mRNA_E_fasciculatus_S2_contig9292.17345.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9292.17345.1
Unique NamemRNA_E_fasciculatus_S2_contig9292.17345.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.060e-51
Identity = 126/144 (87.50%), Postives = 130/144 (90.28%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAPAHLRTTIQGVVSXXXXXXXXXXXXXXXXLLYAGLGASRCFAVSAALPSLSLLLLVLPTARRWVSGADARGGRAAAKGMPPRSRXXXXXXXXXXXXXXXXGRSSYELVAK 433
            VLR+PWWVLPAEVLHGLTFAAMWAATT+YAHGIAPAHLRTTIQGVVSXXXXXXXXXXXXXXXXLLYAGLGASRCFAVSAALPSLSLLLLVLPTA+RW+SG DAR GR  AKGMPP S      XXXXXXXX   GRSSYELVAK
Sbjct:  374 VLRKPWWVLPAEVLHGLTFAAMWAATTEYAHGIAPAHLRTTIQGVVSXXXXXXXXXXXXXXXXLLYAGLGASRCFAVSAALPSLSLLLLVLPTAKRWISGTDARDGRPGAKGMPPGSSRRCWGXXXXXXXXD--GRSSYELVAK 515
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: MFS_1_like (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.350e-26
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:  106 SSLANDDSRSRVRDPLGHGLRARGDAGRAPVRRPRRF*MFRRQRRSALAVPATAGPAHGETVGQRRRRARWAGGGKRYATS 348
            +SLANDDSRSRVR+PLG GL ARGDAGRAPVRRPR F +FRRQRRS+ AVPA AGPAHGETV QR RRAR A GG+RYATS
Sbjct:  465 TSLANDDSRSRVRNPLGPGLWARGDAGRAPVRRPRCFQVFRRQRRSSFAVPAVAGPAHGETVDQRHRRARRAAGGERYATS 545
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: MFS_1_like (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 5.290e-26
Identity = 58/105 (55.24%), Postives = 67/105 (63.81%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAPAHLRTTIQGVVSXXXXXXXXXXXXXXXXLLYAGLGASRCFAVSAALPSLSLLLLVLPTARRWVSGADARG 316
            VL +PWWVLPAE+ HGLTFAAMW+ATTDYAHGIAPAHLRTT+Q  V                 + YA LG  RCF  +AALP+LSLL LV+      V G   +G
Sbjct:   57 VLSDPWWVLPAELFHGLTFAAMWSATTDYAHGIAPAHLRTTMQASVGGLKRGLGYGLGAIVGGVSYANLGPRRCFLATAALPALSLLFLVILPRINIVGGLRKQG 161
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: MFS_1_like (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.460e-13
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAP 106
            VL +PWWVLPAE+LHGLTFAAMWAATTDYAHGIAP
Sbjct:   41 VLSDPWWVLPAELLHGLTFAAMWAATTDYAHGIAP 75
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: MFS_1_like (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI17_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.170e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAPAHLRTT 124
            VL +PWWVLPAE+LHGLTFAAMWAATTDYAHGIAP   +T+
Sbjct:  266 VLWDPWWVLPAELLHGLTFAAMWAATTDYAHGIAPGRDQTS 306
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.150e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAPAHLRTT 124
            VL +PWWVLPAE+LHGLTFAAMWAATTDYAHGIAP   +T+
Sbjct:  325 VLWDPWWVLPAELLHGLTFAAMWAATTDYAHGIAPGRDQTS 365
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: MFS_1_like (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.430e-11
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAP 106
            VLREPWWVLP+EVLHGLTFAAMWAATTDYAH IAP
Sbjct:  378 VLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 412
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNN8_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.850e-8
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAPAHLRTTIQGVVSXXXXXXXXXXXXXXXXLLYAGLGASRCFAVSAALPSLSLLLLVL 274
            VL+ PWWVLP E+LHGLTF AM+AA  +Y+  + P +L  T QG+ S                 LY   G    +   A   SL++++L+L
Sbjct:   37 VLQSPWWVLPLELLHGLTFGAMYAAGINYSSNLFPPNLSATGQGIFSGIYAGLGPLCGSLLGGWLYDQYGPRFMYQSMACFISLAVVILIL 127
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BMF6_MYTGA)

HSP 1 Score: 62.4 bits (150), Expect = 1.090e-6
Identity = 33/91 (36.26%), Postives = 45/91 (49.45%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAPAHLRTTIQGVVSXXXXXXXXXXXXXXXXLLYAGLGASRCFAVSAALPSLSLLLLVL 274
            +L   WWVLP E+LHG+TF  MWAA T Y   + P  +  TIQG++S                 LY+ +G    F + A    + L+L VL
Sbjct:  513 ILENAWWVLPVELLHGVTFGIMWAAATSYGSILTPEGMSGTIQGLLSGVHFGFGKGVGSLVTGQLYSQIGIRWTFRLYAISSFVLLILYVL 603
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BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Match: Putative (major facilitator superfamily domain-containing protein 6 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JUK5_STIJA)

HSP 1 Score: 61.2 bits (147), Expect = 1.560e-6
Identity = 35/107 (32.71%), Postives = 52/107 (48.60%), Query Frame = 2 
Query:    2 VLREPWWVLPAEVLHGLTFAAMWAATTDYAHGIAPAHLRTTIQGVVSXXXXXXXXXXXXXXXXLLYAGLGASRCFAVSAALPSLSLLLLVLPTARRWVSGADARGGR 322
            +LR PW +LP E+LHG+ F AMW A T +A+ +AP  +  T+Q +VS                 +Y   GA   F     L + + +LL+  T   ++    ARG R
Sbjct:  271 ILRNPWLILPIELLHGICFGAMWPAMTSFANKVAPPGMGATVQNLVSAVSMGAGRSIGSIVGGYIYNTYGARTLFWDCGYLCAGTTVLLIFYT---FIEAVRARGRR 374
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9292.17345.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
MFS1.060e-5187.50domain-containing protein n=1 Tax=Ectocarpus silic... [more]
MFS_1_like1.350e-2681.48domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
MFS_1_like5.290e-2655.24domain-containing protein n=1 Tax=Ectocarpus silic... [more]
MFS_1_like1.460e-1391.43domain-containing protein n=1 Tax=Ectocarpus silic... [more]
MFS_1_like1.170e-1180.49domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.150e-1180.49protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
MFS_1_like2.430e-1194.29domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical1.850e-837.36protein (Fragment) n=1 Tax=Vannella sp. CB-2014 Ta... [more]
MFS1.090e-636.26domain-containing protein n=1 Tax=Mytilus gallopro... [more]
Putative1.560e-632.71major facilitator superfamily domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9292contigE_fasciculatus_S2_contig9292:731..3128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score149.4
Seed ortholog evalue1.6e-33
Seed eggNOG ortholog2880.D7G3W1
Model size1361
KEGG koko:K11367
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-00_007140.4
EC3.6.4.12
Cds size564
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842578.322797-UTR-E_fasciculatus_S2_contig9292:730..7941696842578.322797-UTR-E_fasciculatus_S2_contig9292:730..794Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9292 731..794 +
1696842578.3681393-UTR-E_fasciculatus_S2_contig9292:2395..31281696842578.3681393-UTR-E_fasciculatus_S2_contig9292:2395..3128Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9292 2396..3128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842578.334658-CDS-E_fasciculatus_S2_contig9292:794..8371696842578.334658-CDS-E_fasciculatus_S2_contig9292:794..837Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9292 795..837 +
1696842578.3456395-CDS-E_fasciculatus_S2_contig9292:1449..17751696842578.3456395-CDS-E_fasciculatus_S2_contig9292:1449..1775Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9292 1450..1775 +
1696842578.3574543-CDS-E_fasciculatus_S2_contig9292:2200..23951696842578.3574543-CDS-E_fasciculatus_S2_contig9292:2200..2395Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9292 2201..2395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9292.17345.1prot_E_fasciculatus_S2_contig9292.17345.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9292 795..2395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9292.17345.1

>prot_E_fasciculatus_S2_contig9292.17345.1 ID=prot_E_fasciculatus_S2_contig9292.17345.1|Name=mRNA_E_fasciculatus_S2_contig9292.17345.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=188bp
MWAATTDYAHGIAPAHLRTTIQGVVSGIHWGMGFGLGAMLGGLLYAGLGA
SRCFAVSAALPSLSLLLLVLPTARRWVSGADARGGRAAAKGMPPRSRRRC
WGGCCCGGGGGDDGRSSYELVAKEAQTNDPSDRNDYCCDDDVDADRGSGN
SIDKTDNSSSSNGSDSGEDIRSDDSDLEAQRREATAV*
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mRNA from alignment at E_fasciculatus_S2_contig9292:731..3128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9292.17345.1 ID=mRNA_E_fasciculatus_S2_contig9292.17345.1|Name=mRNA_E_fasciculatus_S2_contig9292.17345.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2398bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9292:731..3128+ (Ectocarpus fasciculatus EfasUO2)
GGTACTGCGAGAGCCGTGGTGGGTCCTCCCGGCCGAGGTGCTGCACGGCC
TGACATTCGCCGCGATGTGGGCAGCCACCACGGACTACGCGCACGGGATC
GCTCCAGGCACGTTAGGTAGTGGTGGGTGACTAGAAGGTCACACTTTCAC
GGTTCTCTGGACCCTCTGTTTATTTTCTCGTTGCATTATCGTCTCCGTTT
CACCCTCTGTGCTGCTGCCGCTGCCGACGTCACCGCTCATTCTGCTGGTG
TTTTTGTTGCTTCGTGCCCTGCCGTCCCGGCCATGCACGCTTTTGTATTC
CGTCAATCGTTGCAATGTCCCACATTGGCTTCTACACTGCACTGCACTGC
GAGTTTTGTCGTGGCGTTGTAGCTTTGGCTTCGGGCTGGGTGTGGCCGTG
CCGGCGCAGCACACAAAGGCCACAAATGAAACGCAACGGGTATTTTTTCG
GGCAATCTTCATACCGAACGCGCTCATACCCTACACAGAGAGAGTACATA
AAAGCCCTCGGAAAGGATGCTCCCTCTCGAAGACGTGGCCCGCACGATCA
CGCCCAAAACCCTCCCCGCGCACACACGCGCGCCAACCCACGCCCACCAG
ACACACGCCCAGCTATGCGCCGGGGCATGCGAACGCATCGCCCTGACCTG
AGGATGGCCTCCCATGTAACCGTCCCTCGCTCCTCCCACACACCTCACAA
AAACAAAACCCAACCACAGCTCACTTGCGAACGACGATTCAAGGAGTCGT
GTCCGGGATCCACTGGGGCATGGGCTTCGGGCTCGGGGCGATGCTGGGAG
GGCTCCTGTACGCAGGCCTCGGCGCTTCTAGATGTTTCGCCGTCAGCGCC
GCTCTGCCCTCGCTGTCCCTGCTACTGCTGGTCCTGCCCACGGCGAGACG
GTGGGTCAGCGGCGCCGACGCGCGCGGTGGGCGGGCGGCGGCAAAAGGTA
TGCCACCTCGTAGCCGGCGACGGTGCTGGGGCGGCTGCTGCTGCGGCGGT
GGTGGTGGCGACGATGGACGCTCTTCGTACGAACTCGTTGCGAAGGTAGG
TAAAGGAACACTAAAGGTATCGCTTGTGTGGCCCACGGGGCAATATTTCG
CAGTTGCTTTTGCTGTAAGATCGGGTCTGAGGGTAAAGAGGGCTGCTGGC
CATGCAACGATGTCAATGGGGCGTGTAGTAGCGCTCCGCGGAAGGGCTGC
GGTGGCCGCAGCTTTAAGACAACTTTCCATTCAAGTTTTGTTGCGAAGGA
TCGGCGATGAGAACGGAACCAAGTCGCGGCGGCATGCTTGGCAAGTTTAT
CATCAGTACCTGCCCACATGCCGCAACCTCGCGAAAAATCGCGCGTAGTA
TGAGGTACACCGAGGTAGCCTACCGCAGCGGGACAACCGTGCAAAGTAAC
CTTCAGTCTCAACCACTCGTTTTGCGCCACGATACTGCACGAATTCCTCT
CTCGTGTTGTTCTCTTGTAGGAGGCTCAAACCAACGATCCCAGCGATCGA
AACGACTACTGCTGTGACGACGACGTCGATGCCGACAGAGGAAGCGGGAA
CAGCATCGACAAAACCGACAACAGCAGCAGCAGCAACGGCAGCGACAGCG
GCGAAGACATCAGAAGCGACGACAGCGACCTAGAGGCACAGCGGCGGGAG
GCAACGGCCGTGTAGACGAGACCCGCTCTGTTTTTTTCTGTCCCGTAACG
ACACGACGCGGTGTGTGTACGATACGAGGTGGACGCATTCTACAAAATAG
AGAAAATTTTGTACGTAGTTTTTGTCTCTACTTTTTGTTGCCGAGAGCGG
AAGTGGTGCACCAATAGTCTTCCTGACGTTCGCATGACGTTGAAGTGGTG
TGCCATCCACAAGGAAGGGTCGAAAGGGGTTCGAAGGGCGCCGACGCCAA
GGGAGTTGTGCTTGTGTCAAACACGATACGTACATGTATTCAAATTCAAG
TGTCAAGAAAAACGAAGTAATCCATCGCGTACTAGTACAGGAGTATCGTG
CAATGCAACGCCGTTCCACGCGGAATATCGCCTTTTGGGGATTACGCTTT
CGCTGCGGCAAACGCATTCCCCCTCCCTTGTGAAAGCCACACCCCTGTAG
ACAACCGACTATCGATGAAGATATTTTTTCGTCTCTTGGCGTGCAAGGCG
AAATTCTCTTCATGGGGCATTGATCGCCTCTCTCTGTGTGCGTTTATGAG
ACCGCACATCTTGGCGACAAGCTGTCAATAGGGGCAACCCCCTCTTGCCT
TCAGCACAGCTGACACGGTATTCTGACGAAACAGTGGCTATTGATCCACA
GTATCCAGCGGCGAACTCAGCGTCCCTAGGTACATTGGTGGACGTTGTAG
TTGCACAGACCAGACGATTCCGATTTCATTTTCTGTGAACTGAAAGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9292:731..3128+

>mRNA_E_fasciculatus_S2_contig9292.17345.1 ID=mRNA_E_fasciculatus_S2_contig9292.17345.1|Name=mRNA_E_fasciculatus_S2_contig9292.17345.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=564bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9292:731..3128+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGGCAGCCACCACGGACTACGCGCACGGGATCGCTCCAGCTCACTT
GCGAACGACGATTCAAGGAGTCGTGTCCGGGATCCACTGGGGCATGGGCT
TCGGGCTCGGGGCGATGCTGGGAGGGCTCCTGTACGCAGGCCTCGGCGCT
TCTAGATGTTTCGCCGTCAGCGCCGCTCTGCCCTCGCTGTCCCTGCTACT
GCTGGTCCTGCCCACGGCGAGACGGTGGGTCAGCGGCGCCGACGCGCGCG
GTGGGCGGGCGGCGGCAAAAGGTATGCCACCTCGTAGCCGGCGACGGTGC
TGGGGCGGCTGCTGCTGCGGCGGTGGTGGTGGCGACGATGGACGCTCTTC
GTACGAACTCGTTGCGAAGGAGGCTCAAACCAACGATCCCAGCGATCGAA
ACGACTACTGCTGTGACGACGACGTCGATGCCGACAGAGGAAGCGGGAAC
AGCATCGACAAAACCGACAACAGCAGCAGCAGCAACGGCAGCGACAGCGG
CGAAGACATCAGAAGCGACGACAGCGACCTAGAGGCACAGCGGCGGGAGG
CAACGGCCGTGTAG
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