mRNA_E_fasciculatus_S2_contig938.17429.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig938.17429.1
Unique NamemRNA_E_fasciculatus_S2_contig938.17429.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig938.17429.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P1_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 9.330e-44
Identity = 80/90 (88.89%), Postives = 81/90 (90.00%), Query Frame = 2 
Query:    2 CLTRRIRFTMNQQALRPTASPSTTISVLTPPAAAAPPVDGPVGSLGGLVSRRHLRVTHTPPQTPPMPPMDLRYNYAAGVFIVVLFTWAAL 271
            CLTRRIRF MNQ ALRPT +PST IS LTP AAA P V GPVGSLGGLVSRRHLRVTHTPPQTPPMPPMDLRYNYAAGVFIVVLFTWAAL
Sbjct:    7 CLTRRIRFAMNQ-ALRPTVTPSTKISALTPTAAARPIV-GPVGSLGGLVSRRHLRVTHTPPQTPPMPPMDLRYNYAAGVFIVVLFTWAAL 94
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig938.17429.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.330e-4488.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig938contigE_fasciculatus_S2_contig938:5548..7512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size273
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_001960.1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842587.1044002-CDS-E_fasciculatus_S2_contig938:5547..56041696842587.1044002-CDS-E_fasciculatus_S2_contig938:5547..5604Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 5548..5604 -
1696842587.1161451-CDS-E_fasciculatus_S2_contig938:6464..66431696842587.1161451-CDS-E_fasciculatus_S2_contig938:6464..6643Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 6465..6643 -
1696842587.1270866-CDS-E_fasciculatus_S2_contig938:7475..75121696842587.1270866-CDS-E_fasciculatus_S2_contig938:7475..7512Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 7476..7512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig938.17429.1prot_E_fasciculatus_S2_contig938.17429.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig938 5548..7512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig938.17429.1

>prot_E_fasciculatus_S2_contig938.17429.1 ID=prot_E_fasciculatus_S2_contig938.17429.1|Name=mRNA_E_fasciculatus_S2_contig938.17429.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=91bp
MPDKANQIHNEPAGASTNGITFNHNISINTTSSSSTSCRWTGRELGRSRE
QTPPPRDAHPASDASDAADGPQVQLRRRRVHRGPLHVGGA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig938:5548..7512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig938.17429.1 ID=mRNA_E_fasciculatus_S2_contig938.17429.1|Name=mRNA_E_fasciculatus_S2_contig938.17429.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1965bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig938:5548..7512- (Ectocarpus fasciculatus EfasUO2)
ATGCCTGACAAGGCGAATCAGATTCACAATGAACCAGGTGCGCATCGTAG
CTGTGAGAGAAGCGTTGCAGCAAGTCGTAGAGAGTCGTACAATCATGGGG
TCTTTTAGGGCGACCGAGCGGGGAGTCAGCGCTGACTGATTGGTGCAGCA
TTGGGAATTGCTCGCCGACTGCTGTTCCGATGTGCTTCAATTATGTGGGA
CTCCTCTATGTCACCAATGTATCTCGATGTATTTTCCCCGCTGTCTGCCG
TGCTGAGCTGATGATCTGCAAGCAACACTTTACATACTTGCATAATCAAC
TGACTCAAGTGTGCACGACCTCGCATCCATGAGGCACGGCGGTCAGCGTT
CGTTGCCAGAGAGCGGTGCACGAACTGATCTTTCGGCACTATTTACAGTT
ACATGAAGCGAACTTGTACTCTTCAGCGTCTCTGTGGTTGCCACACAGCA
GTATGCATACAGTACAGGAGTAGTGGCATTCGCGAAACCTCGCGCTTGGT
TGTACATGTAGCTACATATACAACAGCAGCAGTAGATACGAAATACAACA
ACATCAGTAACGGTGGGTGCTCTTCACCTCCGACTGTTCCAACTACAACA
GCAGTACAACAGTAGATACGAAATACAATAACAGCAGTAACGGTGGGTGC
TCTTCACCTCCGACTGTTCTAACTGCGTATTACACACGGCCCAGCGGGTT
GTAACGCACGGCCTATTTGGACGGCCCATCGGGTTGTAACTCACGGCCTA
TTGGGTGGTAATGGCTTCGTGTTTGTGTCACGGCTACAGGCTGCCTTCTT
CACCATACGACGAACGACCCCCCCCGCGCCCGCGCGCCAATTTCCCACCA
CCTCGCCGCCGCTCTACAGCAGGCGCTTCGACCAACGGCATCACCTTCAA
CCACAATATCAGTATTAACACCACCAGCAGCAGCAGCACCTCCTGTAGAT
GGACCGGTCGGGAGCTTGGGCGGTCTCGTGAGCAGACGCCACCTCCGCGT
GACGCACACCCCGCCTCAGACGCCTCCGATGCCGCCGATGGACCTCAGGT
ACGTCACATAGACCATATGTGGGGACGCGGCGAAATCTTCAACCCAACAG
AAATTTGAAAGACTGTTTTGTATCGCCACTCTGCTGCCCCTAGTTCCGCC
AAAAGGCATGGTCGTTTGGTTGTCGTATCAGCTTAAGCCAAGACCCGAAA
TGGAGAGTGTGGTCATCACCTACCTATCTCTCTTTGACCTCTTCCCCCCC
ATGGCCACCGATGGACCTGTTGCCATTGACGCAACCCGTTTGGAGAGGTT
CGCTAGCATCCTCAATAGCCGGACAACAGTGCTGTACCCCTCTCACGAAA
TCGCTGGCCAGGCGGAAGGCTGGGTGCACTGTACCACGAATGCGGTAGTT
GTTGTCATCCGCTTCTTCACGGTACCATTGTTTTAAATATTGCAGGACTC
GCAGCCTTAGCCGAACACCACTCCGGACTTCTTCCACGAGTGCTACAATA
TGTTGTGTCACAGACTGCTTCTACCTTTTGACACCTGATGTGAATCACTC
GCATTGGACCGGCAGCCTGAGAAACTTTCTTTTTGTGCGGGCGTTGTCGT
TGTTATGTCTTCAAATTAATATACCGTTCGGGTCTCTGCTCAATACTCTT
CAACAACACGTGCCTGTCCAACTGACTCAGACGTATGTTTCTTTCCTATG
TTTACTCTGAGGTATACTCTAGCACCGTCAGTCAAGCGCACTGCGGTGCA
GAAAACAATCAAGCAGGTCCGGATGAATCAAGTCAGTGAAACAGATGAAC
CGCCAGAAGTCTCTGGACCGAGCCAAGCCCACGATGAATCATCACACGGA
AGCCTGCATATCGATTTTTTAAAACCACAACGTTTTCCTCGCCACCCATG
GCACCAAGGTACAACTACGCCGCCGGCGTGTTCATCGTGGTCCTCTTCAC
GTGGGCGGCGCTTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig938:5548..7512-

>mRNA_E_fasciculatus_S2_contig938.17429.1 ID=mRNA_E_fasciculatus_S2_contig938.17429.1|Name=mRNA_E_fasciculatus_S2_contig938.17429.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=273bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig938:5548..7512- (Ectocarpus fasciculatus EfasUO2)
ATGCCTGACAAGGCGAATCAGATTCACAATGAACCAGCAGGCGCTTCGAC
CAACGGCATCACCTTCAACCACAATATCAGTATTAACACCACCAGCAGCA
GCAGCACCTCCTGTAGATGGACCGGTCGGGAGCTTGGGCGGTCTCGTGAG
CAGACGCCACCTCCGCGTGACGCACACCCCGCCTCAGACGCCTCCGATGC
CGCCGATGGACCTCAGGTACAACTACGCCGCCGGCGTGTTCATCGTGGTC
CTCTTCACGTGGGCGGCGCTTAG
back to top