mRNA_E_fasciculatus_S2_contig93.17352.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE) HSP 1 Score: 567 bits (1462), Expect = 9.840e-200 Identity = 284/300 (94.67%), Postives = 288/300 (96.00%), Query Frame = 3
Query: 3 HGFRSISSGNGGTRVRAAT--AATNEVGEVQVEERPWLGNGPDPMASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
HGFRSISS NGGTRV AT AATNEV EVQVEERPWLGNGPDPMASTGK RPGTSASLGAA VGE GGKGKGVA EEMWLNGPFNAPVPPGPL++LFVD+EIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVL ADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVL+RAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSL LADRCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct: 31 HGFRSISSCNGGTRVHVATTAAATNEVREVQVEERPWLGNGPDPMASTGKIRPGTSASLGAAVVGEPGGKGKGVAAEEMWLNGPFNAPVPPGPLDILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridylate (synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI) HSP 1 Score: 498 bits (1281), Expect = 2.050e-173 Identity = 246/256 (96.09%), Postives = 250/256 (97.66%), Query Frame = 3
Query: 129 MASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
MASTG+ RPGTSASLGAA VGEAGGKGKGVA EEMWLNGPFNAPVPPGPLE+LFVD+EIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVA+VHGVL ADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGT DSLALA RCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct: 1 MASTGQVRPGTSASLGAAVVGEAGGKGKGVAAEEMWLNGPFNAPVPPGPLEILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridylate (synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA) HSP 1 Score: 225 bits (574), Expect = 3.190e-67 Identity = 119/232 (51.29%), Postives = 150/232 (64.66%), Query Frame = 3
Query: 216 VAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDR-----AADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
++PEE W+ GP++V++ DD I+VCNKPS LL VPG KD L +R A++ G R+D+M+VHRLD ATSG V+ ARTD AL+ L+ FR R+V K Y A+V+G ++ D GEV P+ ++ PPL +++ GKP T W VL R AD TRV L PV+GRSHQLRLHM +GHPILGD Y + ALA RCLLHA TL RHP TGE F P EF
Sbjct: 3 LSPEERWMR-------VAGPVDVVYSDDHIIVCNKPSGLLSVPGITLKDCLVSRVAVKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALHEDFRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM) HSP 1 Score: 206 bits (525), Expect = 2.970e-60 Identity = 110/209 (52.63%), Postives = 145/209 (69.38%), Query Frame = 3
Query: 276 LEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
+EVL+ DD +V+ KP+DLL VPGR +D L R E R IVHRLD ATSG +++A + ++L+RQF +R+ RKRY+A+V G L +G V+LPL + P MV+ + GKP+LT++R+LD+A DR+RVELIP++GRSHQLR+HM A+GHPILGD FY T +LA ADR LHA L +RHP +GER FTAPC F
Sbjct: 2 IEVLYQDDSLVIAVKPADLLSVPGRGPENQDCLLHRLQSEFPTAR----IVHRLDCATSGVMVLALDADSHRELSRQFHDRETRKRYIAVVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridine (synthase n=4 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A291HLR0_9GAMM) HSP 1 Score: 206 bits (523), Expect = 1.010e-59 Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = 3
Query: 249 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
++ P+ P EVL+ D+ ++V NKPS LL VPGR I +DSL+ R A +V VHRLDMATSG ++MA A ++L+RQFRER+ KRY A VHG L D G +DLPLC + P HMV+ EHGKP+LT WR L R DR+ VEL P++GRSHQLR+HM ++GHPILGD+ Y + ++LA+A LHA L RHP++ + F+AP F
Sbjct: 6 YDPPMDPQ-FEVLYQDNSLIVLNKPSGLLSVPGRELIHRDSLSYRVARVYPGVQV----VHRLDMATSGVIVMALHPKAHRELSRQFRERETAKRYYAWVHGRLEQDAGSIDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPDRSLVELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALAMAPHLQLHAAWLAFRHPRSKQWLEFSAPAPF 218
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: RluA (family pseudouridine synthase n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI000371F359) HSP 1 Score: 204 bits (520), Expect = 2.540e-59 Identity = 109/210 (51.90%), Postives = 144/210 (68.57%), Query Frame = 3
Query: 273 PLEVLFVDDEIVVCNKPSDLLCVPGRIEK--DSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
PL+++ VDD+I+V NKP+ LL VPGR E+ D LATRA E R IVHRLDM TSG +IMAR AL+ L RQF +R+ K Y A+++G L+ DEGEVDLPL + P H V+FE+GKP+ T+++V++R TRV L PV+GRSHQLR+HM ++GH I+GD+ Y ++ LADR LHA L + HP++GE FTAP F
Sbjct: 15 PLDIIHVDDDILVLNKPNGLLSVPGRTEEKFDCLATRAEAEFTGVR----IVHRLDMETSGVIIMARHMDALRHLGRQFEDRKTDKVYEALIYGNLARDEGEVDLPLLVDWPNRPKHRVDFENGKPAFTRYKVIERTEKTTRVALYPVTGRSHQLRVHMLSLGHAIIGDNLYAEGEAFTLADRLCLHARELTVTHPESGESLTFTAPVPF 220
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: RNA (pseudouridine synthase n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RL31_9PROT) HSP 1 Score: 201 bits (512), Expect = 3.500e-58 Identity = 102/207 (49.28%), Postives = 136/207 (65.70%), Query Frame = 3
Query: 276 LEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
L+VL+ DD ++V NK + LL VPG + +DSL TRAA G+ ++ HRLDMATSG ++M R L + QF +RQ KRY+A+V G ++ D+G VDLP+ + PL M+ E G+P++T W VL R D+TR+ L P++GRSHQLRLHM +GHPILGD +Y ++ A + R LLHA L L HP GER FTAPC F
Sbjct: 15 LDVLYGDDALIVLNKQAGLLSVPGNVSRDSLETRAAERFGN----TLVAHRLDMATSGVIVMPRGKENLAAVGLQFEKRQTEKRYIAVVWGDVAEDKGTVDLPIRCDWPNRPLQMICHERGRPAVTHWEVLTREGDKTRLALTPITGRSHQLRLHMKELGHPILGDEWYADGEARAASPRLLLHAEVLTLTHPANGERMSFTAPCPF 217
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridine (synthase n=4 Tax=Oceanimonas TaxID=129577 RepID=A0A233RBH1_9GAMM) HSP 1 Score: 201 bits (511), Expect = 5.580e-58 Identity = 108/218 (49.54%), Postives = 141/218 (64.68%), Query Frame = 3
Query: 249 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
++ PV P ++L+ DD ++V NKPS LL VPGR + DSL+ R + +V VHRLDMATSG ++MA A ++L+RQFRER+ KRY A VHG S DEG +DLPLC + P HMV+ EHGK +LT WR L R R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y ++L +A LHA L RHP+ R FTAP F
Sbjct: 6 YDPPVDPQ-FDILYQDDSLIVLNKPSGLLSVPGRDPVHFDSLSLRVSRVFPAVQV----VHRLDMATSGVIVMALNPKAHRELSRQFRERETEKRYYAWVHGQPSEDEGSIDLPLCCDWPNRPRHMVSHEHGKKALTHWRCLRREGQRSLMELTPITGRSHQLRVHMLSLGHPILGDNLYAEGEALTMAPHLQLHAAWLAFRHPRYKHRLEFTAPAPF 218
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QL36_9GAMM) HSP 1 Score: 200 bits (509), Expect = 1.170e-57 Identity = 106/208 (50.96%), Postives = 139/208 (66.83%), Query Frame = 3
Query: 279 EVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
EVL+ D+ ++V NKPS LL VPGR + +DSL+ R A D +VHRLDMATSG ++MA A ++L+RQFRER+ KRY A V+G +AD G VDLPLC + P HMV+ EHGKP+LT WR L R R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y + ++L +A + LHA L RHP+ FTAP F
Sbjct: 15 EVLYQDNSLIVLNKPSGLLSVPGREAVHRDSLSYRVA----RVYPDVQVVHRLDMATSGVIVMALHPKAHRELSRQFRERETEKRYYAWVYGSPAADAGSVDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPGRSLLELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALTMAPQLQLHAAHLAFRHPRYRHWLEFTAPAPF 218
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Match: bifunctional (tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Oceanisphaera sp. DM8 TaxID=2818389 RepID=UPI001AA08F5F) HSP 1 Score: 199 bits (505), Expect = 4.280e-57 Identity = 110/218 (50.46%), Postives = 139/218 (63.76%), Query Frame = 3
Query: 249 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 896
+N P+ P E+L+ DD I+V NKPS LL VPGR + DSLA R A IVHRLDMATSG +++A A +L+RQFRER+ KRY A V+G + D G VD+PLC + P MVN+E+GK +LT WR L R ADR+ VEL P++GRSHQLR+HM ++GH ILGD+ Y ++L +A LLHA L HP T E FTAP F
Sbjct: 6 YNPPMDPA-FEILYQDDSIIVLNKPSGLLSVPGRERVHHDSLALRVA----RVYPTAKIVHRLDMATSGVIVIALHAKAHSELSRQFRERETAKRYYAWVYGRPAEDAGSVDVPLCCDWPNRPRQMVNYEYGKAALTHWRCLRRLADRSLVELTPITGRSHQLRVHMKSLGHVILGDNLYAEGEALTMAPHLLLHASELAFYHPDTHEWLTFTAPAPF 218 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig93.17352.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig93.17352.1 >prot_E_fasciculatus_S2_contig93.17352.1 ID=prot_E_fasciculatus_S2_contig93.17352.1|Name=mRNA_E_fasciculatus_S2_contig93.17352.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=257bp MASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLback to top mRNA from alignment at E_fasciculatus_S2_contig93:34373..37860- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig93.17352.1 ID=mRNA_E_fasciculatus_S2_contig93.17352.1|Name=mRNA_E_fasciculatus_S2_contig93.17352.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3488bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig93:34373..37860- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig93:34373..37860- >mRNA_E_fasciculatus_S2_contig93.17352.1 ID=mRNA_E_fasciculatus_S2_contig93.17352.1|Name=mRNA_E_fasciculatus_S2_contig93.17352.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=771bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig93:34373..37860- (Ectocarpus fasciculatus EfasUO2)back to top |