mRNA_E_fasciculatus_S2_contig9317.17379.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9317.17379.1
Unique NamemRNA_E_fasciculatus_S2_contig9317.17379.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9317.17379.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN4_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 2.950e-84
Identity = 223/274 (81.39%), Postives = 226/274 (82.48%), Query Frame = 1 
Query:    7 QELSECTTPHKKRASSWATLQDLAAETAEETLDGMAAGGTRTAAGXXXXXXXXXDVDIRKTISSPALQQMLSHRGLSAAAFPPSPTSAAGVSAGGGFGVGLGAVPPHLVGGGLAALPSSNIQAA----AAMPSGLGGVFSPGLGASISGDSAASTXXXXXXXXXXXXXXXXXXXXXXXXXGPGMVGANPPPDVNAFSSAAXXXXXXXGASMNPLQLASXXXXXXXXXXXXXXXXXXXXXRMGGGGAPGGALMQQPGMVGAVA-RGAGTEDMMST 813
            QELSECTTPHKKRASSWATLQDLAAETAEETLDGM  GG      XXXXXXXXX VDIRKTISSPALQQMLSHRGLSAA  PPSPTSAAGVSAGGGFGVGLGAVP HL GGGLAALPSSNI AA    AAMPSGLGGVF+PGLGA +SG SA ST      XXXXXXXX           GPGMVGANPPPDVNAFSSA XXXXXXXGASMNPLQ A XXXXXXXXXXXXXXXXXXXXX  GG GAPGG +MQ PGMVGA A RGAGTEDMMST
Sbjct:   12 QELSECTTPHKKRASSWATLQDLAAETAEETLDGM--GGXXXXXXXXXXXXXXXXVDIRKTISSPALQQMLSHRGLSAA-LPPSPTSAAGVSAGGGFGVGLGAVPSHLGGGGLAALPSSNIPAATAAAAAMPSGLGGVFAPGLGA-MSGGSAVSTASGGAVXXXXXXXXAPPSGEPAG--GPGMVGANPPPDVNAFSSAXXXXXXXXGASMNPLQRAXXXXXXXXXXXXXXXXXXXXXXXXGGAGAPGGVMMQ-PGMVGAAAARGAGTEDMMST 278
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9317.17379.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.950e-8481.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9317contigE_fasciculatus_S2_contig9317:3701..5954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size816
Hectar predicted targeting categoryother localisation
Exons3
Cds size816
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842582.2568722-CDS-E_fasciculatus_S2_contig9317:3700..37691696842582.2568722-CDS-E_fasciculatus_S2_contig9317:3700..3769Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9317 3701..3769 +
1696842582.2682052-CDS-E_fasciculatus_S2_contig9317:4382..47081696842582.2682052-CDS-E_fasciculatus_S2_contig9317:4382..4708Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9317 4383..4708 +
1696842582.2810965-CDS-E_fasciculatus_S2_contig9317:5533..59541696842582.2810965-CDS-E_fasciculatus_S2_contig9317:5533..5954Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9317 5534..5954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9317.17379.1prot_E_fasciculatus_S2_contig9317.17379.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9317 3701..5954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9317.17379.1

>prot_E_fasciculatus_S2_contig9317.17379.1 ID=prot_E_fasciculatus_S2_contig9317.17379.1|Name=mRNA_E_fasciculatus_S2_contig9317.17379.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=272bp
MEQELSECTTPHKKRASSWATLQDLAAETAEETLDGMAAGGTRTAAGAGT
NNNNNSDVDIRKTISSPALQQMLSHRGLSAAAFPPSPTSAAGVSAGGGFG
VGLGAVPPHLVGGGLAALPSSNIQAAAAMPSGLGGVFSPGLGASISGDSA
ASTAAVAGGPVGGFPLGMTAPPSGEPAAGPGMVGANPPPDVNAFSSAAAA
AAAAAGASMNPLQLASMNMIASMNMNLGVKMGLDLAARMGGGGAPGGALM
QQPGMVGAVARGAGTEDMMST*
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mRNA from alignment at E_fasciculatus_S2_contig9317:3701..5954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9317.17379.1 ID=mRNA_E_fasciculatus_S2_contig9317.17379.1|Name=mRNA_E_fasciculatus_S2_contig9317.17379.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2254bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9317:3701..5954+ (Ectocarpus fasciculatus EfasUO2)
ATGGAACAGGAGCTGTCAGAGTGCACGACGCCGCACAAGAAGCGGGCTTC
GTCCTGGGCAACCCTGCAGGTGAGTCTTGCTTTACCTTTGCCTTTGTTCT
CCTCTGTTTCTTTTTTTTTTCCGTGTTTCCTGCGCGCTGGGCCTTCACTG
CAATGTATCACTTGCTGTCGTTGGTTATCGTTTTTTGTGAATTTCTTGCC
GTGGGCTAGGATCGGGACCCTTCCAATTTGTGTTTTTGCGCTTCAAGTAT
ATTATGTCGGTCCTATTTGTGCGTGTTTATTTCTTGTCTCTGCATTGCTC
AGGACCTCGCCGCCGAGTCATATCGTCCTTGATCTTAGTTTTTGTACTTT
GCATCAATCAGGGCCTCGCCGCCGAGACAGCCATGTCAGATCGTCCATTT
TACGCGTTTTGATTGTCTTTGCATTCAGTAGGACCTGATCATTGTAGTTG
TGCATTGAACAGGATCTCCGCGCCGAGTCCGCCGTGTCAGATCGTCCCGT
TCAATGTGTGTCATCTTGTTGTGCATTAAAAAGGGCCTGCTCGTCCCGTT
CAATGTGTGTCATGTCGTTCTGCAAACAGAATAGGGCCTGCTCGTCCTGC
TCAATGCGTGTCATCCTGTTGTGCATTTATTAGAGCCTGATCGTCCTGCT
TGATGTGTGTCATCTTGTGGTGCATTAAATAGGACCTCGCCGCCGAGACC
GCCGAAGAGACCCTGGACGGAATGGCAGCGGGGGGCACGCGAACGGCAGC
AGGGGCGGGTACCAACAACAACAACAACAGCGACGTGGACATCCGGAAGA
CGATCTCGTCTCCAGCGCTGCAGCAGATGCTCTCGCACCGCGGACTGTCC
GCCGCCGCCTTCCCGCCGTCCCCTACCTCCGCGGCTGGCGTTTCGGCGGG
GGGCGGCTTCGGGGTAGGGTTAGGGGCGGTGCCGCCTCATCTAGTGGGTG
GGGGATTGGCAGCGCTGCCCTCTTCGAACATCCAAGCTGCTGCTGCTATG
CCTTCGGGGTAAGTAAGACTAGATTTTTTGCTTTTTGGTCAAAAGAGATG
GAGATAAATTCTCGTCGTGCCGCAGGCGTTACCGACCGCCGTCCACGAAG
TTAATATGTGGGATCTTCAGGCATGATGCTATAGTGCATTGGTAGTGTCA
GAGCGACCATCTCCCTTTAGCAATCCATCGTGGGGGGAATGTAGAAGTGC
ATCCCCCCCTTCCGGTACCTCCTCTGGTTATGAGCAATCAGCGTACTCTT
CGATCTTGTTCTTAAGAGATGATGGGAATAAGGAGGAGGTGCGTAGCCAA
GGTTTTCATTTCCTTCTCTAGCCATCTCGAATCAAACGCGAACCCACGTT
CTGATCCCGAGAAGAAGTGAGAAAAGAGGAGAAACTTCTCTTGAACTAGA
ATACAAGGAGGAAGAAACTTATCTTCCTCACCTTTGTCCTCTCCGCCTCA
TCCGGTCCCCTCCTTTGCAGTAGCATGGTGTCTCTCCCTCCCCACCTTAC
CTTGTGCCGAAAGACAACCTTTACCATCACCCGTCTTCTCCTCTCTCTGG
AACCCTTCTTTATATGTATCTTGTAGGCAGCTAGCTGTTCGCCGTGCATC
GATCGCTACACGGAACATGCCGCATGACCGTACTATTATACGAGTTCAAC
TGCTCTCTCGCGCGCAAATGATGGGGGCCGAGAAAGAGTCGCCACTCGTT
GCTGTCGCTACACCTTGCAACGCCCTATATGCCGTGCGACTCTTGTCCCC
TCACACATCTTCTGGACCTTTGGTTATCGTGCGACGCCAATATATGTCGT
GCGACTTTAACCCCTTCCGGACCACGAACAAAGGTTGGGAGGCGTGTTCT
CGCCGGGGCTCGGTGCTTCAATCAGCGGGGATTCCGCGGCATCAACGGCG
GCGGTGGCAGGGGGCCCCGTCGGTGGATTTCCTCTCGGCATGACGGCCCC
CCCGAGCGGCGAGCCGGCGGCTGGACCGGGGATGGTGGGCGCGAATCCCC
CCCCCGATGTTAACGCCTTTTCCTCCGCGGCGGCGGCAGCGGCGGCGGCG
GCCGGAGCCTCGATGAACCCGCTACAACTCGCCTCCATGAACATGATCGC
GTCGATGAACATGAACCTCGGCGTGAAGATGGGGCTAGACTTGGCGGCGC
GGATGGGGGGAGGGGGGGCGCCGGGGGGGGCGCTGATGCAGCAGCCGGGC
ATGGTCGGCGCCGTTGCTCGGGGAGCAGGGACGGAGGACATGATGTCGAC
GTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9317:3701..5954+

>mRNA_E_fasciculatus_S2_contig9317.17379.1 ID=mRNA_E_fasciculatus_S2_contig9317.17379.1|Name=mRNA_E_fasciculatus_S2_contig9317.17379.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=816bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9317:3701..5954+ (Ectocarpus fasciculatus EfasUO2)
ATGGAACAGGAGCTGTCAGAGTGCACGACGCCGCACAAGAAGCGGGCTTC
GTCCTGGGCAACCCTGCAGGACCTCGCCGCCGAGACCGCCGAAGAGACCC
TGGACGGAATGGCAGCGGGGGGCACGCGAACGGCAGCAGGGGCGGGTACC
AACAACAACAACAACAGCGACGTGGACATCCGGAAGACGATCTCGTCTCC
AGCGCTGCAGCAGATGCTCTCGCACCGCGGACTGTCCGCCGCCGCCTTCC
CGCCGTCCCCTACCTCCGCGGCTGGCGTTTCGGCGGGGGGCGGCTTCGGG
GTAGGGTTAGGGGCGGTGCCGCCTCATCTAGTGGGTGGGGGATTGGCAGC
GCTGCCCTCTTCGAACATCCAAGCTGCTGCTGCTATGCCTTCGGGGTTGG
GAGGCGTGTTCTCGCCGGGGCTCGGTGCTTCAATCAGCGGGGATTCCGCG
GCATCAACGGCGGCGGTGGCAGGGGGCCCCGTCGGTGGATTTCCTCTCGG
CATGACGGCCCCCCCGAGCGGCGAGCCGGCGGCTGGACCGGGGATGGTGG
GCGCGAATCCCCCCCCCGATGTTAACGCCTTTTCCTCCGCGGCGGCGGCA
GCGGCGGCGGCGGCCGGAGCCTCGATGAACCCGCTACAACTCGCCTCCAT
GAACATGATCGCGTCGATGAACATGAACCTCGGCGTGAAGATGGGGCTAG
ACTTGGCGGCGCGGATGGGGGGAGGGGGGGCGCCGGGGGGGGCGCTGATG
CAGCAGCCGGGCATGGTCGGCGCCGTTGCTCGGGGAGCAGGGACGGAGGA
CATGATGTCGACGTAA
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