mRNA_E_fasciculatus_S2_contig934.17395.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Tocopherol (phytyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE1_ECTSI) HSP 1 Score: 272 bits (695), Expect = 2.970e-82 Identity = 140/158 (88.61%), Postives = 148/158 (93.67%), Query Frame = 3
Query: 3 QLAGYGLSEEKTALWALSLPFRDAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTAASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
QLAGYGLS EKTALWAL+LPFRDAKCALALAYFTVFAVVIALMKDVPDV+GDR FNIPSFSVVLGE KLFAFARRLLTALLWSTA LGVGAKAAASASLPLT+ RG++SA+ALI GQLVRRRA GVDP+QP QVYDFYMDLWK+FYLSYLFLPLAR
Sbjct: 221 QLAGYGLSREKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVEGDRMFNIPSFSVVLGETKLFAFARRLLTALLWSTAGVLGVGAKAAASASLPLTSGLRGLMSAVALIAGQLVRRRAAGVDPKQPKQVYDFYMDLWKLFYLSYLFLPLAR 378
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM7_9PHAE) HSP 1 Score: 273 bits (698), Expect = 2.410e-81 Identity = 145/158 (91.77%), Postives = 149/158 (94.30%), Query Frame = 3
Query: 3 QLAGYGLSEEKTALWALSLPFRDAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTAASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
QLAGYGLS EKTALW L+LPFRDAKCALALAYFTVFAVVIALMKDVPDV GDR FNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLT+ G+VSALALITGQL+RRRA GVDPEQP QVYDFYMDLWKIFYLSYLFLPLAR
Sbjct: 332 QLAGYGLSGEKTALWTLTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRMFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTS---GLVSALALITGQLMRRRAAGVDPEQPKQVYDFYMDLWKIFYLSYLFLPLAR 486
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G488_PHATC) HSP 1 Score: 129 bits (323), Expect = 9.410e-29 Identity = 70/136 (51.47%), Postives = 89/136 (65.44%), Query Frame = 3
Query: 69 DAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTAASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
D +C L+ +F VF +VIALMKDVPDV GDR N+ +FSV LG+ ++F +RRLL+ L W+ G A A +A L AASR + + A + G VR+ A GVDPE QVY +YM LWK+FYLSYL LP AR
Sbjct: 272 DPRCYLSSIFFAVFGIVIALMKDVPDVAGDRNSNVRTFSVRLGQGRIFQASRRLLSGLFWTVGVGFGKAAFQAPTAGL---AASRSLTAVAAFLGGCSVRKDAQGVDPENAGQVYSYYMHLWKLFYLSYLVLPFAR 404
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLS0_9STRA) HSP 1 Score: 126 bits (317), Expect = 8.810e-28 Identity = 79/159 (49.69%), Postives = 93/159 (58.49%), Query Frame = 3
Query: 9 AGYGLSEEKTALWALSLPFRDAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTAA---SRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
A YG S + L L+ D +C L+ YF VF +VIALMKDVPDV+GD NI + SV LG ++ RLLT L W A GA AA P +AA R +V A AL+ G VRR A VDP P +VY FYM LWK+FYLSYLFLP AR
Sbjct: 280 AAYGGSGRGSVLGCLA---GDLRCGLSSLYFAVFGLVIALMKDVPDVEGDALSNIRTASVRLGPSAVYQAMHRLLTGLFWGVGLAFFRGALAA-----PASAAVRSGRALVGAAALLAGASVRREASPVDPHNPREVYGFYMHLWKLFYLSYLFLPFAR 430
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Tocopherol (phytyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGZ5_9STRA) HSP 1 Score: 122 bits (307), Expect = 7.190e-27 Identity = 69/143 (48.25%), Postives = 91/143 (63.64%), Query Frame = 3
Query: 57 LPFRDAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGA-KAAASASLPLT--AASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
LP RDA+C L + +F VF VVIAL+KDVPD KGD + NI SF+V +G ++FA A L+ ALLW T AA+ A +AA++A PL+ +R + +A G+ V + V+P P QVY FYM LW +FY SYL LP R
Sbjct: 227 LPLRDARCGLLVGFFAVFGVVIALLKDVPDFKGDAQHNIRSFTVRMGRERVFAAASNLMIALLWGTGAAMAAAAVRAASAAGTPLSWVVGARAALXXVAGAAGRTVLLKRRAVNPTDPKQVYKFYMFLWGLFYTSYLCLPFVR 369
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0ULR7_9STRA) HSP 1 Score: 119 bits (297), Expect = 2.640e-26 Identity = 65/137 (47.45%), Postives = 83/137 (60.58%), Query Frame = 3
Query: 66 RDAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTAASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
+ +C L+ YF VF +VIALMKDVPD+KGD NI + SV LG ++ RLLT L W A GA A++ + R +V AL+ G V++ A VDPE P +VYD+YM LWK+FYLSY LPLAR
Sbjct: 143 NNPRCLLSSLYFAVFGLVIALMKDVPDIKGDELSNIRTVSVRLGAKTVYKMMHRLLTGLFWGAGVAFFRGAIVNNKATMTVRL-GRAVVGISALLAGASVQKEAAPVDPENPKEVYDYYMHLWKLFYLSYFVLPLAR 278
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBA4_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.040e-25 Identity = 72/145 (49.66%), Postives = 89/145 (61.38%), Query Frame = 3
Query: 51 LSLPFRDAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGA---KAAASASLPLTAASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
L L D KC L+ ++ +F +VIALMKDVPDV+GD K NI SFSV +G+ K+F ARR L+ LL+ G GA A SAS ASR IV ++ G R + V+PE S+VYD+YM LWKIFYLSY LP AR
Sbjct: 107 LKLFLSDRKCLLSSLFYGIFGIVIALMKDVPDVEGDEKANIRSFSVRVGQKKIFKGARRTLSLLLF------GYGAGFLNAGRSASTFSVLASRMIVGLSSIYFGVKARENSRDVNPESSSEVYDYYMYLWKIFYLSYFSLPFAR 245
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UVV6_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.910e-25 Identity = 71/159 (44.65%), Postives = 94/159 (59.12%), Query Frame = 3
Query: 3 QLAGYGLSEEKTALWALSLPFRDAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVG-AKAAASASLPLTAASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
Q A +G T + L D +CAL+ +F+VF VIALMKDVPDVKGD++ NI + V G+ ++F RRLLT S +G+G K AA+A + R I+ +++ G VR+ AV VDPE QVY +YM LWK+FY SYL LP AR
Sbjct: 282 QAAAFGGGAGTTVIGCL---LSDTRCALSSLFFSVFGFVIALMKDVPDVKGDKESNIKTMPVRYGQHRIFGSVRRLLTVSFLS----IGIGFLKGAANAPSQVLTTCRTILGVSSVLAGYSVRKEAVSVDPEDSKQVYKYYMHLWKLFYASYLVLPFAR 433
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P573_9STRA) HSP 1 Score: 115 bits (287), Expect = 9.310e-24 Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 3
Query: 69 DAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTAASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
D C L+ +F VF +VIALMKDVPDV GDR N+ +FSV LG+ ++F RRLL+ L W+ +AA A A S S AA R + +A + G VR+ + V+PE QVY +YM LWK+FY+SYL LP AR
Sbjct: 312 DRACFLSSLFFGVFGLVIALMKDVPDVVGDRLANVKTFSVRLGQAQVFTGMRRLLSGLFWAVSAAFVNQAVRAFSNSSMGLAACRLVTAAASAWAGWSVRQESQSVNPEDSDQVYSYYMHLWKLFYMSYLVLPFAR 447
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZ17_9STRA) HSP 1 Score: 114 bits (286), Expect = 9.680e-24 Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = 3
Query: 3 QLAGYGLSEEKTALWALSLPFRDAKCALALAYFTVFAVVIALMKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTAASRGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 476
Q A YG T + L DA+CAL+ +F++F VIALMKDVPDVKGD+ NI + V G+ ++F RRLLT S A GA +A + R I+ +L+ G VR+ A VDPE QVY +YM LWK+FY SYL LP AR
Sbjct: 274 QAAAYGGGMGTTVIGCL---LSDARCALSSLFFSIFGFVIALMKDVPDVKGDKVSNIKTMPVRYGQDRIFGAMRRLLTISFLSIGAGFFRGA---VNAPTRVLTTCRSILGISSLLAGYSVRQEATTVDPEDSKQVYKYYMHLWKLFYASYLVLPFAR 425 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig934.17395.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig934.17395.1 >prot_E_fasciculatus_S2_contig934.17395.1 ID=prot_E_fasciculatus_S2_contig934.17395.1|Name=mRNA_E_fasciculatus_S2_contig934.17395.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=117bp MKDVPDVKGDRKFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAback to top mRNA from alignment at E_fasciculatus_S2_contig934:286..3412+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig934.17395.1 ID=mRNA_E_fasciculatus_S2_contig934.17395.1|Name=mRNA_E_fasciculatus_S2_contig934.17395.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3127bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig934:286..3412+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig934:286..3412+ >mRNA_E_fasciculatus_S2_contig934.17395.1 ID=mRNA_E_fasciculatus_S2_contig934.17395.1|Name=mRNA_E_fasciculatus_S2_contig934.17395.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=351bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig934:286..3412+ (Ectocarpus fasciculatus EfasUO2)back to top |