mRNA_E_fasciculatus_S2_contig9264.17320.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 249 bits (636), Expect = 3.830e-68 Identity = 137/203 (67.49%), Postives = 150/203 (73.89%), Query Frame = 3
Query: 159 AAMTVDVLDAKPLRLNVQHVIEAQRHLHKEVLDTVQTSRSRHRASARVGSLLELVMGDYVLVTRVRRRGSTPKLLMIWTGPWRIVTAERPHVYGFQNIVMGEVRDIHVARLRF*SNAAL*IRAELKDFFQHAFM*GEFEIAAIVDMSVAEDGLGFDVEVGWVVFDE*ENAREEL*KVWDSAPQFVKSELRRLGLQKKVSFELN 767
A VDVLD K LRL VQHV+EAQRHLHKEVLD VQ SRS+HRASARVGSL + V+GDYV IV AER HVYG QNIV GEVRD+HVARLRF ++AAL I AELK+ FQHAF GEFE+AAIVDMSVAEDG GFDVEV WV FD+ EN EEL K+WD+APQFVKSELRRLGLQKKV +L
Sbjct: 1542 AEWKVDVLDEKSLRLKVQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYV-----------------------IVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPGFDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELRRLGLQKKVRAQLK 1721
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 196 bits (499), Expect = 1.500e-53 Identity = 96/197 (48.73%), Postives = 135/197 (68.53%), Query Frame = 3
Query: 162 AMTVDVLDAKPLRLNVQHVIEAQRHLHKEVLDTVQTSRSRHRASARVGSLLELVMGDYVLVTRVRRRGSTPKLLMIWTGPWRIVTAERPHVYGFQNIVMGEVRDIHVARLRF*SNAAL*IRAELKDFFQHAFM*GEFEIAAIVDMSVAEDGLGFDVEVGWVVFDE*ENAREEL*KVWDSAPQFVKSELRRLGLQKKV 752
A +D LDA L+ VQ+VI+ Q LHK++ V +R+R RA+A G L +GDYV+V RVRR G TPKL WTGPWR+V+A + HVYG QNIV G+VRD+HVARLRF +++ L + ++LKD FQH+F GE E+ +I+++ A DG G+ V V W F+E E+ + L ++ APQF+K ELR++ L K++
Sbjct: 218 AWNIDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEI 414
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.940e-50 Identity = 98/197 (49.75%), Postives = 135/197 (68.53%), Query Frame = 3
Query: 162 AMTVDVLDAKPLRLNVQHVIEAQRHLHKEVLDTVQTSRSRHRASARVGSLLELVMGDYVLVTRVRRRGSTPKLLMIWTGPWRIVTAERPHVYGFQNIVMGEVRDIHVARLRF*SNAAL*IRAELKDFFQHAFM*GEFEIAAIVDMSVAEDGLGFDVEVGWVVFDE*ENAREEL*KVWDSAPQFVKSELRRLGLQKKV 752
A +D LDA L+ VQ+VI+ Q LHK+V V +R+R RA+A G L +GDYV+V RVRR G TPKL WTGPWR+V+A + HVYG QNIV G+VRD+HVARLRF +++ L + ++LKD FQH+F GE E+ +I+++ A DG G+ V V W F+E E+ + L ++ APQF+K ELR++ L K+V
Sbjct: 1441 AWNIDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEV 1637
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Chromo (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 166 bits (420), Expect = 3.630e-45 Identity = 80/156 (51.28%), Postives = 110/156 (70.51%), Query Frame = 3
Query: 285 RASARVGSLLELVMGDYVLVTRVRRRGSTPKLLMIWTGPWRIVTAERPHVYGFQNIVMGEVRDIHVARLRF*SNAAL*IRAELKDFFQHAFM*GEFEIAAIVDMSVAEDGLGFDVEVGWVVFDE*ENAREEL*KVWDSAPQFVKSELRRLGLQKKV 752
RA+A G L +GDYV+V RVRR G TPKL WTGPWR+V+A + HVYG QNIV G+VRD+HVARLRF +++ L + ++LKD FQH+F GE E+ +I+++ A DG G+ V V W F+E E+ + L ++ APQF+K ELR++ L K+V
Sbjct: 4 RAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEV 159
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Chromo (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L994_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 7.050e-22 Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 3
Query: 459 GEVRDIHVARLRF*SNAAL*IRAELKDFFQHAFM*GEFEIAAIVDMSVAEDGLGFDVEVGWVVFDE*ENAREEL*KV 689
GEVRD+HV RLRF ++AAL I AEL D FQHAF G FE+AAIVD+S +EDG GFDVEV WV FD+ EN EEL K+
Sbjct: 4 GEVRDVHVKRLRFYADAALEITAELNDDFQHAFTQGAFEMAAIVDVSESEDGPGFDVEVEWVGFDKDENIWEELSKI 80
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 3.130e-20 Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = 3
Query: 384 MIWTGPWRIVTAERPHVYGFQNIVMGEVRDIHVARLRF*SNAAL*IRAELKDFFQHAFM*GEFEIAAIV 590
M WTGPWRIV A RPHV G QNIV GE RD+HVARLRF ++A+L I A KD F+HAF EFE+AAIV
Sbjct: 1 MTWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQEEFEMAAIV 69
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7X2_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 5.710e-17 Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 3
Query: 564 GEFEIAAIVDMSVAEDGLGFDVEVGWVVFDE*ENAREEL*KVWDSAPQFVKSELRRLGLQKKVS 755
GE +I IVD+SV EDGLGFD EV WV D+ +NA EEL K+WD+APQF +S+LRRLGL K+V+
Sbjct: 23 GELKIEVIVDISVTEDGLGFDAEVIWVALDKEKNAWEELSKIWDAAPQFRESKLRRLGLPKEVT 86
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Chromo (domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R290_9EUKA) HSP 1 Score: 77.8 bits (190), Expect = 6.060e-13 Identity = 54/166 (32.53%), Postives = 86/166 (51.81%), Query Frame = 3
Query: 237 LHKEVLDTVQTSRSRHRASARVGSLLELVMGDYVLVTRVRRRGSTPKLLMIWTGPWRIVTAERPHVYGFQNIVMGEVRDIHVARLRF*SNAAL*IRAELKDFFQHAFM*GE-FEIAAIVDMSVAEDGLGFDVEVGWVVFDE*ENAREEL*KVWDSAPQFVKSELRR 731
+HK+V+ Q R R R + +GDYVLV + + KL + WTGP I H++ Q++V + DIH RLRF S+A+L I EL + H G+ F I +++ + G+ +++ V W FD+ N+ E L ++ AP F+ SEL++
Sbjct: 1 MHKKVIAHRQDRRDRLNRK-RKAPIPNFSLGDYVLVANTLHKTGS-KLSVRWTGPHCITAVISDHIFRVQHLVTKSISDIHAIRLRFYSDASLNITEELLEQVAHD---GQGFMIDKLINSRQSGTGI-WELLVSWKGFDQLHNSWEPLLHLYQEAPVFLSSELKK 160
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA22_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 3.390e-12 Identity = 40/54 (74.07%), Postives = 42/54 (77.78%), Query Frame = 2
Query: 2 QQQDREWAHEGIEVRSFGGGGVCTDRDGTAVFSSGGGAEKGSAASPDNERTESS 163
QQQDR W H+GI+V FGG V TDRDGTAVF GGGAEKGS SPDNE TESS
Sbjct: 29 QQQDRGWTHKGIQVPYFGGEEVSTDRDGTAVFPRGGGAEKGSTDSPDNEPTESS 82
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Match: Ion_trans (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 9.540e-9 Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 2
Query: 2 QQQDREWAHEGIEVRSFGGGGVCTDRDGTAVFSSGGGAEKGSAASPDNERTES 160
QQQ REW H GIEV S GGGGV TDRDGTAVF GGG E+G A D+E TES
Sbjct: 494 QQQGREWVHNGIEVPSLGGGGVRTDRDGTAVFPRGGGEEQGRTARVDDESTES 546 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9264.17320.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9264.17320.1 >prot_E_fasciculatus_S2_contig9264.17320.1 ID=prot_E_fasciculatus_S2_contig9264.17320.1|Name=mRNA_E_fasciculatus_S2_contig9264.17320.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=140bp MEQRCFQVVVVRRRAARLAPTMNERKAAMTVDVLDAKPLRLNVQHVIEAQback to top mRNA from alignment at E_fasciculatus_S2_contig9264:840..3288+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9264.17320.1 ID=mRNA_E_fasciculatus_S2_contig9264.17320.1|Name=mRNA_E_fasciculatus_S2_contig9264.17320.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2449bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9264:840..3288+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9264:840..3288+ >mRNA_E_fasciculatus_S2_contig9264.17320.1 ID=mRNA_E_fasciculatus_S2_contig9264.17320.1|Name=mRNA_E_fasciculatus_S2_contig9264.17320.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9264:840..3288+ (Ectocarpus fasciculatus EfasUO2)back to top |