mRNA_E_fasciculatus_S2_contig9253.17311.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9253.17311.1
Unique NamemRNA_E_fasciculatus_S2_contig9253.17311.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9253.17311.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK94_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 1.120e-105
Identity = 212/251 (84.46%), Postives = 221/251 (88.05%), Query Frame = 2 
Query:  197 EQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKGLADGASQKNEAWLRMALGGLGKKIERGRESTRAGSTTXXXXXXXXXXXXXXXXE-LDEDGGSVSPALRLRAVEASNDCERLGRRLVELVIKEASMALRESDFDVTLREHKARESGAAASTTASIGNDSMGKSDVDKTT-ESQDLARHGRNQHRTGNSCSGDAPREKRCQGCDRLAHANVELTRLLLQTSALRARDEASCSDVPMAANTPSSP 943
            EQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELK LADGASQKNEAWLRM LGGLGKK +RG E+   G+  XXXXXXXXXXXXXXXX  +DEDGGSVSPALRLRAVEASN+CERLGRRLVELVIKEASM LRESDFDVT REHKARESG  AS TASIGN +M K DVDKTT E QDLA  GRNQHRTGNSCSGDAP EKRCQGCDRLAHANVELTRLLLQTS +RAR+E  CSD P+ ANTP SP
Sbjct:  587 EQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADGASQKNEAWLRMVLGGLGKKKQRGGETIMEGTXXXXXXXXXXXXXXXXXXXXIDEDGGSVSPALRLRAVEASNNCERLGRRLVELVIKEASMRLRESDFDVTPREHKARESGTTASATASIGNINMKKRDVDKTTTEPQDLAHRGRNQHRTGNSCSGDAPGEKRCQGCDRLAHANVELTRLLLQTSTMRAREEGRCSDTPITANTPPSP 837
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9253.17311.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA0_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.330e-33
Identity = 86/109 (78.90%), Postives = 88/109 (80.73%), Query Frame = 2 
Query:  197 EQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKGLADGASQKNEAWLRMALGGLGKKIERGRESTRAGSTTXXXXXXXXXXXXXXXXE--LDEDGGSVSPALRL 517
            EQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELK LAD ASQKNEAWLRM  GGLGK+ ERG ESTRAG+T            XXXXX   LDEDGGSVSPALRL
Sbjct:  199 EQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADSASQKNEAWLRMVFGGLGKQFERGDESTRAGATAAAAENGMRGLGXXXXXXXXLDEDGGSVSPALRL 307
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9253.17311.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.120e-10584.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.330e-3378.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9253contigE_fasciculatus_S2_contig9253:284..4536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1849
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003240.2
Cds size804
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9253.17311.1prot_E_fasciculatus_S2_contig9253.17311.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9253 1705..3846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842575.5047545-UTR-E_fasciculatus_S2_contig9253:283..6131696842575.5047545-UTR-E_fasciculatus_S2_contig9253:283..613Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9253 284..613 +
1696842575.515865-UTR-E_fasciculatus_S2_contig9253:1679..17041696842575.515865-UTR-E_fasciculatus_S2_contig9253:1679..1704Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9253 1680..1704 +
1696842575.5618684-UTR-E_fasciculatus_S2_contig9253:3846..45361696842575.5618684-UTR-E_fasciculatus_S2_contig9253:3846..4536Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9253 3847..4536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842575.5272448-CDS-E_fasciculatus_S2_contig9253:1704..18681696842575.5272448-CDS-E_fasciculatus_S2_contig9253:1704..1868Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9253 1705..1868 +
1696842575.538904-CDS-E_fasciculatus_S2_contig9253:2388..24781696842575.538904-CDS-E_fasciculatus_S2_contig9253:2388..2478Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9253 2389..2478 +
1696842575.5501635-CDS-E_fasciculatus_S2_contig9253:3296..38461696842575.5501635-CDS-E_fasciculatus_S2_contig9253:3296..3846Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9253 3297..3846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9253.17311.1

>prot_E_fasciculatus_S2_contig9253.17311.1 ID=prot_E_fasciculatus_S2_contig9253.17311.1|Name=mRNA_E_fasciculatus_S2_contig9253.17311.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=268bp
MALGGLGKKIERGRESTRAGSTTAAAENGMRGGGGGGGGELDEDGGSVSP
ALRLRAVEASNDCERLGRRLVELVIKEASMALRESDFDVTLREHKARESG
AAASTTASIGNDSMGKSDVDKTTESQDLARHGRNQHRTGNSCSGDAPREK
RCQGCDRLAHANVELTRLLLQTSALRARDEASCSDVPMAANTPSSPTTTA
ASNAQRQGAARRAGAATTTNKHRAATTAGRVVNRKKRAPSAGKSTKVVVV
VSPTRRPKSSGRRTTTR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9253:284..4536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9253.17311.1 ID=mRNA_E_fasciculatus_S2_contig9253.17311.1|Name=mRNA_E_fasciculatus_S2_contig9253.17311.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4253bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9253:284..4536+ (Ectocarpus fasciculatus EfasUO2)
GAAGGCCGGGATGAGAGAACATGATTTTATCTTATTGGGTTTGAAAACAC
GTAGAAAATGGGGATGAGAGTGTAGAGCATCCGGGAGTGGGGGTACAACT
TTCAATCATGTCTCCACTGCTCGTGTTCGTTTGCAACAGTTTCCTCCCGA
ACCAGTAGTTTGTTGTCCCTGCTGCACTGCTGGTGTTCGTCCCCAGGAGC
AAGAAGAACAAGGGTTGCGAGCGATCAGGGACAGAAGTTCAGCGGAGAGA
AAGGCAGCTTTGAAACGTATCAGAGAGGAGGGAGAACGTCGCTGCCTGAA
GGAGCTCAAGGGTCTTGCCGACGGCGCAAGGTGCGATTCTGTCCCTTTCT
ATTCTCCCGTCTTCTTTCCGCGTGCTCATCGCTTTGTCCTTTCTGTTTCT
CTTGCCGACGGCGCACGCTGCTGTACGGTTTCTCTCTTCTGTTTCTAGAT
GAGCTCAAAATTAAGTTCCAAAAAGCCCGAGTCATCTCCTGTATTTTTCG
TGTTGTTCAGGATGTTCATTCGCTCTCCGACGGCGAAAGGCAGCGTTTAC
AGCTTTCCTTCCAATGTGCAACGCCAGTTGTTGCCGCATGGCAAGCAGTT
CCTACTCCTGCCACGATCATGACCGCCTTCGGGGCCCCTCTCTCTCTGAA
CGTACTTACCCTGGTCCGGGGACGATCTCACAGGAGGACCACCCCCCCCC
CCACGTAAACCAGCCCATCATTGCTGTGTGGGCTGCCTGCCCAGGGCTCT
TCACGAAGAATAGCGGGGTCCCATCCGAAACACCCACCCACCCGTTCGCC
GGGTAGCACGATCGATGATAGCACAGGAAACAAAAACATCCTGAGCTTTT
TCTCCGCTATATCCCCTCCCCAAAACAAAAAACAAAAAAACAAAAACAAG
TACTTAAATAAAACACCTCCCGTATATATACATTTAGTCGTCCCGCTAAG
ACGGTTGGTTTTTTAACAACGAGTGGTAAGTCGGGTAGCGCGGTCGATGC
CATGCCTCAAGGACGACATCGTGGAAATGGAAATACCATCTGTCCTGAGG
GCCACTCCGATCACGGGTTGGTAACACAGAATGAAGGGACTCTTTTCACC
CTCTGGCGAGTCAGGAGGGCAGCCTCTCCCCGCCCGCAACGCCATTGCTC
GACGACTCTAGAGGCATTGGGCGGGAAACCGTCTGTGAAGCCGTGGTTCT
TCCATGCGTTTGGAGTGCGTCCATAGTATGTTTGGCATTCTGGATAGGGG
CCGGAAAGTCTCGTTGATGTAACGGTTTCGAGAAAAGACGATGACGAAAA
AGAAGAACATCATCAAGATCAACAACAAAAGCACGTACAACACAAACAAC
AAAAACAATAACAACAACAATACCCTTCCTTCATCGTACGCGGCAGCCAG
AAGAACGAGGCTTGGCTGCGAATGGCCCTCGGCGGCCTGGGAAAGAAAAT
CGAGCGTGGTCGTGAGAGCACCAGGGCAGGATCAACAACAGCGGCAGCAG
AAAACGGAATGAGAGGAGGAGGAGGGGGAGGAGGAGGAGAGCTCGACGAG
GATGGGGGTTCCGTATCTCCGGCGCTCCGTCTCAGGTGAAAAAAAGTTAA
AAGACATGCGGAGACTGTACTCGGAACCGGCTTTTCCGGCACCTGGGACC
CGGATCGAATTTTTCGTGAGGTCATTTGACGATTATCCGGTGGAACCGCT
TTGCGGCATGCGAGAACACAGATTGTGACTCGGGGTGAGACTTCATGCGA
ATTTTCGTCTATTAACTCCAATACGAAGCGCCCACTACCGTAGGTTGCAT
AAGATACTATCTCACCACTCGGACCGGTTTTCAAGCTCCATAAGGCGTCG
AGAGCTTTCCGAAAACGCATAAAGTTGATTTGGGCCATATTCTTCTCGTG
GAGTACTCGGGCTTTGAAAGTTGGACCAGGGGGCGTGGTATCTTTGCAAC
CTACGGTGTAGGCCACGCTGCTGCGCCCCGTGTGAGATAACATCGACAAC
AACAACGGTAACACCACCGCAAAACAACAGAAAATCCAGCAACCGCAACC
ACAGCAATGCTTGTATTTTGCGCTCTCGCTCTTCTCACACCCCAACCCCC
TTCAGGGCGGTTGAAGCTTCCAACGACTGCGAGAGGCTAGGCAGGCGACT
CGTCGAATTGGTCATCAAAGAAGCGTCAATGGCGCTAAGAGAGAGGTGAA
CCTGGTTGTTTGGTACAATTTACCGAGATGGGGTGAATCTTGCCGTGGGT
AAGTAACCACATTCAAAGATAGTAAAACGTTCTTTGGTTCTAAAAGGGAG
GGGACATAGAGCGCCGCTGCTTTTGCGCGCGTTTTTGTCTTTCGATGTGA
AGGAGGAAGCAAGAGGGATAGGAACAACAAGCCGCGACATCGTTGTCAAA
AGGTTTTCTGAGGTTGTGCGTATCGGTAAAAGGGTAGACGGTATTTTGTG
CTAGGCGAGGGACCCTTCGTGGTCACATAGGTTACCAGCGCCAAGTTGTT
GGTCGGTGAGTGACAAGGACAAACGGCGCTTGCTTGTGTTTCTTAGGGTT
AGGCGATGGTCCACTGACGTCGCCTGCTTCGGCAAGGGGCTCACGCGCCT
GGCCGTAGAGGGAGGTTGGGGTGAATAAGAGGCCAACGTTACTATCGAGA
CCTTGTGCGATGGTCCCGGAAATGATCGGTGCTCACCATTATGAACGTCC
GAAGCCATGCCTGCACACTGACCTCCACCTCCATTCTAAACGTCGGAGCC
GGGAATATCGGCGTTAAATCGATCAGATAGGCGACTTTTCCGTGTGGGAA
GCGATGCGATACGCTAGGAGATCCGCCAGGAAGGGTGAACTACATACGAA
GAGATATTCATCACGCAGACCTCGACACGTTATGATGGGGGGAAGGAGGG
CATTGCAAGGCTCCTCGGGTTGTGTCTGGACGGAATTGTTATCGTTGGCC
ACAGTATCGTCGTGTCTAACAACAGTTTTTTTTCCGGTCGTGTCTGTGCG
CGCCCCCGCGCAGCGACTTCGATGTCACCCTGCGAGAGCACAAAGCACGA
GAATCTGGTGCCGCGGCCTCCACCACCGCCAGCATCGGCAACGACAGCAT
GGGCAAGAGCGACGTAGACAAGACCACCGAGTCCCAGGATCTAGCACGTC
ACGGCCGAAACCAACATCGCACTGGCAACAGCTGCAGCGGCGACGCCCCG
CGCGAGAAACGTTGCCAAGGTTGCGACAGACTGGCTCACGCTAACGTGGA
GCTTACGCGTCTTTTGTTGCAAACATCTGCCTTGAGAGCACGGGACGAGG
CAAGTTGTTCTGATGTCCCGATGGCGGCAAACACCCCGTCATCACCAACA
ACAACCGCAGCTAGTAATGCCCAGCGGCAGGGAGCGGCGAGAAGAGCGGG
GGCAGCAACGACTACAAACAAGCACCGAGCTGCTACGACTGCCGGGAGGG
TGGTCAACAGAAAGAAGCGAGCACCGTCCGCGGGAAAAAGCACCAAAGTA
GTGGTAGTCGTGTCACCGACCCGTCGGCCAAAATCCTCCGGTCGACGCAC
CACCACGAGGTAGTAGCCAGCCCTGTACCCATATCGTACAACTCTGCGCC
ACAGGCATCAATCCGCGAGAGATGACGTCAAGAAAACCTAGGAGGTCAGG
ACCCACAGGTGCAATCTCGGCACTTCAGATGCAGATGCAAAAGGATCTGT
CGTGTTGCCCACCACGTTCACACGGGGCATAGTTCGGCTAAAGTGAATCC
CAGGGGGTCCTGCAACTAGTTTCATCCACAAGAATGGGGACGGCGTCGAG
CTGTGCGGTTCAGGAACTACAGGCTGCAGACAAATACGACATGGAGTCAC
ACGGCTGTCCTGCCTGTTCGTCGTAAGAAATACGGGGTGTTCAGTTCCCC
CCCCCCCCCGCTAACCACGCGGGGAGACCTGCTAGACTCCCGTGGATGAT
ATCACACAACGCACGGTTGTTGCTAAGAAAACACAACCTGGTGGAGCAAA
CTTCATAAACGGACGGAAATCGAGTGGAATGTTGACACGTTCTACTCTAT
CTGCAATGTGTATTGAGAGATTCGCATCTTTGTCTTAGTATGAAGATTCT
GGGTGTACTGCAGATAGAACGTTCGTCCTTCTTTTGTTCTCCAAATGCAA
CGGCGGTTTTCTGCTGGAAACGGTGGTGCTGAGGGGGTTCGTCAGCTTTG
GTTAAAAGCAAGTGAATGGATCCTCCCCGGTAATGATAGTGTTTGTAGAG
AAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9253:284..4536+

>mRNA_E_fasciculatus_S2_contig9253.17311.1 ID=mRNA_E_fasciculatus_S2_contig9253.17311.1|Name=mRNA_E_fasciculatus_S2_contig9253.17311.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=804bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9253:284..4536+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCCTCGGCGGCCTGGGAAAGAAAATCGAGCGTGGTCGTGAGAGCAC
CAGGGCAGGATCAACAACAGCGGCAGCAGAAAACGGAATGAGAGGAGGAG
GAGGGGGAGGAGGAGGAGAGCTCGACGAGGATGGGGGTTCCGTATCTCCG
GCGCTCCGTCTCAGGGCGGTTGAAGCTTCCAACGACTGCGAGAGGCTAGG
CAGGCGACTCGTCGAATTGGTCATCAAAGAAGCGTCAATGGCGCTAAGAG
AGAGCGACTTCGATGTCACCCTGCGAGAGCACAAAGCACGAGAATCTGGT
GCCGCGGCCTCCACCACCGCCAGCATCGGCAACGACAGCATGGGCAAGAG
CGACGTAGACAAGACCACCGAGTCCCAGGATCTAGCACGTCACGGCCGAA
ACCAACATCGCACTGGCAACAGCTGCAGCGGCGACGCCCCGCGCGAGAAA
CGTTGCCAAGGTTGCGACAGACTGGCTCACGCTAACGTGGAGCTTACGCG
TCTTTTGTTGCAAACATCTGCCTTGAGAGCACGGGACGAGGCAAGTTGTT
CTGATGTCCCGATGGCGGCAAACACCCCGTCATCACCAACAACAACCGCA
GCTAGTAATGCCCAGCGGCAGGGAGCGGCGAGAAGAGCGGGGGCAGCAAC
GACTACAAACAAGCACCGAGCTGCTACGACTGCCGGGAGGGTGGTCAACA
GAAAGAAGCGAGCACCGTCCGCGGGAAAAAGCACCAAAGTAGTGGTAGTC
GTGTCACCGACCCGTCGGCCAAAATCCTCCGGTCGACGCACCACCACGAG
GTAG
back to top