mRNA_E_fasciculatus_S2_contig9386.17435.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9386.17435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI) HSP 1 Score: 626 bits (1614), Expect = 3.670e-222 Identity = 308/340 (90.59%), Postives = 323/340 (95.00%), Query Frame = 2
Query: 2 GYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWDLDNLCRYHRILGLGAFRSLIEAGRLDVERFLIMTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNDQWKSNIRREPLNLIQPLPFYEELARRLIDQQEGWENQAFLAVQWRTETSTGNLTVCYGHVREAVERYREQEGFGRDQVFFNTDLTPHASGTYSSQQLAVKRKVLAMIDEDYPSATNNTVTAHLDKLEDTGVRSLTSGVVAALPRVLLASTKRRWWWSRRGVCQKVDSHFVDLVVEFREAFGVGTEGETAAAVGLFPARFSMDDRCSEQIHSPPH 1021
GYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWDLD+LC+YHRILGLGAFRSLIEAGRLDVE+FL+MTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMN QWKSNIRR PL LI+PLPFYE LARRLIDQQ+GWEN+AFLAVQWRTETSTGNLT CYGHVREAVERYREQEGF R QVFFNTDL PH+SGTYSSQQLAVK +VLAMIDEDYPSA NNTVTA+LD LEDTGV+SLTSGVVAALPRVLLAST+R+WWWSRRGVCQK+ SHFVDLVVEFREAF VGTEGETAAAVGLFPARFSMDD CSEQ+ PH
Sbjct: 146 GYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWDLDSLCQYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNGQWKSNIRRYPLKLIRPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLMPHSSGTYSSQQLAVKLQVLAMIDEDYPSAMNNTVTAYLDNLEDTGVQSLTSGVVAALPRVLLASTERKWWWSRRGVCQKIHSHFVDLVVEFREAFDVGTEGETAAAVGLFPARFSMDDWCSEQLR--PH 483
BLAST of mRNA_E_fasciculatus_S2_contig9386.17435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE) HSP 1 Score: 620 bits (1598), Expect = 9.600e-220 Identity = 302/330 (91.52%), Postives = 319/330 (96.67%), Query Frame = 2
Query: 2 GYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWDLDNLCRYHRILGLGAFRSLIEAGRLDVERFLIMTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNDQWKSNIRREPLNLIQPLPFYEELARRLIDQQEGWENQAFLAVQWRTETSTGNLTVCYGHVREAVERYREQEGFGRDQVFFNTDLTPHASGTYSSQQLAVKRKVLAMIDEDYPSATNNTVTAHLDKLEDTGVRSLTSGVVAALPRVLLASTKRRWWWSRRGVCQKVDSHFVDLVVEFREAFGVGTEGETAAAVGLFPARFSMDDR 991
GY+IFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYW LD+LCRYHRILGLGAFRSLIEAGRLDVE+FL+MTPVRPSADPMSTL+TAKDVREAFGGYEDSQVIVMNDQWKSNIRREPL LI+PLPFYE LARRLIDQQ+GWEN+AFLAVQWRTETSTGNLT CYGHVREAVERYREQEGF R QVFFNTDLTPH+SGTYSSQQLAVK++VLAMIDEDYPSA N+TVTA+LD LEDTGV+SLTSGVVAAL RVLLASTKR+WWWS+RGVCQK+ SHFVDLVVEFREAF VGTEGETAAAVGLFPARFSMDDR
Sbjct: 144 GYLIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWGLDSLCRYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLKTAKDVREAFGGYEDSQVIVMNDQWKSNIRREPLKLIKPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLTPHSSGTYSSQQLAVKQQVLAMIDEDYPSAMNSTVTAYLDNLEDTGVQSLTSGVVAALARVLLASTKRKWWWSQRGVCQKIHSHFVDLVVEFREAFNVGTEGETAAAVGLFPARFSMDDR 473
BLAST of mRNA_E_fasciculatus_S2_contig9386.17435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI) HSP 1 Score: 243 bits (619), Expect = 2.070e-72 Identity = 135/332 (40.66%), Postives = 197/332 (59.34%), Query Frame = 2
Query: 2 GYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRA-DSDLGFGAYWDLDNLCRYHRILGLGAFRSLIEAGRLDVERFLIMTPVRPSADPMSTLRTAKDVREAFGGYEDS---QVIVMNDQWKSNIRREPLNLIQPLPFYEELARRLIDQQEGWENQAFLAVQWRTETSTGNLTVCYGHVREAVERYREQEGFGRDQVFFNTDLTPHASGTYSSQQLAVKRKVLAMIDEDYPSATNNTVTAHLDKLEDTGVRSLTSGVVAALPRVLLAST---KRRWWWSRRGVCQKVDSHFVDLVVEFREAFGVGTEGETAAAVGLFPARF 976
GY+++VNGREQLG N++L++DG+++AK L RT VE+PV +AR+++ D+ +G GAYWDL LC YHRIL L +FR+++ GR+ E F T +R + LR A D ++DS QVI M WKS RE L ++P PF+ + R L++ Q+ WE F+AVQWRTE + G+LT CY V+ VE R G+G QV FNTDL SGTY + A VL +I++DYP A +N + +++D+GVR+ SG+ A +V++ S+ R C+K S ++ L+ E+RE + E ET V +FP +
Sbjct: 114 GYVVYVNGREQLGGNKFLVTDGIFMAKALGRTFVEYPVKDARVAKLEDASIGLGAYWDLSELCMYHRILDLTSFRNMMADGRIPPEAF---TTIRSDTHEV-LLRHATDEEHIVDMFKDSDKYQVIAMESTWKSGKEREALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELANGDLTECYKEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINDDYPQALHNELHHFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDIPDAYRCEKPYSGYITLITEWREEI-LHKEPETV--VRMFPFEY 438
BLAST of mRNA_E_fasciculatus_S2_contig9386.17435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE) HSP 1 Score: 245 bits (626), Expect = 3.980e-72 Identity = 134/331 (40.48%), Postives = 195/331 (58.91%), Query Frame = 2
Query: 2 GYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRAD-SDLGFGAYWDLDNLCRYHRILGLGAFRSLIEAGRLDVERFLIMTPVRPSADPMSTLRTAKDVR--EAFGGYEDSQVIVMNDQWKSNIRREPLNLIQPLPFYEELARRLIDQQEGWENQAFLAVQWRTETSTGNLTVCYGHVREAVERYREQEGFGRDQVFFNTDLTPHASGTYSSQQLAVKRKVLAMIDEDYPSATNNTVTAHLDKLEDTGVRSLTSGVVAALPRVLLAST---KRRWWWSRRGVCQKVDSHFVDLVVEFREAFGVGTEGETAAAVGLFPARF 976
GY+++VNGREQLG N++L+SDG+++AK L RT VE+PV +AR+++ + + +G GAYWDL LC YHRIL L +FR+++ GR+ E F T +R + + + + F YE QVIVM WKS R+ L ++P PF+ + R L++ Q+ WE F+AVQWRTE S GNLT CY V+ VE R G+G QV FNTDL SGTY + A VL +I+ DYP A +N + +++D+GVR+ SG+ A +V++ S+ R C+K S ++ L+ E+RE + E ET V +FP +
Sbjct: 239 GYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDARVAKLEEASIGLGAYWDLSELCMYHRILDLNSFRNMMVDGRIPPEAF---TTIRSDSHEVLLYHATDEEHMVDMFKDYEKYQVIVMESTWKSGNERDALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELSNGNLTECYQEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINHDYPHALHNELHQFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDILDAYRCEKPYSGYITLITEWREEI-LHKEPETV--VRMFPFEY 563
BLAST of mRNA_E_fasciculatus_S2_contig9386.17435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V9_ECTSI) HSP 1 Score: 214 bits (544), Expect = 7.440e-63 Identity = 119/265 (44.91%), Postives = 162/265 (61.13%), Query Frame = 2
Query: 119 NARISRADSDLGFGAYWDLDNLCRYHRILGLGAFRSLIEAGRLDVERFLIMTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNDQWKSNIRREPLNLIQPLPFYEELARRLIDQQEGWENQAFLAVQWRTETSTGNLTVCYG-HVREAVERYREQEGFGRDQVFFNTDLTPHASGTYSSQQLAVKRKVLAMIDEDYPSATNNTVTAHLDKLEDTGVRSLTSGVVAALPRVLLASTKRRWWWSRRGVCQKVDSHFVDLVVEFR 910
++RIS AD+DLG Y+D + LC YHRIL L AFR+L+ L E FL + + +L TA ++ F Y+ QVIVM WKS +RREP++L++P P Y + +LI+ QEGW++ FL+VQWRTETSTGNLT CYG HVR AVE R GF R QVFFNTDL S TY++ ++ V+ I DYP A +NTV L+ D GV+++ SG+++A LL S+ + CQK S ++DLV ++R
Sbjct: 3 HSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLSAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQVIVMKMAWKSALRREPVDLLRPNPLYLDSVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANNGVVDAIRGDYPCAMDNTVYDILNDERDAGVKAIISGLISASADFLLTSSFNG---TGSNECQKPHSKYIDLVTDWR 264
BLAST of mRNA_E_fasciculatus_S2_contig9386.17435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD38_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.050e-48 Identity = 113/292 (38.70%), Postives = 163/292 (55.82%), Query Frame = 2
Query: 188 RYHRILGLGAFRSLIEAGRLDVERFLIMTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNDQWKSNI-RREPLNLIQPLPFYEELARRLIDQQEGWENQAFLAVQWRTETSTGNLTVCYG-HVREAVERYREQEGFGRDQVFFNTDLTPHASGTYSSQQLAVKRKVLAMIDEDYPSATNNTVTAHLDKLEDTGVRSLTSGVVAALPRVLLASTKRRWWWSRRGVCQKVDSHFVDLVVEFREAFGVGTEGETAAAVGLFPARFSMDDRCSEQIHSPPHVDVLLRRGLAAI 1057
RYHRIL L AFR+L+ L E FL + + +L TA ++ F Y DQW++ RREP++L++P PFY L +LI+ QEGW++ FL+VQWRTETSTGNLT CYG HVR AVE R GF R QVFFNTDL S TY++ ++ V+ I DYP A +NTV L+ +D GV+++ SG+++A LL S+ + CQK S ++DLV ++R + G+ +++G S+++ + P ++L GL A+
Sbjct: 109 RYHRILDLWAFRALLRDRLLSAEGFLTVLSAEWEQTLLPSLVTAGNITSFFEEY---------DQWQARAWRREPVDLLRPNPFYLGLVGKLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGVHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSAYSGVVDAIRGDYPVAMDNTVYDILNDEQDAGVKAIVSGLISASADFLLTSSFNG---TGSNECQKPHSKYIDLVTDWR----LDVVGKDLSSIGQMLPLLSLEEGGED---GTPLALLVLLAGLVAL 381 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9386.17435.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9386.17435.1 >prot_E_fasciculatus_S2_contig9386.17435.1 ID=prot_E_fasciculatus_S2_contig9386.17435.1|Name=mRNA_E_fasciculatus_S2_contig9386.17435.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=264bp MTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNDQWKSNIRREPLNLback to top mRNA from alignment at E_fasciculatus_S2_contig9386:172..5982+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9386.17435.1 ID=mRNA_E_fasciculatus_S2_contig9386.17435.1|Name=mRNA_E_fasciculatus_S2_contig9386.17435.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5811bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9386:172..5982+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9386:172..5982+ >mRNA_E_fasciculatus_S2_contig9386.17435.1 ID=mRNA_E_fasciculatus_S2_contig9386.17435.1|Name=mRNA_E_fasciculatus_S2_contig9386.17435.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=792bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9386:172..5982+ (Ectocarpus fasciculatus EfasUO2)back to top |