mRNA_E_fasciculatus_S2_contig9374.17424.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9374.17424.1
Unique NamemRNA_E_fasciculatus_S2_contig9374.17424.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9374.17424.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9374contigE_fasciculatus_S2_contig9374:1315..1805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size491
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842586.7682858-UTR-E_fasciculatus_S2_contig9374:1314..14671696842586.7682858-UTR-E_fasciculatus_S2_contig9374:1314..1467Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9374 1315..1467 -
1696842586.7949905-UTR-E_fasciculatus_S2_contig9374:1773..18051696842586.7949905-UTR-E_fasciculatus_S2_contig9374:1773..1805Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9374 1774..1805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842586.7825646-CDS-E_fasciculatus_S2_contig9374:1467..17731696842586.7825646-CDS-E_fasciculatus_S2_contig9374:1467..1773Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9374 1468..1773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9374.17424.1prot_E_fasciculatus_S2_contig9374.17424.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9374 1468..1773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9374.17424.1

>prot_E_fasciculatus_S2_contig9374.17424.1 ID=prot_E_fasciculatus_S2_contig9374.17424.1|Name=mRNA_E_fasciculatus_S2_contig9374.17424.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=102bp
MRDAWGGLITDRIGICAAKKKILSSENGWFDARATSLSRRCLLSSYSSIL
SVALELYRRSHGRPPFLKGDHRPLPGHPCVSATTHGIICFGKKAVGMFDF
R*
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mRNA from alignment at E_fasciculatus_S2_contig9374:1315..1805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9374.17424.1 ID=mRNA_E_fasciculatus_S2_contig9374.17424.1|Name=mRNA_E_fasciculatus_S2_contig9374.17424.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=491bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9374:1315..1805- (Ectocarpus fasciculatus EfasUO2)
GAGGTGGTTGGACGGAGGCGGGTTTCGAATGGATGCGGGATGCATGGGGT
GGGTTGATCACCGACCGAATTGGTATATGTGCGGCAAAGAAGAAGATTCT
TTCCAGCGAAAATGGGTGGTTTGACGCTAGGGCGACCTCGTTGTCACGGC
GTTGTCTTTTGTCGTCGTATTCTTCTATATTGTCTGTCGCCTTGGAATTG
TATCGTAGATCACACGGCCGGCCGCCGTTCTTAAAAGGAGACCACCGCCC
ACTACCAGGCCATCCGTGCGTTTCTGCGACTACACATGGGATCATTTGTT
TCGGGAAGAAAGCGGTTGGCATGTTTGACTTTCGCTAGTTTTCCTTCGTT
ACTGGTATGTTCATTGGCTGCCACCATTTATCTTCTACTCCATGTATGGC
GAGTGATCGTTGCTATCTTGCTGTTCCCTCTTTCGTCTTGTCGGTCTGGT
TTGTTTGTTGTCTTGACGAAACATCAAGCCTCTGCTCCTAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9374:1315..1805-

>mRNA_E_fasciculatus_S2_contig9374.17424.1 ID=mRNA_E_fasciculatus_S2_contig9374.17424.1|Name=mRNA_E_fasciculatus_S2_contig9374.17424.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9374:1315..1805- (Ectocarpus fasciculatus EfasUO2)
ATGCGGGATGCATGGGGTGGGTTGATCACCGACCGAATTGGTATATGTGC
GGCAAAGAAGAAGATTCTTTCCAGCGAAAATGGGTGGTTTGACGCTAGGG
CGACCTCGTTGTCACGGCGTTGTCTTTTGTCGTCGTATTCTTCTATATTG
TCTGTCGCCTTGGAATTGTATCGTAGATCACACGGCCGGCCGCCGTTCTT
AAAAGGAGACCACCGCCCACTACCAGGCCATCCGTGCGTTTCTGCGACTA
CACATGGGATCATTTGTTTCGGGAAGAAAGCGGTTGGCATGTTTGACTTT
CGCTAG
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