mRNA_E_fasciculatus_S2_contig939.17437.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig939.17437.1
Unique NamemRNA_E_fasciculatus_S2_contig939.17437.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig939.17437.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN77_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 5.570e-74
Identity = 239/268 (89.18%), Postives = 248/268 (92.54%), Query Frame = 1 
Query:    1 TMFAGRGSSRTLFAVRVASTITSKPRGSSRIYARNRAAVERRPKVEVAGKTARRDEKEGAAGDLKSSLKTTLHRAGKKGDWRAALQTLDEMKLSPGLVDAMSYNIAITACGGRQLGKALGLLDEMEEEGVTPNIFIFNSAIKACGDADECEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGKEGSGRTLWSYLGQLKKK 804
            T+  GR S R+LFAVRV S+ITSK R SSRIYA N+AAVERRPKV+VA KTARRDE+EG AGDLKSSLKTTLH+AGKK DWR ALQTLDE+KLSPGLVDAMSYNIAITACGGRQL KAL LL EMEEEGVTPNIFIFNSAIKACGDADE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGK+GSGR LW YLGQLKKK
Sbjct:   27 TITTGRASLRSLFAVRVISSITSKSRESSRIYAWNKAAVERRPKVKVATKTARRDEEEGVAGDLKSSLKTTLHKAGKKRDWRVALQTLDEIKLSPGLVDAMSYNIAITACGGRQLEKALDLLGEMEEEGVTPNIFIFNSAIKACGDADEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGKQGSGRRLWGYLGQLKKK 294
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig939.17437.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.570e-7489.18protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN77... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig939contigE_fasciculatus_S2_contig939:1304..2914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score250.4
Seed ortholog evalue9.8e-64
Seed eggNOG ortholog2880.D8LN77
Model size1611
Hectar predicted targeting categorymitochondrion
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-05_003820.1
Cds size816
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842587.9789226-UTR-E_fasciculatus_S2_contig939:1303..13061696842587.9789226-UTR-E_fasciculatus_S2_contig939:1303..1306Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig939 1304..1306 +
1696842588.0112689-UTR-E_fasciculatus_S2_contig939:2122..29141696842588.0112689-UTR-E_fasciculatus_S2_contig939:2122..2914Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig939 2123..2914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842588.0000691-CDS-E_fasciculatus_S2_contig939:1306..21221696842588.0000691-CDS-E_fasciculatus_S2_contig939:1306..2122Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig939 1307..2122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig939.17437.1prot_E_fasciculatus_S2_contig939.17437.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig939 1307..2122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig939.17437.1

>prot_E_fasciculatus_S2_contig939.17437.1 ID=prot_E_fasciculatus_S2_contig939.17437.1|Name=mRNA_E_fasciculatus_S2_contig939.17437.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=272bp
MFAGRGSSRTLFAVRVASTITSKPRGSSRIYARNRAAVERRPKVEVAGKT
ARRDEKEGAAGDLKSSLKTTLHRAGKKGDWRAALQTLDEMKLSPGLVDAM
SYNIAITACGGRQLGKALGLLDEMEEEGVTPNIFIFNSAIKACGDADECE
KALTLLDEVLGRGLSPNVITYNAAIGACAQCGRWQKALDLLGEMSERQVV
ADVTTYNAVIEAFAGGDQWEKALDLLSDMSERGVVPNARTRTLAISACGK
EGSGRTLWSYLGQLKKKQIHR*
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mRNA from alignment at E_fasciculatus_S2_contig939:1304..2914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig939.17437.1 ID=mRNA_E_fasciculatus_S2_contig939.17437.1|Name=mRNA_E_fasciculatus_S2_contig939.17437.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1611bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig939:1304..2914+ (Ectocarpus fasciculatus EfasUO2)
ACCATGTTCGCAGGTCGCGGTTCTTCACGAACGTTGTTTGCTGTGCGTGT
GGCCTCCACCATCACTTCAAAACCGCGCGGCTCTTCTCGGATATACGCCC
GGAATCGAGCTGCGGTAGAGAGGCGACCGAAGGTAGAAGTGGCCGGCAAG
ACAGCTCGGAGAGATGAGAAAGAAGGGGCTGCGGGCGATTTGAAGTCCAG
TCTGAAAACTACGTTGCACAGAGCTGGGAAGAAGGGGGATTGGAGAGCAG
CACTGCAAACGCTCGATGAAATGAAACTGTCTCCAGGACTTGTCGACGCG
ATGTCGTACAACATAGCCATCACGGCTTGTGGAGGACGACAGCTGGGGAA
GGCTTTGGGTCTTTTGGATGAGATGGAAGAGGAGGGGGTGACTCCCAACA
TATTTATTTTCAATTCGGCTATAAAGGCGTGCGGCGATGCCGACGAATGC
GAAAAGGCTCTTACTCTTCTGGATGAGGTTTTGGGACGGGGATTGTCCCC
TAACGTGATCACCTACAACGCAGCTATCGGTGCGTGTGCACAATGTGGTC
GGTGGCAGAAGGCCCTGGACCTTCTAGGCGAAATGTCAGAGAGGCAAGTG
GTCGCTGATGTCACAACCTACAACGCCGTCATCGAAGCGTTTGCGGGGGG
GGATCAATGGGAGAAGGCTCTGGACCTCCTGAGCGACATGTCGGAGCGGG
GAGTGGTCCCCAATGCTAGAACCCGCACTTTAGCCATATCTGCTTGTGGC
AAAGAGGGGAGTGGAAGAACGCTTTGGAGTTATTTGGGTCAACTGAAGAA
AAAGCAAATTCATCGTTGAAAGGTGCATGTGTGATGGACAGCGTCAGCTC
TAGATGTTGTTTGTAGCACGCGGTAGCCGCCTGCCTCATCTTGATTCCTC
GCCGATTATCCGCGTTCGACAGCTGGGAAAACTCGGTTTGTGAGATCGCC
CCCGTGTGACAACCACAACGGAGCACGCGAAGTGTGTCCGTCGACCGATG
CAGTCGTCCACTCCGAGCAAGGGTGATCATTACTGCAGTTGGACGATGCC
AAAAGGAGGGTGACACACAGCTGCACAACTCTCACGTTCATCCCGGGCCT
GTGCGCACGCGTAAGAGCAGGCCCATTACTGCCAGCCTGTCCTCGCGGTC
AGTTATGGCTGGATCGACTCAGAGAATGATACCGCGAACGAAGGTTGGCA
TCTAGAGGGAGCGATAGCGACAGAAATGCAAATGCCAAACTGTGACGCAG
GATCTGTATCGGCTCCATTGTGTGTGTCTGTTTGGTCTTTGGATTTTGAG
CACGGGATGAGAGATACATCGAGCTGTCGTTCTTGGCTCCCAGACTCCGA
GAGAAAACTCAGCTGAGGGTAGACAGAGCAAGCGACGATTTCCCCCTCAT
CATGCTCTGTTGGGTTTGGCACCAAACTCCAGAAACAGCTGTAGCCTCGC
ACCCGCGCTACGCGGCTACGCCCACATAAGTCTGCGTCGCAATCGCACAG
TGAAAACCAAATCCGGAACATCACCAGCCATCGGTGCAGGCTGGTTTTGC
CAACTCGTGGCGGTGCGTGGGTATGTAGGCGTGACATGATCTTGCGCCAG
AAATGAGCCAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig939:1304..2914+

>mRNA_E_fasciculatus_S2_contig939.17437.1 ID=mRNA_E_fasciculatus_S2_contig939.17437.1|Name=mRNA_E_fasciculatus_S2_contig939.17437.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=816bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig939:1304..2914+ (Ectocarpus fasciculatus EfasUO2)
ATGTTCGCAGGTCGCGGTTCTTCACGAACGTTGTTTGCTGTGCGTGTGGC
CTCCACCATCACTTCAAAACCGCGCGGCTCTTCTCGGATATACGCCCGGA
ATCGAGCTGCGGTAGAGAGGCGACCGAAGGTAGAAGTGGCCGGCAAGACA
GCTCGGAGAGATGAGAAAGAAGGGGCTGCGGGCGATTTGAAGTCCAGTCT
GAAAACTACGTTGCACAGAGCTGGGAAGAAGGGGGATTGGAGAGCAGCAC
TGCAAACGCTCGATGAAATGAAACTGTCTCCAGGACTTGTCGACGCGATG
TCGTACAACATAGCCATCACGGCTTGTGGAGGACGACAGCTGGGGAAGGC
TTTGGGTCTTTTGGATGAGATGGAAGAGGAGGGGGTGACTCCCAACATAT
TTATTTTCAATTCGGCTATAAAGGCGTGCGGCGATGCCGACGAATGCGAA
AAGGCTCTTACTCTTCTGGATGAGGTTTTGGGACGGGGATTGTCCCCTAA
CGTGATCACCTACAACGCAGCTATCGGTGCGTGTGCACAATGTGGTCGGT
GGCAGAAGGCCCTGGACCTTCTAGGCGAAATGTCAGAGAGGCAAGTGGTC
GCTGATGTCACAACCTACAACGCCGTCATCGAAGCGTTTGCGGGGGGGGA
TCAATGGGAGAAGGCTCTGGACCTCCTGAGCGACATGTCGGAGCGGGGAG
TGGTCCCCAATGCTAGAACCCGCACTTTAGCCATATCTGCTTGTGGCAAA
GAGGGGAGTGGAAGAACGCTTTGGAGTTATTTGGGTCAACTGAAGAAAAA
GCAAATTCATCGTTGA
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