fasciculatus_S2_contig9400:4455..4659Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9400 4456..4659 -
1696842589.9008193-CDS-E_fasciculatus_S2_contig9400:5613..56431696842589.9008193-CDS-E_fasciculatus_S2_contig9400:5613..5643Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9400 5614..5643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842589.9099936-UTR-E_fasciculatus_S2_contig9400:5643..56581696842589.9099936-UTR-E_fasciculatus_S2_contig9400:5643..5658Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9400 5644..5658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9400.17448.1

>prot_E_fasciculatus_S2_contig9400.17448.1 ID=prot_E_fasciculatus_S2_contig9400.17448.1|Name=mRNA_E_fasciculatus_S2_contig9400.17448.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=262bp
MEAKKEKKTKERARKRAERKPKAPRGRAGDPQDDQVSLGKVGRNPFKKEK
IVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNT
LFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDK
QRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLY
KILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIW
SYIRQAAAAQP*
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mRNA from alignment at E_fasciculatus_S2_contig9400:419..5658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9400.17448.1 ID=mRNA_E_fasciculatus_S2_contig9400.17448.1|Name=mRNA_E_fasciculatus_S2_contig9400.17448.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5240bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9400:419..5658- (Ectocarpus fasciculatus EfasUO2)
AAAGAGTTAGCAAAAATGGAAGCAAAGAAGGAGAAAAAGACGAAGGTCAG
CATGACTGGGTAATCTTGTTCGATGTCGATGCTGCCTGCGGTTCCAGTGG
ATGTTGGAAATAGAGTGACTGCCGTTCATCCGAGCTTCTGGCTGATCGAT
CTTTACGGGATGTTTGTTTCAGTATTGGCGTTGGTTTTTTCTTCTTGATT
TCGGTGGTGTGCGTTTCGACTGCTGTATATTGCCCTCGTTGTCTTGTGTT
TTTCAAGACGGTTGCGTCGGTGCTCTCAGACGCATCCCTCGTTCATGGAT
ATTGCAAACAACCATCCCCCTTTCGCTATCCCTTCTCGACAGGGTGCGGA
TATTTCTTCGCTTGTTGGACGCCATGTGCGGGGTCCCGGATCATGCCCTT
CGGCGTAACCCCGTCTAGCCCTTGGCCCTCCTTACCCCTAGAGGCCTCAT
CCAGGCTCTTCACTTCCATCACAGTCGCGCTGAACGATATCATGCCACTC
CGTCGATTTCTGCTCCGAGAGGAAGACCCGTTACTTTCCACACATTTTTC
AGGGTTTCAGGACCGATTTGTTGTTGGTGTTGTGGTTGCTTTCGTAGTAA
CAGGCGTTCAGGTCACAGCACACTACAGCAGAATGGTTCAAATACAAAAA
GCGGTCCAACTGACATGCCCTCCTATCAGCAAACAGACTCGGAAGAGCGG
GGCTACTTAAGGCCTCTCTCCCTACCCCACTCTTGACATGCCTGGCTGCC
ACCCAACCGCCATCGCATTCGCCCCCCCCCCCCCCCTGACCGCCAAACTC
CGTACACAAGACCTAGACATACAACGCCTGCTTAGAATCGATCCCCCCTG
TAGAGTTGGAACACNNNNNNNNNNCCCCTTAACATCCCTGGCTGCCCCCC
AACCCCCACCCCATTCCCCCCCCCCCCCCCCTGACCGTCAATGGTCTGAC
GACGATTGTACCGCATGCACGGGTATGATCACCCCCCCCCGGTCGATAGG
AGCGCGCCCGAAAGCGCGCGGAGAGAAAACCCAAGGCGCCGAGGGGGAGG
GCGGGGGACCCGCAGGACGACCAAGTTAGCCTGGGGAAGGTGGGCAGGAA
CCCTTTCAAGAAGGAGAAGATCGTGTCCAAGTTCGGCGCCAACGACATCC
GGAAGGTCGAGTTCGTCGGGAGCTACGACGACAAAGAGGAGATATGGCCC
AGGGTAAGTGAGGGTTCCAGGGAGACAGCAGGGGGGCGGGGTACTATTAT
GCTTTGCATGCCTTAGCGGTTGGACCATTTATCATGCGTCCTCGAGAGGG
CGGAGGATTGTCCCCACAGGACCGATCACCGATGACCAGTCGCTCCTTCC
TACCTTGCCAACGGTGGCCCAACAATTTTTCACGGCTGTGGTTGGATTCG
GTTTGTTGCTTTCGGTATTCGAATTGTTTCTCGTTGTACATAGCGTTTTT
GCGTTTTTGTGTGTGCTGCCCGTGTTTGCCCATCTTTTCCATCATATGTC
TCCACTGTTGTGTACTCTGCATGTACTCATGTCGTTTTTATATAGGAATA
AATATCTGTAGCGTCGTGGCTGTTCGCGCGTGCAGTGAAGAAGTTGTTGT
CTTTTCCCCCTGCATTATGCCGTGTGCCTTGTGTTTTTTGGTGCCATGCG
GCAGGGATGAGCGGCAGCAAATTATTTTACATCTCCGCGGTTTCCGCCAA
TTTTGTATGCTACCTTGCATTCCTTGATACCCCGGATCTTGATTGACACC
GCAAACACACGGATGATGACAGTACCAGCTTCTGGTCGATCCTTGTGAAT
CGTAGCCTGGGCCGGCGAAAACCAGGCATATCGCTCCGTCCCGGCATTCT
AGGGATGCGAGATCTATTGTCTGATCGTCGAGGCAATAAAAACCGCGAGA
GGGAAGGTACAGGGAGATGTTTGACGCATGGAATACTGTAGCGAGGACAA
GACGGTGGCTGTACTGGGGCATAACAAGTGGGTAGAAAGGGCAGGAAGTG
ATATCGGTAGGAGCGATAGACTAGGGAAGACATTTTGAGCCATCGTTGGC
AATGTAGGAAGGGACGATTGGCCATCGGTGATCGGTCCTGTAGGAACAAT
GCTCCGTCCTCTCGAGGACGCGTGGTCAATGATCTAACCGCTAAGGCATG
CAAAACATAAGAGTACGCCCCCCCACCCGGAACACGTCAGCACCAACAGC
TTTACGAACTCCTGGCCATACCCACGGAACCGCCTCTTTGTATCCCCTCC
CCGTAACCGATACGTTTTTGTTTGTGTTTTGTGTGTGTTTGACATCTCTC
GGGCGGGGGGATTTAATTTTCGCAGACGAATCTTCCGGAGATAGCGTTCC
TGGGGCGATCAAACGTGGGCAAGAGCAGCATGCTCAACACCCTCTTCGGG
GAGCCGGTGGCCAAGGTGTCCAAGACTCCCGGGCGCACTCGCAAGATCAA
CATTTTCAAGGTGGGTTGCCAAGAAAATCTCTCAAGCATTGCCGTCGGAG
CGGGATGGCGCCGACGATCCCCATAGGCACACGCACGAGGTCATGCGTTG
CAGCGATTTCGACGTAAAATCGACTTGACCCCAGCGTCTGGTTTCGAGCT
GATTGTGAAACCAGTGTGTTGTCGAACGTAAGGTAGATGTCTGTTCTCTC
CAAAAGAAGCTTTGATTCCGATCTGGATGATGATGCCCCACGATGGCGGT
CGTGAGGAGCACGCTTGACCCAAAAGAGAAGCTGTAGGCGGCGTGGGCGG
TAGAGGTTGGAGGTGGGGGCTCTCGGGTGTAGAGGTGGCGGCCCTCGGCG
CAATTTTCCTCTGCAATCTTCATGTACGGCAAGGAAACTTCTCATCACGG
AAAGTAGGTGTCATTGCTCTTTTCGGGAGCGTAAGTCACAAGTAACATAC
CGGAACTTGGTGGGAGCAAGCTATTTCAGATGCACTTTAGGTTGAAGAAG
CTATCCTCGCCCCTCTGCAAAGCGGGTAAGGGTAGCATGTCGGGGTTTTA
TCCATCGACCAGTCCACGACATTTTCTCTTGTGTTTTTGTCAGCTCATGT
GACGTTTTGGTCTTCCTTTAATCCGACCAGGCGAAGAACGGCAACGACAA
GGACGTGTGTTACTTCGCCGATTTACCGGGATACGGATACGCTAAAATGT
CGAAGGACAAGCAGCGCACCATCGAGGTCCGTGACTACGGAGGCATATCG
CCCTCCCCCCCCCCCCCCCCCCCCCACCGAACAAACAACCACAAAAACGA
GCACAACGGCAAGCGAGGGAGGAAGAGAACGGAAGAACAANNNNNNNNNN
TCTGTCCCTCACCCCCCCCCCCCTATCCACCGCAGCGTAGCGCAAATGGG
CTGTTGGTGCCATGTTGGGGGTTGAGTTTCCCCCCCCCCCCCCCCCGCGC
CTCTCTATGCGCCTGTCGTTGTGGCCGTTCTTTGTGTCCCCTCTGACTCA
TTGTTTGGGGACATGTCGGTGATCGTGCTCGTGGAGGCGTCGATCCTGTA
GAAAAGCAAGCATTGTCATCACGTCGATGTGGCGTAACCTCTCAGCACGG
GTGTTTGTGTGTGAAGTGTGCCCCCAATGGCTGTGAACGGAAGCAACGAT
CTACAACCTTCCCGATACACACAACAACCAACCAACCCCCCGCCTCCTAC
GGTTCGGGTTAGGGATTCGTTGTTCGGATGGTCGCCCGTTGTTCAGAGAC
AGGGCGGACAACCCGTAGCGCATGTCAATCGGCGTGCCTTGTCTCCAGAG
GGAGCTAAACAAGCGAGGCTTGCAGACTCGCAAGCACATTTCAAGTTTCT
GCGTGTGACAATGTGTGTGTACCTGAACCCTTCTATCGAACCCCGTTCAA
ACATCGGCCAGAAATTTCTGGGAATGTACCTTGAGCGGCGGTCGAACCTA
AAGCTTTTGATTCTACTGGCGGATTCTCGGAGAGAACCTCTGGCATCCGA
TGCGGGAGTGCTGGAGTACGCGGAGGACAAAGAAGACCGTCTTTATAAAA
TTCTCCTGGTGGCCACCAAGGTATGTTCGCGCCGGTAACGATTCAACGGG
GCCCCCGAGGTTGAGCGATACCGCAGGGATATCTGTCTCTTTTCCGTGTT
CGTTGCTGTATACTAAAATGAGTTCACACCGAAGGAGGGTCGAGAGGTGG
CGGAGTGATTTTACACGCCGGTTCCTTGGTAGGCTCGTGCGATTTAGATA
CACACCAACTTTTCTCCGCTCTATTTTCAGTACAATAACCCAAATCGACA
GCAAGAATTCAAGGCAATCGCCTGCCGAGCACAAGCCTATCCCTTGGAAA
CGTTAATGTTTTCAGCGTGGACGTTTTGCTCGCTGATGTTACTACGTGGC
TGCGGCAATGAACACAGTTGGCCTTGGCCTCCAGCCAATAATCGCGGGTG
ACGACCGGCCGAGCTCTTGTATCCGGCCTGGTTGCCACGACGATTACGTG
GCAGTCAGTTTTCCCGTAGGTCAAACACCTATCTATCGGCTGCGTTTTTT
GCAGTTACATGGTGCCTTCAAACCCAGCATGTTTTTCGTAAAAAATGTCA
AGTGCAAGATTTCCCTCATCTCGCGTCCGGCTATAACCGGGCGCCGCTTG
TGGCAAGTTAGCGAAAGTTTTTGTGTTTCCTTCCATCCCTCCTCTTCTCT
TTTTCAACAGGGTATTGCCCCGCGTTTCCCTCCTGCGGCGCTTGCCTTAT
TTTTTATGGCTCGAATTTTCGGCAGTCCCTGTTCCTGGTCGACCATGGAG
TCAGTCGCATACTCCGGAATTTCCCGTGTTCCCCCCCGCAGATTGCAAAC
TTTTCAATGAAAAAACTTTTTTTTTCCGAACGCCTCCAAATTGCAGTTTT
TGTTCTTTGGGCAAAAGCAGGTGCTGTAGCAATACAAACATACGCACGCA
ACGATTCCTCTACCACTGGCTTGTTGTCTATCCGCCCGTTGACTCCGGAG
GTGTTTATCATTTTGTAGGTGTTCTGGTATCTTTTTAGCATCACACGTAT
CGTGGTGCTTGCTGATCTTGTTGTTTCATCCGGTCTTAGACTTTTGGTGG
TTTTTTGCTTTGTTGTTGCCGCTGGCAGGTGGACAAGCTCAACACGATGG
AGTCCGTGGTAAACATTAAACGCCTCCAGGAGGCGTTCGAACTCCCCCCA
GGCCTTCCCGTGTCCTTCTCGGCGATAACAGGACAGGGCAAGAAGGAGAT
CTGGTCGTACATCCGACAGGCGGCAGCAGCGCAACCTTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9400:419..5658-

>mRNA_E_fasciculatus_S2_contig9400.17448.1 ID=mRNA_E_fasciculatus_S2_contig9400.17448.1|Name=mRNA_E_fasciculatus_S2_contig9400.17448.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=786bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9400:419..5658- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGCAAAGAAGGAGAAAAAGACGAAGGAGCGCGCCCGAAAGCGCGC
GGAGAGAAAACCCAAGGCGCCGAGGGGGAGGGCGGGGGACCCGCAGGACG
ACCAAGTTAGCCTGGGGAAGGTGGGCAGGAACCCTTTCAAGAAGGAGAAG
ATCGTGTCCAAGTTCGGCGCCAACGACATCCGGAAGGTCGAGTTCGTCGG
GAGCTACGACGACAAAGAGGAGATATGGCCCAGGACGAATCTTCCGGAGA
TAGCGTTCCTGGGGCGATCAAACGTGGGCAAGAGCAGCATGCTCAACACC
CTCTTCGGGGAGCCGGTGGCCAAGGTGTCCAAGACTCCCGGGCGCACTCG
CAAGATCAACATTTTCAAGGCGAAGAACGGCAACGACAAGGACGTGTGTT
ACTTCGCCGATTTACCGGGATACGGATACGCTAAAATGTCGAAGGACAAG
CAGCGCACCATCGAGAAATTTCTGGGAATGTACCTTGAGCGGCGGTCGAA
CCTAAAGCTTTTGATTCTACTGGCGGATTCTCGGAGAGAACCTCTGGCAT
CCGATGCGGGAGTGCTGGAGTACGCGGAGGACAAAGAAGACCGTCTTTAT
AAAATTCTCCTGGTGGCCACCAAGGTGGACAAGCTCAACACGATGGAGTC
CGTGGTAAACATTAAACGCCTCCAGGAGGCGTTCGAACTCCCCCCAGGCC
TTCCCGTGTCCTTCTCGGCGATAACAGGACAGGGCAAGAAGGAGATCTGG
TCGTACATCCGACAGGCGGCAGCAGCGCAACCTTAG
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