mRNA_E_fasciculatus_S2_contig9249.17306.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA (polymerase mu n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK4_ECTSI) HSP 1 Score: 528 bits (1360), Expect = 1.180e-183 Identity = 263/318 (82.70%), Postives = 277/318 (87.11%), Query Frame = 1
Query: 1 LQSHPRNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFHDMQASVPIGRDEVVGIADEVREEAERFGRERDPEGTVLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVELVRRPQGRDIHPRNRKSTGLPTLDDNVTDKLKHPCQGLKERLTESGKLCATLYQGQMGGFTKPKAGQTPQPKLEREEVLMALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATEEPVTDVASFQTEEDIFRFLGLEYIPPHLRWV 954
L+SHPRNQVCQQLMKVHGVGS+TAK+WYNRGIRSVEDAR TLLP DD TEGD++RP LKPEVVMGLKHFHDMQ VPIGRDEVVGIADEVREEAERFGRERDPEGT+LFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVE +R G + + +D + +GLKERL E GKLCATLYQGQMGGFTK K GQ PQPKLEREEVLMALWQLPGRKCRIDIVQVA QWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRAT+EPVTD+ SFQTEEDIFRFLGLEYIPPHLRWV
Sbjct: 276 LKSHPRNQVCQQLMKVHGVGSRTAKDWYNRGIRSVEDARRTLLPNDDDTEGDEKRPNLKPEVVMGLKHFHDMQ--VPIGRDEVVGIADEVREEAERFGRERDPEGTLLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVEALRALDGYLVEGEQIVGAEVKAFEDLEYFFV----EGLKERLMERGKLCATLYQGQMGGFTKAKGGQAPQPKLEREEVLMALWQLPGRKCRIDIVQVASSQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATDEPVTDIVSFQTEEDIFRFLGLEYIPPHLRWV 587
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA_pol_B_thumb (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS2_9PHAE) HSP 1 Score: 191 bits (486), Expect = 2.430e-58 Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1
Query: 673 MALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATEEPVTDVASFQTEEDIFRFLGLEYIPPHLRWV 954
MALWQLPGRKCRIDIVQVA PQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRAT+EPVTD+ SFQTEEDIFRFLGLEYIPPHLRWV
Sbjct: 1 MALWQLPGRKCRIDIVQVASPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATDEPVTDIVSFQTEEDIFRFLGLEYIPPHLRWV 94
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA_pol_lambd_f (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR4_9PHAE) HSP 1 Score: 139 bits (349), Expect = 6.040e-33 Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query: 1 LQSHPRNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFHDMQ 219
L+SHPRNQVCQ+LMKVHGVGS+TAK+WYNRGIRSVEDAR TLLP DD TEG+D+RP LKPEVVMGLKHFHDMQ
Sbjct: 698 LKSHPRNQVCQELMKVHGVGSRTAKDWYNRGIRSVEDARRTLLPNDDDTEGEDKRPNLKPEVVMGLKHFHDMQ 770
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA-directed (DNA/RNA polymerase mu n=2 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SPZ7_9SAUR) HSP 1 Score: 114 bits (285), Expect = 9.760e-25 Identity = 91/317 (28.71%), Postives = 147/317 (46.37%), Query Frame = 1
Query: 1 LQSHPRNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFHDMQASVPIGRDEVVGIADEVREEAERFGRERDPEGTVLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVELVRRPQGRDIHPRNRKSTGLPTLDDNVTDKLKHPCQGLKERLTESGKLCATLY-QGQMGGFTKPKAGQTPQPKLEREEVLMALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATEEPVTDVASFQTEEDIFRFLGLEYIPPHLR 948
+Q + Q + K+ GVG KTA +WY G R+++D R L E GL H+ D+ + P+ R + I VRE + P +V + GGFRRGK + HDVD+L++ E G V QG ++ ++T +L+D+ + H + + C +++ G + G + AG ++ R W + R+D+V Q+PFALLGW+G+ +FE+D+RR+ + E K+ T+ E+ A+ +E++IF+ LGLEYIPP R
Sbjct: 248 IQQSEKFQTMKLFTKIFGVGVKTAHQWYQEGRRTLDDLRGHPA-------------QLSKEQQAGLIHYEDL--NTPVKRADAEAIGQVVREAVNKC----LPSASVT--LTGGFRRGKPSGHDVDLLITHPTEGQEAGLLKKVIACLDQQGFLLYHSIHRNT-FESLEDSDQEPSSHASS------MDQYERCFSIFCLGDLPGDAQEGAGAEKPSRVRRTSGASRFW----KAVRVDLVVTPYSQFPFALLGWTGSRIFERDLRRFA--KREKKMLLNSHTLYHLEQKTWMSAA--SEKEIFQHLGLEYIPPEER 528
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA-directed (DNA/RNA polymerase mu isoform X4 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF78DD6) HSP 1 Score: 112 bits (280), Expect = 2.450e-24 Identity = 94/313 (30.03%), Postives = 148/313 (47.28%), Query Frame = 1
Query: 16 RNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFHDMQASVPIGRDEVVGIADEVREEAERFGRERDPEGTVLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVELVRRPQGRDIHPRNRKSTGLPTLDDNVTDKLKHPCQGLKERLTESGKLCATLYQ--GQMGGFTKPKAGQTPQPKLEREEVLMALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATEEPVTDVASFQTEEDIFRFLGLEYIPPHLR 948
R Q + K+ GVG KTA +WY G+R+++D + L E GL H+ D+ S P+ R E I+ VRE AER+ GT + + GGFRRGK + HDVD+L++ + E G + QG ++ + ++T P + + G +R + C ++++ + GG Q P R+ V R+D+V Q+PFALLGW+G+ FE+D+RR+ + E K++ + E+ + A+ +EE+IF+ LGLEYIPP R
Sbjct: 176 RYQTMKLFTKMFGVGVKTASQWYQEGLRTLQDLQMRCTK-------------LSREQQAGLLHYTDL--STPVERPEAEAISQLVREVAERY-----LPGTSVT-LTGGFRRGKRSGHDVDLLITHPVESREEGLLSKIISWLHSQGFLLYQNSCRNTFQPFK---MEVQEASGSAGSMDRFEQ----CFSIFRLADRPGGPRGDAGAQKPGASSSRKAV------------RVDLVISPYSQFPFALLGWTGSRNFERDLRRFARQ--EKKMALNSHALYHMEQKIFLPAA--SEEEIFQHLGLEYIPPEER 444
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA-directed (DNA/RNA polymerase mu n=4 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2KWW6_VARKO) HSP 1 Score: 112 bits (280), Expect = 3.630e-24 Identity = 94/313 (30.03%), Postives = 148/313 (47.28%), Query Frame = 1
Query: 16 RNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFHDMQASVPIGRDEVVGIADEVREEAERFGRERDPEGTVLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVELVRRPQGRDIHPRNRKSTGLPTLDDNVTDKLKHPCQGLKERLTESGKLCATLYQ--GQMGGFTKPKAGQTPQPKLEREEVLMALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATEEPVTDVASFQTEEDIFRFLGLEYIPPHLR 948
R Q + K+ GVG KTA +WY G+R+++D + L E GL H+ D+ S P+ R E I+ VRE AER+ GT + + GGFRRGK + HDVD+L++ + E G + QG ++ + ++T P + + G +R + C ++++ + GG Q P R+ V R+D+V Q+PFALLGW+G+ FE+D+RR+ + E K++ + E+ + A+ +EE+IF+ LGLEYIPP R
Sbjct: 222 RYQTMKLFTKMFGVGVKTASQWYQEGLRTLQDLQMRCTK-------------LSREQQAGLLHYTDL--STPVERPEAEAISQLVREVAERY-----LPGTSVT-LTGGFRRGKRSGHDVDLLITHPVESREEGLLSKIISWLHSQGFLLYQNSCRNTFQPFK---MEVQEASGSAGSMDRFEQ----CFSIFRLADRPGGPRGDAGAQKPGASSSRKAV------------RVDLVISPYSQFPFALLGWTGSRNFERDLRRFARQ--EKKMALNSHALYHMEQKIFLPAA--SEEEIFQHLGLEYIPPEER 490
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA-directed (DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=UPI000E1E930D) HSP 1 Score: 108 bits (271), Expect = 2.200e-23 Identity = 89/299 (29.77%), Postives = 134/299 (44.82%), Query Frame = 1
Query: 46 VHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFHDMQASVPIGRDEVVGIADEVREEAERFGRERDPEGTVLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVELVRRPQGRDIHPRNRKSTGLPTLDDNVTDKLKHPCQGLKERLTESGKLCATLYQGQMGGFTKPKAGQTPQPKLEREEVLMALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATEEPVTDV-ASFQTEEDIFRFLGLEYIPP 939
+ GVG++TA WY +G+R+++D R+ P L + GL+H+ D+ + P+ E +A+ VR EA R P+ TV + GGFRRGK T HDVD+L+S HP + L L RL + G L Q G +P G + + ER ++ L R R+D+V Q+ FALLGW+G+ FE+++RR+ Q LS G+ +P ++ +EE+IF+ LGL+YIPP
Sbjct: 153 IFGVGTQTAARWYRQGLRTLDDLRAA-------------GPRLSRQQQAGLRHWEDL--ATPVTLAEAEAVAELVRAEARRV----LPDATVT--LVGGFRRGKPTGHDVDLLLS-------------------------HPEEGRERAL--------------LGPLVARLEQQGLLLYEQSQPNTFGL-EPSGGGSGLDRFERCFAIVRL----ARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLY-----DPXRELFLPAASEEEIFQLLGLDYIPP 381
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA-directed (DNA/RNA polymerase mu n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112ACE1A) HSP 1 Score: 110 bits (274), Expect = 2.660e-23 Identity = 90/311 (28.94%), Postives = 145/311 (46.62%), Query Frame = 1
Query: 16 RNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFHDMQASVPIGRDEVVGIADEVREEAERFGRERDPEGTVLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVELVRRPQGRDIHPRNRKSTGLPTLDDNVTDKLK-HPCQ-GLKERLTESGKLCATLYQGQMGGFTKPKAGQ-TPQPKLEREEVLMALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATEEPVTDVASFQTEEDIFRFLGLEYIPP 939
R Q + + GVG KTA WY G+RS+ D R + L E GL+H+ D+ + P+ R E IA + E RF E + ++ GGFRRGK HDVD+L++ + E G ++L+ Q S GL D + + HP Q + + + C ++++ + ++K G T L R+ W + R+D++ + Q+P+ALLGW+G+ FE+++RR++ + + L+ + T + VAS EEDIF LGLE++PP
Sbjct: 236 RYQTMKLFTNIFGVGVKTADNWYQEGLRSLGDLRK-------------HQKKLTQEQEAGLQHYEDL--NTPVSRREADVIAKMIEEATCRFLPE------TVVKLTGGFRRGKPFGHDVDILITHPQEGSEEGL--LIKLISWLQ----------SQGLILYHDLKKNSYQDHPSQRSVSTSAMDHFERCFSIFRLKGQSWSKGDGGAGTHSTDLARDPGAFRDW----KAVRVDLIVAPMSQYPYALLGWTGSKHFERELRRFSFHEKKMVLNSHA--LYDTVQQTFLVAS--REEDIFAHLGLEFVPP 505
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA (polymerase n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194S0Q7_RHOGW) HSP 1 Score: 108 bits (270), Expect = 2.960e-23 Identity = 94/313 (30.03%), Postives = 140/313 (44.73%), Query Frame = 1
Query: 16 RNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFH-DMQASVPIGRDEVVGIADEVREEAERFGRERDPEGTVLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVELVRRPQGRDIHPRNRKSTGLPTLDDNVTDKLKHPCQGLKERLTESGKLCATLYQGQMG-GFTKPKAGQTPQPKLEREEVLMALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATEEPVTDVASFQTEEDIFRFLGLEYIPPHLR 948
R +V + L VHGVG A + Y+ G R+++D ++ L + D ++ FH D+Q P+ R EV + D VR + ++ G L E+CGG+RRGK T D+D+L++F +G +GF L L D + K P G LTE+G T + G T KA + +W+ R+D+V A P W A+LGW+G+ FE+D+RR+ + + G+ + T E V +TE D FR L LE+IPPHLR
Sbjct: 124 RFKVLRLLTTVHGVGHALANKLYDDGTRTLDDLQAMLKDRHD---------------ILRYMRFHADLQE--PVSRTEVESVRDFVRLQVDKV-----LPGAHL-ELCGGYRRGKATSGDIDILITFPHQDGL--ERGF---------------------LRRLVDRLVKKGLVPRDGGVLSLTEAGSSRTTWANRRASLGDTLDKALVVFRHPANGTTRTRDVWR------RVDLVVAAWPHWGPAVLGWTGSTQFERDLRRHAGKLCRLHVHSGGIRDKETNEHV----EAKTERDCFRLLKLEWIPPHLR 380
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Match: DNA-directed (DNA/RNA polymerase mu n=2 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7XX35_9AMPH) HSP 1 Score: 109 bits (273), Expect = 3.420e-23 Identity = 88/310 (28.39%), Postives = 146/310 (47.10%), Query Frame = 1
Query: 16 RNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEGDDERPYLKPEVVMGLKHFHDMQASVPIGRDEVVGIADEVREEAERFGRERDPEGTVLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVELVRRPQGRDIHPRNRKSTGLPTLDDNVTDKLKHPCQGLKERLTESGKLCATLYQGQMGGFTKPKAGQTPQPKLEREEVLMALWQLPGRKCRIDIVQVALPQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGV--TIRATEEPVTDVASFQTEEDIFRFLGLEYIPP 939
R Q + + GVG KTA +WY G+RS+ D R++ ++ L + GL+H+ D+ ++P+ E IA V E A RF GT++ + GGFRRGK + HDVD+L++ + E G V + QG ++ ++++ + + GK +++ + G F+ K Q + V + R+D+V + Q+PFALLGW+G+ FE+++RR++ + + L+ + T++ T T +EEDIF LGLEYIPP
Sbjct: 231 RYQTMKLFTNIFGVGIKTANKWYQEGLRSIGDLRNSQ-----------KKLKLTKQQETGLQHYEDL--TMPVSHTEADLIAKMVEEVAHRF-----LPGTIIT-LAGGFRRGKLSGHDVDILITHPQEGREEGLLSKVISQLQSQGLILYHSLKRNSYY-------------------DASSPGGKSTSSMDHFE-GSFSIFKLKGLSQSRDNGARVHSTDSGRDWKAVRVDLVVTPISQYPFALLGWTGSKHFERELRRFSSHEKKMVLNSHALYDTVQQTFLAAT------SEEDIFMHLGLEYIPP 495 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9249.17306.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9249.17306.1 >prot_E_fasciculatus_S2_contig9249.17306.1 ID=prot_E_fasciculatus_S2_contig9249.17306.1|Name=mRNA_E_fasciculatus_S2_contig9249.17306.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=319bp LQSHPRNQVCQQLMKVHGVGSKTAKEWYNRGIRSVEDARSTLLPKDDGTEback to top mRNA from alignment at E_fasciculatus_S2_contig9249:497..6050- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9249.17306.1 ID=mRNA_E_fasciculatus_S2_contig9249.17306.1|Name=mRNA_E_fasciculatus_S2_contig9249.17306.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5554bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9249:497..6050- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9249:497..6050- >mRNA_E_fasciculatus_S2_contig9249.17306.1 ID=mRNA_E_fasciculatus_S2_contig9249.17306.1|Name=mRNA_E_fasciculatus_S2_contig9249.17306.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=957bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9249:497..6050- (Ectocarpus fasciculatus EfasUO2)back to top |