mRNA_E_fasciculatus_S2_contig9316.17378.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9316.17378.1
Unique NamemRNA_E_fasciculatus_S2_contig9316.17378.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9316.17378.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV5_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.630e-13
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   13 QAKLEALELADXXXXXXXXXXXSDNKKLLGEVDTMKKLIPKPQGGASGGVDAGGGQVLAQKQETK-TKEDFWQEAENPVAPATDHQLVTHDQLKEFAALQDEKHREH 330
            QAKLEALE+              +N KL  +V TM+K IPKPQG  S  VD GGGQ LA K++ K T+E+ WQE     A A D + VT +QL+ FA +QDE+HREH
Sbjct:  591 QAKLEALEI--------------ENGKLTRKVSTMEKNIPKPQGEPSDEVDVGGGQALALKRKVKKTQEEVWQEMAESAA-AADQRPVTQEQLRRFAEVQDERHREH 682
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BLAST of mRNA_E_fasciculatus_S2_contig9316.17378.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.850e-13
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   13 QAKLEALELADXXXXXXXXXXXSDNKKLLGEVDTMKKLIPKPQGGASGGVDAGGGQVLAQKQETK-TKEDFWQEAENPVAPATDHQLVTHDQLKEFAALQDEKHREH 330
            QAKLEALE+              +N KL  +V TM+K IPKPQG  S  VD GGGQ LA K++ K T+E+ WQE     A A+  + VT DQL+ FA +QDE+HREH
Sbjct:  589 QAKLEALEI--------------ENGKLTRKVSTMEKSIPKPQGEPSDEVDVGGGQALAFKRKVKKTQEEVWQEMAESAA-ASGQRPVTQDQLRRFAEVQDERHREH 680
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9316.17378.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Reverse1.630e-1349.53transcriptase domain-containing protein n=1 Tax=Ec... [more]
Leucine2.850e-1349.53rich repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9316contigE_fasciculatus_S2_contig9316:219..6080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score83.6
Seed ortholog evalue7.5e-14
Seed eggNOG ortholog2880.D7G8A7
Model size1189
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E19U@1,2S8MQ@2759
Cds size384
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9316.17378.1prot_E_fasciculatus_S2_contig9316.17378.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9316 2726..6080 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842582.162872-UTR-E_fasciculatus_S2_contig9316:218..9991696842582.162872-UTR-E_fasciculatus_S2_contig9316:218..999Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9316 219..999 -
1696842582.1761405-UTR-E_fasciculatus_S2_contig9316:2701..27251696842582.1761405-UTR-E_fasciculatus_S2_contig9316:2701..2725Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9316 2702..2725 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842582.1869109-CDS-E_fasciculatus_S2_contig9316:2725..28651696842582.1869109-CDS-E_fasciculatus_S2_contig9316:2725..2865Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9316 2726..2865 -
1696842582.1992705-CDS-E_fasciculatus_S2_contig9316:4548..46231696842582.1992705-CDS-E_fasciculatus_S2_contig9316:4548..4623Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9316 4549..4623 -
1696842582.2135568-CDS-E_fasciculatus_S2_contig9316:5039..51031696842582.2135568-CDS-E_fasciculatus_S2_contig9316:5039..5103Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9316 5040..5103 -
1696842582.2273614-CDS-E_fasciculatus_S2_contig9316:5975..60801696842582.2273614-CDS-E_fasciculatus_S2_contig9316:5975..6080Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9316 5976..6080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9316.17378.1

>prot_E_fasciculatus_S2_contig9316.17378.1 ID=prot_E_fasciculatus_S2_contig9316.17378.1|Name=mRNA_E_fasciculatus_S2_contig9316.17378.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=128bp
DERRQAKLEALELADERRQAEFEVLQSDNKKLLGEVDTMKKLIPKPQGGA
SGGVDAGGGQVLAQKQETKTKEDFWQEAENPVAPATDHQLVTHDQLKEFA
ALQDEKHREHDDRHREHDATSAGIRGH*
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mRNA from alignment at E_fasciculatus_S2_contig9316:219..6080-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9316.17378.1 ID=mRNA_E_fasciculatus_S2_contig9316.17378.1|Name=mRNA_E_fasciculatus_S2_contig9316.17378.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5862bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9316:219..6080- (Ectocarpus fasciculatus EfasUO2)
GATGAGAGGCGGCAAGCAAAATTGGAAGCGCTAGAGCTCGCCGACGAGAG
GCGGCAAGCAGAATTCGAGGTATTACAGTCTGACAACAAGAAGCTTCTGG
GCGAGGTAAGCCGAAGTCGTCATTGCTTGCATTGCTGTGTACGCGGGGAA
CCGAACACCGTAAGAGGCCGTGACAAGAATTCGAAGTGTTCGTTTTCGTC
GGAAGAAGTGAACTCATCTCATTGTTGTTTTCCGCGGTCACGTTTACCAC
TTGTTCTTTTTCAAGGTCTCCCTTCGAGACGTGGGTGTCAAGCCTCATGC
GGGTGACGCAAGACCATATGCGCATTGCCCGAAGACAGGCTGGGCCCCTA
CTTTTTATGGACATTGTTACGCTCGTATTCCGTATTTTGTAGTTGTTCTT
CATTGGAGCCAGATCGAGCGGACAACAGCTTACCAGCAAAAAAATCAGAC
TGCTAAAAGATGTTGAGATGTTGTGATTGGTGATGGCATATATTCAATAA
TCAATGAGAATCGCATGTCCGAAGCAACACCACAAACGAACATATCATCA
GCACGGCGGGTGCATGCGCTAAGACTTGCCTACAGCAGCAGCGTTTCACG
TGGCCCCCTGCGAAGGATTTCAGAGCTAACGTAGACACTGTTGGACGTCG
GGATGACACGAAGAGTCCCAGCGGTCGATATGGAATCAGCGAATGAATGA
ATGAATGTGGATATCTCCGAGATGGAAAGAGGAAAATATTTCAAACTGTC
GGTTTTGATGGGTTTCAGAACTGGTTCGGCAGGCTTTCTCGCGACTTTGA
GTCAACCACACGCGCTACGTTTGCCTGCCGAGCTCTGTACACGGGCGTTA
ATGTACCGACGAGCCTCTTGCCTACCCCTGAGAAGTAATCCCGAGAAATG
ACTCGCTGGGGCGTGAGAAAGAAAAACTGAGGTATGAACAATGACCAAAT
GTTACCACATATGTCGTCTCCGGCTAGGTGGACACCATGAAGAAACTCAT
TCCAAAGCCTCAAGGGGGGGCGAGCGGCGGCGTGGATGCGGGTGAGGCCA
TGACCTGTTTTTACTGCATGGCCATCGTCGCGATAACTCCACGTGTGCAG
AGCAGAGTGGCAATCCCATCTATTGCCTCGCTCTCTGCGGTGTCTGGTCG
GTGGTCTCGACTTGATATTCTTGAAGCTGTGTGCGGAATTCTCATATATT
ACAGGTTGTATGGTGGCAATGGTGGCAACCAGACGCCTTTTTGGTGCCCA
CTAGGACTGGCACCGGTCGCCCCGGTGGTCTAGTGAAGACCTCGAAACCT
CTAGTCGACCACGGAGAATGGGGGCACTGTCGCCATTATAGAGGACGAAA
CACACACAACACACCAGACGTGACAGCTCGGCTTCGCGCGACCTTCCCGG
CTGTTGCCAACATCGATTTGTTTTTGCGCATCTGTCCAATGGCGACCACT
TTCAAAGGAGGAGGGCAGGTTCTTGCTCAAAAGCAGGAGACTAAGACCAA
GGAGGACTTTTGGCAAGAGGCCGAGAATCCAGGTGTGCCCGCAAAAGTAG
TTTGGCTTAATACAGTAGACGGAATCATACAGTTCATTTCATATCGCCGA
AACACCTACCGTGCGCGACCAAGTGTTAATCAAGTGTTGGGTTGCCGCGC
CTTATCTGCGATAGATCGCTTGCGATTCCTGCCAGATATCGTTTAAAGGT
CCGAAGTTCATATCCGAGTATTGACTTTCAGCAGTTGCTCCAGCTTTGTC
CTAAAATTTAGCTTCAAAATATGGCAAACCTACGAAGTAGAAACACAATT
GGTGCCAGCGACAAACTCGGCCGACGCACCGATCGTGAGGGCGTGAAAAG
TATACTCCAATCGCCGTTGGGGGCAAGTAGTGGTCATGGCCCAAGCCACT
TCCCCACTTCAGCTCTGGCAGCACTCCGGTGGTGCCAATAACGTATCCTA
GGCAGGTTGACGGCCCCGGGTTCTTTGCGCTCGCACTCACTGAATTCCGC
ATGCCTTACTTGATTCCTCGGTAGTATCTTTAGGTAACGCCACCTCCCTA
CACGCCTCATGTCTCGATCGTAAAACAACACACAGAATGTTCTTGGCTGT
TCGCCGTTCGGGTTCACTTTATGGGATCTGACGGGATTGATTTTCACTAA
ATATCGTGTGCTGAATAGTTCTCCTAGATTTGTTTTAGAGCATATGCTGC
AAAAGCAACCACATTTGCCGTTCCCTCTCAATGAACTGCGGCCGGAGTTT
TGAACTTCAGTTTCCCCTCAAACATGTACCTGGTACGTTCGGGAGGACTA
CGGTCAGAAGGAAGGTTTATGGTATCTTCTACCCATGAACGGAAGGGCTT
TGGTCTAGCGATGTCCCCTCTGGGGTCGGCATACCGTTTTATCGTCGTAA
GCCCCCTCCATGTCGTAGCCCCCCGCCCAAAAACTACCGCCGGGGTACAC
ACAACGTTTGTCGTAGCCCAGGAGTTACCGGGAGGGGGGGAGGTGTCTTT
TTTTCGCCCCTCCACGCTCGCGTTAGCCCCGGAGTGTTCCCCTTTATGGG
AAAATTATTGGGGCACCCCACGGGACTTTCGCGCGCAAACCCTCGGCATT
CTTTTGTGGCAGCATTCTCGTGTGTGCATACCAGTGCCGTATTTGTTGTT
GTGACTGGTCTGGTGTTGTTGTCAGTGTTGGTGTTCCCGACATCGTGTCG
AGTGTGTTGTGTTTTACAGCAGCTAAAAAGAGACAGCGCGCCCCGTTTTT
GTTCATGAATAGTAAATACACACACAGAAAACTACCCGTTCTAGACATAA
CCAAGTCTTTATTGTGAGTGGGCAGAAAACCGGCTGGTTACTGGGCTTAT
TTTGTGTCTGTTTTAAGCCTATACACTGAATTTTTGTCAGCGATGCCAGC
AGGTGCTACGCACAAAAACATAGATTTTTTTTTCGGAAAGCATCGCCCCT
CTACCTTTGTCGTTACCTCGGGGTGTTTGGTTTCAGCAGAATCTTGGTTT
CAACAACATCAAATGATTACCCAGGCTGCGACAAAGGATATTTTGCGGTA
TCTGGCCCTAAACGCGACAAATTTAAACCGGTGGCTGCGTTGCCTTCGAA
CTAATGTACTGTTTTGAGAACTGCGAGGAGTCGTGACCAGCTGCACGGTT
CACACCGTTCCTATGCTTCGTTTCTTTCTTGTTTTTTTCCCGGTTGCTGA
TGTTTTCTCTACCAGTGGCGCCGGCGACTGACCACCAGCTGGTGACCCAC
GACCAGCTGAAAGAGTTCGCGGCACTCCAGGACGAAAAGCATCGCGAGCA
TGATGACAGGCATCGCGAACATGATGCCACTTCAGCCGGCATCAGAGGGC
ACTAGACGCCAAGAAGGACAAGCGAACATGTGGGTTGGCGAGGCCGACGG
ACACTACTGCGTGTGGCCCTTGGCCCTCGCTCGTTCACGTTCCTTGCACA
TTTACTTGCATAGAGCACACTCAAGTACACTGCAGAATGACGTGCTAGGA
TCTCCTCGAAGACTACCAAGGCGAGCCTAGGAACAAAAATACGGTATGCA
CTTGTTTTTTGGTAAGTTTTCGTTCTTCCGTCACGGTTAGGGGTACTCAA
GGGTTGGTCTCCTTATGCGTTTTGTACATCAAAATGAACTTGACGGTGCA
ATGTTCTTGCCCGTGAGTGTTTGGATTGTTTGATTTTTCTGTATATGTAC
ATGCATGTAAGATTTGGTCACTTTTCATGGTTCGGCGATTCTTTCTACCG
CGGCAGCGAGTCTTTCTCGCGGTTCCTTCTCAGGGGCACGCAGGAGGCTC
GTCGGTACATTAACGCCCGTGCCCGGAGCTCGGTATGCCTCCGTGGCGCG
TGTGGTTGACGGCCAAAGTTGCGAAAACTGGCTCAAAACCCCGGGACGCG
TTCCGCGCTGACAAAGCCTGGCGAATCAATTGTGAAACCTATCAAACCCA
TCAATACGACGGTTTGAAATGTTTCCCTTTGCTTCTCCACTTTCATTCGT
TCATTCATGCGTTCGTCGATTCATCGCTGTGACCCTTCGTGTCATCGCGT
TGTCCAACAGCAGTACCTACATTTTCACTTCGCAGCGGGCCAACTGTAGA
CACGTCTGAGAGCATGCATCCGCAGTTTTGAACATGTTTTGTTTGTGGTG
CTGTTTCGGCTTCAAATTCGGTTCTCATCGGAATCTGCGGTCATCAATGA
AAGACATCATGGAAGTCTGATTTTTCGCTGGCAAAATATTGTCTGCTCGA
TCTGGCTCCAATGTACAACAACAACGTGCGCGATGTTTTTGTGCGGAAAG
GCAAGCGTTGTAAGACACACAGTCCCTCTTCGGGCAATCGCATGTGGTCT
TGCTTCACCTGAGGGACCACGTCCCTAAAGGGAGACCTTGTACTTTATCA
AGTTTTTGTTTCGAGGAGAACATACGCGTAGCCACCTTCATTTCGAATCT
TGTTTGACAACGACACCAACTAGGCTTAGTCTTTCTTCCCAAACTGTTAG
GTTTTCAGTCTTGACCCGGAAATGAACTTTCTTATCGCAGGGCAGCGGCT
GTTAAATCTTGCGCGTGCAGAAGTCTGGCCGCGCTATCCGAATGTAGGTT
TCGTTCAAAGCCGGTCCTCATGAGTTGAAAGGAAGCTCAACAAGCGGAGG
CTTTCCGGAGGTCGAACGCGCAGACTGGTTGGTATGTTTCCTTCTCTGCG
CCGCTCGACAGCCCACTCTCCTTGTCATGCATATATTAGCTCTATGCTAC
CCCCGTGCACAGCTCATTTTGCATCACCTCTTTGTTCTCGTGCCGGTCAC
CGCGCCACATGGAAACGTCAGATCTGCTAGTCTTTCATAACTTCCAAGGG
ATGTATTGTAGATTTTCCGTTGTTTGGCTTCGTTTCCTTGGTGGGTAAGC
AAAGCTAGCTCAGTTTCCCCCCACTGTTTGGTTCATTTGCCCACCGCAAG
CGACCCCGCTGCGGACCATGCTTCCTGTTGCCGCGAAAAATTGTCTTGGA
CTTACAACAACGATACCGCCGCCAATGCTCTGCCGGGCGCTATCACCCGC
TGTGTTGCCGGGGTTTCGTACGTTATCGCAGGGCGCAGATGACCCTCCAC
AACGAGCACGGTCGACTTTCAAGCCACGGCCACCACCACTCTGTGCGCCT
GCAGATTCAGGTCCAATAACGATACGCTTCAGCTGCGCGCAGTACGATTG
AATGGAAACGGTAATATTCCTTCCCATTACATGTAGTTTGCGTAGGAAGA
GGGCAGGTTTGTTCCTGAACGGGATGTGCAAACACAATGTGTTTGGTCTC
AAGCAAGGCCCCCAACACAGGCATGGGGGTGTTTGTGGCAAACGGACAAG
CGAAAGAATTTGGAGAAATGCATCCCAGCCTGGCTCGAGGGGTACATATT
TGCGTGCGATTTACCTCCGTGGCGTGCGATTGTTGTTGCTCATTTTTGCT
CTGCTTGATTTTTCTTGTGGTTTTCACAATTTCATGTGACCTTGCATTGA
AGAGCAATAGGCCCCGGCTCTTCGAATATGTCTTGTTGATGCTTCTGTTT
TCTGGGTTATTCTTTTTACCCTGTTTGGGTAGATAGCCGATGGTCGCAGA
AGGCTCCTGGGTCGGGCATGTGTGAACTTCACAGGGGACTGACTGGGCAA
AAGATCGGACCGTAATGATTTTTGGTGCAACGAAACCAATATATTTGCAG
CAACACTAAAGCAATATTTTGGATACGATGAAGCGCTTGGGCCTTGAGCG
ACGACTGTATGCAGTTTTTTTAGGCACGGCGTTGAGATTTCTAGGTTGGT
ACACCGGTTTTTATGGGAGCCGAATGTTGCAAAGAAAGCTGCAACAAAAG
TTGCAAACTTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9316:219..6080-

>mRNA_E_fasciculatus_S2_contig9316.17378.1 ID=mRNA_E_fasciculatus_S2_contig9316.17378.1|Name=mRNA_E_fasciculatus_S2_contig9316.17378.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=384bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9316:219..6080- (Ectocarpus fasciculatus EfasUO2)
GATGAGAGGCGGCAAGCAAAATTGGAAGCGCTAGAGCTCGCCGACGAGAG
GCGGCAAGCAGAATTCGAGGTATTACAGTCTGACAACAAGAAGCTTCTGG
GCGAGGTGGACACCATGAAGAAACTCATTCCAAAGCCTCAAGGGGGGGCG
AGCGGCGGCGTGGATGCGGGAGGAGGGCAGGTTCTTGCTCAAAAGCAGGA
GACTAAGACCAAGGAGGACTTTTGGCAAGAGGCCGAGAATCCAGTGGCGC
CGGCGACTGACCACCAGCTGGTGACCCACGACCAGCTGAAAGAGTTCGCG
GCACTCCAGGACGAAAAGCATCGCGAGCATGATGACAGGCATCGCGAACA
TGATGCCACTTCAGCCGGCATCAGAGGGCACTAG
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