mRNA_E_fasciculatus_S2_contig931.17372.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig931.17372.1
Unique NamemRNA_E_fasciculatus_S2_contig931.17372.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig931.17372.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig931contigE_fasciculatus_S2_contig931:21306..22661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1027
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_001570.1
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842581.58793-UTR-E_fasciculatus_S2_contig931:21305..221011696842581.58793-UTR-E_fasciculatus_S2_contig931:21305..22101Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig931 21306..22101 -
1696842581.637713-UTR-E_fasciculatus_S2_contig931:22658..226611696842581.637713-UTR-E_fasciculatus_S2_contig931:22658..22661Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig931 22659..22661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842581.6069746-CDS-E_fasciculatus_S2_contig931:22101..221521696842581.6069746-CDS-E_fasciculatus_S2_contig931:22101..22152Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 22102..22152 -
1696842581.6239035-CDS-E_fasciculatus_S2_contig931:22481..226581696842581.6239035-CDS-E_fasciculatus_S2_contig931:22481..22658Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 22482..22658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig931.17372.1prot_E_fasciculatus_S2_contig931.17372.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig931 22102..22658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig931.17372.1

>prot_E_fasciculatus_S2_contig931.17372.1 ID=prot_E_fasciculatus_S2_contig931.17372.1|Name=mRNA_E_fasciculatus_S2_contig931.17372.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=76bp
MIFKCPSMSTMLFQGFHLHCVQAPSFLTSIELLEGIEDISPSDVEIIERW
IETGVAPGMEGCSAAAHNHQRRKTA*
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mRNA from alignment at E_fasciculatus_S2_contig931:21306..22661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig931.17372.1 ID=mRNA_E_fasciculatus_S2_contig931.17372.1|Name=mRNA_E_fasciculatus_S2_contig931.17372.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1356bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig931:21306..22661- (Ectocarpus fasciculatus EfasUO2)
CAGATGATCTTCAAATGCCCGTCTATGTCCACCATGCTCTTCCAAGGGTT
TCACTTGCACTGCGTTCAAGCCCCGAGCTTCCTGACATCAATAGAACTTC
TTGAGGGAATCGAAGACATATCGCCGTCGGACGTCGAGATCATCGAGCGG
TGGATAGAAACGGGAGTGGCTCCTGGAATGGTAAGCATGAGGTTAGCCCC
CCCGCCGAGTAGTCGAGGAACGCCGGACCTGTCAACAACCCGTAGTGTTA
TAAAACTGCTGCATGTGACTAGTATGCGGCAAACCGTGGTCTTCGCATGT
AGTATAGCATGGTATGCATACGTTTCCATTAGTACTGCCGTAACTGCTGC
TTTATTATTTGTCTTGTGGAAGCATAACCTATAGAAGTTGTCTCGTACGA
TATCAGAGATATTGAACTTGCGCAGCCGGCAAGATTATTAAAAATACTGC
TGTACACTACTCATTGCGCTGATAAATGGTGCGGTGGGCGGTGCTTCCTC
TTGGCGCAGGAGGGATGCTCGGCTGCGGCACACAACCACCAACGACGGAA
AACGGCATGAATCGGGTCTTCGTCTTGTGCACGTGGAGGCTGGAGACAGT
GAAGCCCTTGCTTTGTGCGTGTACCGTCCTACTGATGTATTGATTGGTGT
GTATTGCTCTAGACTACTTGTGAACTATTTTTGGTCACGCTTTATTCATG
TTTCTTGTGCCACCCGTTTGACCCTGGATTGTCCCGACCAGGTTGCTTGA
GGTTGTGAAATTGTGTGCGAATTTTTAGATACAATCATTTTTTGGTCTCG
CTGTTTACTTGGGATTTCGCTTTCCCCTCCACCCCGGGTGCGCCCGATCT
GGTCGTCGGTGAATATGTCGCATTTGCTTGTTGAAATTTGGGCATGGCGT
CCACGTGTCCACCCGTTTGGTGGGAAGGCTAGGAACTGCGCTGTAGCGAA
GCAGTAGACTAGCGGTTTGCTCCCCGCTGGGTTCTTGTTCTTCAACAGAC
GGAATTCCTTGGATAGTTCATGTGTTAGGCTGTGTATGTCATGTGTGTGG
TGGTTGGTGTAACCGTGGCTAGGTTTTAGGCGGACGCAAGCTAGAAGGGC
AGAGCTTGCGGCTGGAGTTTGCGTCACGCTAATTTTACGTACATTATTCT
GCTCAAAATAATTAGGTAGGACTTTTACATGCAGTAGTCCCACGTTCTGC
GAGTTGAGATTTATGAGTCCTCGGCTGTAGAAGTTCAGCGGCGATTTAGA
CGAAGGACGACATAATAGATCAATGTACGGTATGCAAGGTGTTGACACAA
TCCTTATCCTTTGACTCGATCGGACCAATGTGTGCTTCCCATTCCCTCCT
TCGAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig931:21306..22661-

>mRNA_E_fasciculatus_S2_contig931.17372.1 ID=mRNA_E_fasciculatus_S2_contig931.17372.1|Name=mRNA_E_fasciculatus_S2_contig931.17372.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=228bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig931:21306..22661- (Ectocarpus fasciculatus EfasUO2)
ATGATCTTCAAATGCCCGTCTATGTCCACCATGCTCTTCCAAGGGTTTCA
CTTGCACTGCGTTCAAGCCCCGAGCTTCCTGACATCAATAGAACTTCTTG
AGGGAATCGAAGACATATCGCCGTCGGACGTCGAGATCATCGAGCGGTGG
ATAGAAACGGGAGTGGCTCCTGGAATGGAGGGATGCTCGGCTGCGGCACA
CAACCACCAACGACGGAAAACGGCATGA
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